* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LS483458.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF02547.17
|
1.0
|
3
|
2073
|
same-strand
|
Queuosine biosynthesis protein
|
2
|
PF01702.20
|
1.0
|
3
|
580
|
same-strand
|
Queuine tRNA-ribosyltransferase
|
3
|
PF01814.25
|
1.0
|
3
|
-3
|
same-strand
|
Hemerythrin HHE cation binding domain
|
4
|
PF02699.17
|
1.0
|
3
|
108
|
same-strand
|
Preprotein translocase subunit
|
5
|
PF13721.8
|
1.0
|
3
|
471
|
same-strand
|
SecD export protein N-terminal TM region
|
6
|
PF02355.18
|
1.0
|
3
|
1402.5
|
same-strand
|
Protein export membrane protein
|
7
|
PF07549.16
|
1.0
|
3
|
1402.5
|
same-strand
|
SecD/SecF GG Motif
|
8
|
PF01594.18
|
1.0
|
3
|
3420
|
opposite-strand
|
AI-2E family transporter
|
9
|
PF03960.17
|
1.0
|
3
|
4548
|
same-strand
|
ArsC family
|
++ More..