Result : A5F3C2
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Citrate lyase acyl carrier protein (Citrate lyase gamma chain) |
| NCBI Accession ID | CP000627.1 |
| Organism | Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) |
| Left | 345010 |
| Right | 345306 |
| Strand | + |
| Nucleotide Sequence | ATGAAAATTGCCCATCCCGCCTTTGCGGGAACACTGGAATCCAGTGATCTTCAGGTTCGGATTGAACCCAATAACGATGGCGGTATTGAACTGGTGTTAGACAGTACCGTCGAGCAGCGATTTGGTCATGCGATTCGTCAGGTCGTGCTGCACACCCTCGATGCGATGCAAGTGCATGATGCGCTGGTCACCATCGAAGACAAAGGTGCGCTGGATTGTGTGATCCGCGCGCGCGTACAGGCGGCGGTGATGCGCGCTTGTGATGTTCAGAACATTGAGTGGAGTCAGCTATCATGA |
| Sequence | MKIAHPAFAGTLESSDLQVRIEPNNDGGIELVLDSTVEQRFGHAIRQVVLHTLDAMQVHDALVTIEDKGALDCVIRARVQAAVMRACDVQNIEWSQLS |
| Source of smORF | Swiss-Prot |
| Function | Covalent carrier of the coenzyme of citrate lyase. {ECO:0000255|HAMAP-Rule:MF_00805}. |
| Pubmed ID | 19115014 |
| Domain | CDD:414649 |
| Functional Category | Others |
| Uniprot ID | A5F3C2 |
| ORF Length (Amino Acid) | 98 |
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| Conservation Analysis |
No. of Species: 109
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 447920 | 448216 | + | NZ_CP035688.1 | Vibrio metoecus |
| 2 | 703947 | 704243 | + | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 3 | 2733886 | 2734182 | - | NZ_AP014635.1 | Vibrio tritonius |
| 4 | 1816300 | 1816596 | + | NZ_CP046268.1 | Vibrio spartinae |
| 5 | 604605 | 604901 | - | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 6 | 2168699 | 2168995 | - | NZ_CP009467.1 | Vibrio harveyi |
| 7 | 1336687 | 1336980 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 8 | 1728326 | 1728619 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 9 | 3804156 | 3804449 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 10 | 2929192 | 2929488 | - | NZ_LS483250.1 | Moritella yayanosii |
| 11 | 7026 | 7319 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 12 | 69710 | 70003 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 13 | 778560 | 778853 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 14 | 3361267 | 3361560 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 15 | 3789968 | 3790267 | - | NZ_CP011803.1 | Clostridium carboxidivorans P7 |
| 16 | 2440783 | 2441073 | + | NZ_CP007445.1 | Gilliamella apicola |
| 17 | 2609425 | 2609718 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 18 | 535356 | 535646 | + | NZ_CP009056.1 | Frischella perrara |
| 19 | 3905680 | 3905973 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 20 | 871410 | 871703 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 21 | 730142 | 730435 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 22 | 2142898 | 2143188 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 23 | 4004726 | 4005019 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 24 | 909510 | 909800 | - | NZ_CP026047.1 | Raoultella planticola |
| 25 | 785368 | 785658 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 26 | 1951884 | 1952174 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 27 | 733781 | 734071 | + | NZ_CP041247.1 | Raoultella electrica |
| 28 | 4263349 | 4263642 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 29 | 2850092 | 2850382 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 30 | 3933202 | 3933495 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 31 | 3819403 | 3819693 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 32 | 1657360 | 1657653 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 33 | 2188138 | 2188428 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 34 | 3670515 | 3670805 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 35 | 3603007 | 3603300 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 36 | 4396316 | 4396609 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 37 | 3876614 | 3876907 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 38 | 4463658 | 4463951 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 39 | 794291 | 794584 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 40 | 3907270 | 3907563 | - | NC_015968.1 | Enterobacter soli |
| 41 | 3910312 | 3910605 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 42 | 172918 | 173217 | - | NZ_LT960612.1 | Vibrio tapetis subsp. tapetis |
| 43 | 4070032 | 4070325 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 44 | 2713589 | 2713879 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 45 | 2073465 | 2073755 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 46 | 867670 | 867963 | - | NZ_CP011078.1 | Yersinia ruckeri |
| 47 | 3316206 | 3316496 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 48 | 4090365 | 4090658 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 49 | 357365 | 357658 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 50 | 2066906 | 2067196 | - | NZ_CP065534.1 | Lonsdalea populi |
| 51 | 506281 | 506574 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 52 | 4856946 | 4857239 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 53 | 3780043 | 3780336 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 54 | 1781692 | 1781982 | + | NZ_CP025799.1 | Dickeya zeae |
| 55 | 2152334 | 2152624 | + | NZ_CP025799.1 | Dickeya zeae |
| 56 | 4047212 | 4047508 | - | NC_020291.1 | Clostridium saccharoperbutylacetonicum N1-4(HMT) |
| 57 | 4805639 | 4805935 | - | NC_020291.1 | Clostridium saccharoperbutylacetonicum N1-4(HMT) |
| 58 | 2614221 | 2614514 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 59 | 3863263 | 3863556 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 60 | 602320 | 602610 | - | NZ_CP009460.1 | Dickeya fangzhongdai |
| 61 | 2831762 | 2832052 | + | NZ_CP029822.1 | Entomomonas moraniae |
| 62 | 3566203 | 3566496 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 63 | 1286565 | 1286819 | + | NZ_CP060715.1 | Erysipelothrix inopinata |
| 64 | 2140430 | 2140720 | + | NZ_CP031560.1 | Dickeya dianthicola |
| 65 | 3092916 | 3093212 | - | NZ_LS483470.1 | Leminorella richardii |
| 66 | 4360233 | 4360523 | + | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 67 | 671061 | 671351 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 68 | 521000 | 521290 | - | NZ_CP067057.1 | Rahnella aceris |
| 69 | 4454483 | 4454776 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 70 | 4302974 | 4303267 | - | NZ_CP023525.1 | Cedecea neteri |
| 71 | 3388819 | 3389115 | - | NZ_LR134531.1 | Pragia fontium |
| 72 | 1768573 | 1768863 | + | NC_014500.1 | Dickeya dadantii 3937 |
| 73 | 2208885 | 2209175 | + | NC_014500.1 | Dickeya dadantii 3937 |
| 74 | 1277589 | 1277885 | - | NZ_CP034234.1 | Erysipelothrix piscisicarius |
| 75 | 399371 | 399667 | - | NZ_CP029357.1 | Azospirillum thermophilum |
| 76 | 724456 | 724695 | + | NZ_AP014724.1 | Sulfurospirillum cavolei |
| 77 | 2032582 | 2032872 | + | NZ_CP013213.1 | Erysipelothrix larvae |
| 78 | 49550 | 49846 | - | NZ_CP068420.1 | Gluconobacter sphaericus |
| 79 | 2620598 | 2620888 | - | NZ_CP042220.2 | Dickeya poaceiphila |
| 80 | 2337564 | 2337854 | - | NZ_CP042220.2 | Dickeya poaceiphila |
| 81 | 3509467 | 3509775 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 82 | 3492724 | 3493005 | - | NZ_LR134494.1 | Serratia quinivorans |
| 83 | 5165233 | 5165526 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 84 | 16122 | 16418 | + | NZ_CP014690.1 | Gluconobacter albidus |
| 85 | 1439397 | 1439636 | + | NZ_LR134439.1 | Erysipelothrix rhusiopathiae |
| 86 | 2655765 | 2656055 | - | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 87 | 6043423 | 6043695 | - | NC_016641.1 | Paenibacillus terrae HPL-003 |
| 88 | 3443109 | 3443417 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 89 | 1575890 | 1576180 | + | NZ_LT615367.1 | Dickeya aquatica |
| 90 | 2125020 | 2125310 | + | NZ_LT615367.1 | Dickeya aquatica |
| 91 | 1420158 | 1420430 | + | NZ_CP020028.1 | Paenibacillus kribbensis |
| 92 | 187371 | 187667 | + | NZ_CP009787.1 | Yersinia rohdei |
| 93 | 2922593 | 2922886 | - | NZ_CP043727.1 | Yersinia canariae |
| 94 | 2381584 | 2381877 | - | NZ_CP032487.1 | Yersinia hibernica |
| 95 | 815245 | 815565 | + | NZ_CP031733.1 | Streptococcus chenjunshii |
| 96 | 532134 | 532427 | + | NZ_CP017713.1 | Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 |
| 97 | 2913137 | 2913430 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 98 | 3044891 | 3045184 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 99 | 898916 | 899158 | - | NZ_CP045298.1 | Paenibacillus brasilensis |
| 100 | 931542 | 931829 | - | NZ_CP009159.1 | Actinobacillus suis ATCC 33415 |
| 101 | 897004 | 897306 | + | NZ_CP068114.1 | Fusobacterium canifelinum |
| 102 | 977238 | 977525 | - | NZ_CP007715.1 | Actinobacillus equuli subsp. equuli |
| 103 | 4641426 | 4641719 | - | NC_016584.1 | Desulfosporosinus orientis DSM 765 |
| 104 | 1072382 | 1072669 | + | NZ_CP009610.1 | Haemophilus influenzae |
| 105 | 608373 | 608648 | - | NZ_CP007453.1 | Peptoclostridium acidaminophilum DSM 3953 |
| 106 | 644054 | 644347 | - | NZ_CP059603.1 | Levilactobacillus suantsaii |
| 107 | 2107336 | 2107632 | - | NZ_CP017111.1 | Sulfurospirillum halorespirans DSM 13726 |
| 108 | 2258877 | 2259173 | - | NZ_CP007201.1 | Sulfurospirillum multivorans DSM 12446 |
| 109 | 1227211 | 1227504 | - | NZ_CP017195.1 | Lactococcus paracarnosus |
| 110 | 2397997 | 2398263 | - | NZ_LR590481.1 | Hathewaya histolytica |
| 111 | 786335 | 786628 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 112 | 678450 | 678713 | + | NZ_CP014176.1 | Clostridium argentinense |
| 113 | 1726144 | 1726398 | - | NZ_CP017269.1 | Geosporobacter ferrireducens |
| 114 | 862384 | 862677 | + | NZ_CP018809.1 | Lactobacillus jensenii |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP046268.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03390.17 | 0.69 | 75 | 1946 | same-strand | 2-hydroxycarboxylate transporter family |
| 2 | PF08218.13 | 0.92 | 100 | 24 | same-strand | Citrate lyase ligase C-terminal domain |
| 3 | PF03328.16 | 1.0 | 109 | -3.0 | same-strand | HpcH/HpaI aldolase/citrate lyase family |
| 4 | PF04223.14 | 0.99 | 108 | 887 | same-strand | Citrate lyase, alpha subunit (CitF) |
| 5 | PF03802.16 | 0.94 | 102 | 2415 | same-strand | Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase |
| 6 | PF01874.18 | 0.87 | 95 | 2924.0 | same-strand | ATP:dephospho-CoA triphosphoribosyl transferase |
| 7 | PF00072.26 | 0.67 | 73 | 5263 | opposite-strand | Response regulator receiver domain |
| 8 | PF02518.28 | 0.67 | 73 | 3642.5 | opposite-strand | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
| 9 | PF14501.8 | 0.65 | 71 | 3641 | opposite-strand | GHKL domain |
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