* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000964.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF03334.16
|
1.0
|
2
|
3489.5
|
opposite-strand
|
Na+/H+ antiporter subunit
|
2
|
PF03061.24
|
1.0
|
2
|
3070.5
|
same-strand
|
Thioesterase superfamily
|
3
|
PF00072.26
|
1.0
|
2
|
2408.0
|
same-strand
|
Response regulator receiver domain
|
4
|
PF00196.21
|
1.0
|
2
|
2408.0
|
same-strand
|
Bacterial regulatory proteins, luxR family
|
5
|
PF07730.15
|
1.0
|
2
|
480.0
|
same-strand
|
Histidine kinase
|
6
|
PF02518.28
|
1.0
|
2
|
480.0
|
same-strand
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
|
7
|
PF08181.13
|
1.0
|
2
|
1071.5
|
same-strand
|
DegQ (SacQ) family
|
8
|
PF17767.3
|
1.0
|
2
|
3382.0
|
same-strand
|
Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain
|
9
|
PF17956.3
|
1.0
|
2
|
3382.0
|
same-strand
|
Nicotinate phosphoribosyltransferase C-terminal domain
|
10
|
PF04095.18
|
1.0
|
2
|
3382.0
|
same-strand
|
Nicotinate phosphoribosyltransferase (NAPRTase) family
|
++ More..