ProsmORF-pred
Result : A5EX91
Protein Information
Information Type Description
Protein name 50S ribosomal protein L29
NCBI Accession ID CP000513.1
Organism Dichelobacter nodosus (strain VCS1703A)
Left 1299624
Right 1299818
Strand -
Nucleotide Sequence ATGTCTTTAGAAGATTTAAAAAGTAAAGATGTTGATGCGTTGCGCGCAGAATTGCTTGAATTACGTCAAACTCAAATGAAATTGAGATTGCAAAAAGCAAGCGGTCAATTGCAACAAACACACCAAATCCGTAATGTACGCCGCGATATTGCGCGTATTAAAACTTTATTGACCCAAAAAAAGGTAAGGGTATAA
Sequence MSLEDLKSKDVDALRAELLELRQTQMKLRLQKASGQLQQTHQIRNVRRDIARIKTLLTQKKVRV
Source of smORF Swiss-Prot
Function The ORF matches to the profile of cl09943. Profile Description: N/A. This family represents the N-terminal region (approximately 8 residues) of the eukaryotic mitochondrial 39-S ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins (MRPs) are the counterparts of the cytoplasmic ribosomal proteins, in that they fulfil similar functions in protein biosynthesis. However, they are distinct in number, features and primary structure.
Pubmed ID 17468768
Domain CDD:415815
Functional Category Ribosomal_protein
Uniprot ID A5EX91
ORF Length (Amino Acid) 64
++ More..
Conservation Analysis
Conservation Analysis
No. of Species: 522
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 836316 836510 + NZ_LR134365.1 Cardiobacterium hominis
2 587711 587902 + NZ_CP070624.1 Photobacterium damselae subsp. damselae
3 410243 410434 - NZ_LT906463.1 Haemophilus pittmaniae
4 205832 206023 - NZ_CP009610.1 Haemophilus influenzae
5 301461 301652 - NZ_LS483458.1 Haemophilus haemolyticus
6 216126 216317 - NZ_LS483429.1 Haemophilus aegyptius
7 610734 610925 + NZ_CP005974.1 Photobacterium gaetbulicola Gung47
8 2171430 2171621 + NZ_CP046793.1 Vibrio metschnikovii
9 2702241 2702432 - NZ_CP016414.1 Vibrio scophthalmi
10 270171 270362 + NZ_CP071325.1 Photobacterium ganghwense
11 2620016 2620207 - NZ_CP009977.1 Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759
12 124994 125185 - NC_013456.1 Vibrio antiquarius
13 2996135 2996326 - NZ_CP031781.1 Vibrio parahaemolyticus
14 547287 547478 + NZ_CP031415.1 Saccharospirillum mangrovi
15 1021521 1021712 + NZ_LR134510.1 Actinobacillus delphinicola
16 2042885 2043076 + NZ_CP030753.1 Actinobacillus pleuropneumoniae
17 1917916 1918107 - NZ_CP007715.1 Actinobacillus equuli subsp. equuli
18 1912618 1912809 - NZ_CP009159.1 Actinobacillus suis ATCC 33415
19 4174696 4174881 - NZ_CP027860.1 Ahniella affigens
20 588214 588405 + NZ_CP015029.1 Frederiksenia canicola
21 2014082 2014273 + NZ_LT906448.1 Pasteurella dagmatis
22 1967454 1967645 - NZ_CP016604.1 Otariodibacter oris
23 616776 616967 + NZ_LS483443.1 Aggregatibacter segnis ATCC 33393
24 1149607 1149798 + NZ_LR134313.1 Neisseria canis
25 1604196 1604387 - NZ_CP015031.1 Basfia succiniciproducens
26 2001829 2002020 - NC_006300.1 [Mannheimia] succiniciproducens MBEL55E
27 697720 697911 + NZ_CP029206.1 Actinobacillus porcitonsillarum
28 2473473 2473664 + NZ_CP021376.1 Oceanisphaera avium
29 2579866 2580066 - NC_016147.2 Pseudoxanthomonas spadix BD-a59
30 491235 491426 + NZ_CP017689.1 Thalassotalea crassostreae
31 1088540 1088731 + NZ_CP028926.1 Pasteurella multocida
32 972016 972207 - NZ_CP014056.2 Grimontia hollisae
33 1643860 1644051 - NZ_CP015137.1 Dickeya solani IPO 2222
34 168231 168422 + NZ_CP006954.1 Bibersteinia trehalosi USDA-ARS-USMARC-188
35 87788 87979 + NZ_CP018804.1 Histophilus somni
36 130896 131087 - NZ_LR134167.1 Avibacterium volantium
37 1175029 1175223 - NZ_CP023559.1 Salinicola tamaricis
38 19304 19495 + NZ_CP016180.1 Pasteurella skyensis
39 2869026 2869211 - NZ_CP029843.1 Lysobacter maris
40 4198178 4198369 - NC_018691.1 Alcanivorax dieselolei B5
41 111909 112103 - NZ_CP072844.1 Psychrosphaera aestuarii
42 127507 127698 + NC_012691.1 Tolumonas auensis DSM 9187
43 2142891 2143076 - NZ_AP018560.1 Aerosticca soli
44 1192459 1192650 - NZ_LR134327.1 Aggregatibacter aphrophilus ATCC 33389
45 369505 369696 + NZ_CP051183.1 Bermanella marisrubri
46 2042519 2042710 + NZ_CP021377.1 Oceanisphaera profunda
47 4402280 4402471 - NZ_CP009125.1 Pectobacterium atrosepticum
48 2269486 2269671 + NZ_CP060820.1 Lysobacter solisilvae (ex Woo and Kim 2020)
49 2056119 2056310 - NZ_CP006944.1 Mannheimia varigena USDA-ARS-USMARC-1312
50 334585 334776 - NZ_CP046531.1 Mannheimia ovis
51 538683 538874 + NZ_CP061280.1 Mannheimia bovis
52 363087 363278 - NZ_CP055305.1 Mannheimia pernigra
53 1593665 1593856 + NC_011852.1 Glaesserella parasuis SH0165
54 2548405 2548596 - NC_021883.1 Mannheimia haemolytica USMARC_2286
55 2096378 2096569 - NZ_CP016605.1 Bisgaardia hudsonensis
56 905183 905374 + NZ_CP015425.1 [Haemophilus] ducreyi
57 457645 457836 - NZ_CP022355.1 Paraphotobacterium marinum
58 2046678 2046863 - NZ_CP014841.1 Dyella thiooxydans
59 4255203 4255394 - NZ_CP050150.1 Hafnia alvei
60 1858973 1859158 + NZ_CP060731.1 Pseudoxanthomonas mexicana
61 303456 303647 + NZ_CP031416.1 Gallaecimonas mangrovi
62 132456 132647 + NZ_CP014226.1 Halomonas chromatireducens
63 108042 108233 + NZ_CP015581.1 Tatumella citrea
64 3004677 3004862 - NZ_CP015249.1 Dokdonella koreensis DS-123
65 2685988 2686173 - NZ_CP041242.1 Lysobacter alkalisoli
66 167294 167485 + NZ_CP011041.1 Pseudoalteromonas tetraodonis
67 172239 172430 + NZ_CP011030.1 Pseudoalteromonas issachenkonii
68 180566 180757 + NZ_CP033065.1 Pseudoalteromonas agarivorans
69 248415 248606 + NZ_CP032090.1 Pseudoalteromonas donghaensis
70 183524 183715 + NZ_CP023464.1 Pseudoalteromonas atlantica
71 179328 179519 + NZ_CP011028.1 Pseudoalteromonas espejiana DSM 9414
72 3299332 3299517 - NZ_CP064030.1 Dyella caseinilytica
73 541171 541368 + NC_004556.1 Xylella fastidiosa Temecula1
74 1005022 1005216 + NC_014816.1 Asticcacaulis excentricus CB 48
75 1307762 1307962 + NZ_CP004388.1 Thalassospira xiamenensis M-5 = DSM 17429
76 4013767 4013958 - NZ_CP037951.1 Parashewanella tropica
77 1125117 1125302 + NZ_CP041046.1 Luteibacter pinisoli
78 4232379 4232570 - NZ_CP038498.1 Pectobacterium punjabense
79 2618803 2618994 + NZ_CP036200.1 Shewanella maritima
80 3442561 3442752 - NZ_CP047491.1 Microbulbifer hydrolyticus
81 2687602 2687787 + NZ_CP017480.1 Luteibacter rhizovicinus DSM 16549
82 477070 477261 + NZ_CP042220.2 Dickeya poaceiphila
83 4043447 4043638 - NZ_LT615367.1 Dickeya aquatica
84 455021 455212 + NC_012880.1 Musicola paradisiaca Ech703
85 4187248 4187439 - NZ_CP025799.1 Dickeya zeae
86 380343 380534 + NC_012912.1 Dickeya chrysanthemi Ech1591
87 4387154 4387345 - NC_014500.1 Dickeya dadantii 3937
88 3318774 3318965 + NZ_CP009460.1 Dickeya fangzhongdai
89 2048337 2048528 - NC_006512.1 Idiomarina loihiensis L2TR
90 2324977 2325168 - NZ_CP031700.1 Neisseria zalophi
91 226556 226747 + NZ_CP069213.1 Shewanella litorisediminis
92 256398 256589 + NC_008700.1 Shewanella amazonensis SB2B
93 4415545 4415736 + NZ_CP020373.1 Shewanella khirikhana
94 4677727 4677918 - NZ_CP046378.1 Shewanella algae
95 3426311 3426502 - NZ_CP027523.1 Pseudoalteromonas carrageenovora
96 3540921 3541112 - NZ_CP011025.1 Pseudoalteromonas arctica A 37-1-2
97 2069530 2069721 + NZ_CP019628.1 Pseudoalteromonas aliena
98 2139388 2139579 + NZ_CP047495.1 Pectobacterium brasiliense
99 481167 481358 + NZ_CP051652.1 Pectobacterium carotovorum
100 522216 522407 + NZ_CP065044.1 Pectobacterium aroidearum
101 4392818 4393009 - NZ_CP034938.1 Pectobacterium odoriferum
102 3205623 3205814 - NZ_CP017482.1 Pectobacterium polaris
103 4737436 4737627 + NZ_CP015749.1 Pectobacterium parmentieri
104 1134004 1134195 - NZ_CP015750.1 Pectobacterium wasabiae CFBP 3304
105 56651 56845 + NZ_CP023276.1 Polynucleobacter difficilis
106 2118064 2118255 - NZ_CP010975.1 Kangiella geojedonensis
107 2126781 2126972 - NZ_CP012418.1 Kangiella sediminilitoris
108 598823 599029 + NZ_CP014864.1 Microbulbifer thermotolerans
109 580977 581168 + NZ_AP021888.1 Thiosulfativibrio zosterae
110 214926 215117 + NC_009901.1 Shewanella pealeana ATCC 700345
111 5493839 5494030 - NC_005126.1 Photorhabdus laumondii subsp. laumondii TTO1
112 468296 468487 + NC_013166.1 Kangiella koreensis DSM 16069
113 519911 520102 - NZ_CP042382.1 Pistricoccus aurantiacus
114 1249182 1249379 + NC_007912.1 Saccharophagus degradans 2-40
115 3513824 3514015 - NZ_CP019650.1 Microbulbifer agarilyticus
116 2323492 2323683 + NZ_CP041660.1 Catenovulum sediminis
117 5303612 5303803 - NZ_CP037952.1 Parashewanella spongiae
118 4296001 4296192 - NZ_LR134376.1 Aeromonas encheleia
119 3819190 3819381 + NZ_CP051883.1 Aeromonas salmonicida
120 3434365 3434556 + NZ_CP031961.1 Pseudoalteromonas tunicata
121 418005 418196 + NZ_CP014322.1 Alteromonas addita
122 3728538 3728729 - NC_015554.1 Alteromonas naphthalenivorans
123 241847 242038 + NZ_CP022358.1 Shewanella bicestrii
124 640993 641190 + NZ_AP018724.1 Sulfurivermis fontis
125 2093029 2093226 + NZ_CP042582.1 Hypericibacter adhaerens
126 2599307 2599513 - NZ_CP044117.1 Roseomonas mucosa
127 619948 620139 + NZ_CP004387.1 Alcanivorax pacificus W11-5
128 5020391 5020582 - NC_010334.1 Shewanella halifaxensis HAW-EB4
129 2095817 2096008 + NC_011566.1 Shewanella piezotolerans WP3
130 5280155 5280346 - NC_009831.1 Shewanella sediminis HAW-EB3
131 5651808 5651999 - NC_010506.1 Shewanella woodyi ATCC 51908
132 414245 414436 + NZ_CP025120.1 Kangiella profundi
133 1577209 1577400 + NZ_CP014143.1 Microbulbifer aggregans
134 458129 458320 + NZ_CP033040.1 Thiomicrorhabdus indica
135 3824373 3824564 - NZ_CP012621.1 Zobellella denitrificans
136 4434807 4434998 - NZ_CP041036.1 Shewanella polaris
137 3028214 3028405 - NZ_CP043420.1 Kushneria phosphatilytica
138 172416 172607 + NZ_CP022272.1 Shewanella marisflavi
139 183724 183915 + NC_009092.1 Shewanella loihica PV-4
140 2016009 2016200 + NZ_CP061205.1 Kordiimonas pumila
141 1562197 1562382 + NZ_AP014940.1 Lysobacter enzymogenes
142 421894 422085 + NC_016041.1 Glaciecola nitratireducens FR1064
143 303270 303461 + NZ_CP046670.1 Alteromonas mediterranea
144 3262894 3263100 + NZ_CP025611.1 Niveispirillum cyanobacteriorum
145 2330636 2330821 + NZ_CP042218.1 Luteimonas granuli
146 4750272 4750463 - NC_014012.1 Shewanella violacea DSS12
147 407573 407764 + NZ_CP014782.1 Shewanella psychrophila
148 160761 160952 + NC_007481.1 Pseudoalteromonas translucida
149 161633 161824 + NZ_CP011036.1 Pseudoalteromonas nigrifaciens
150 5207456 5207647 - NC_010170.1 Bordetella petrii
151 1903504 1903704 + NZ_CP031555.1 Thalassospira indica
152 2000723 2000887 - NZ_CP022110.1 Nitrospirillum amazonense CBAmc
153 454278 454469 + NZ_CP008849.1 Alteromonas australica
154 361633 361824 + NZ_CP011797.1 Reinekea forsetii
155 2048862 2049059 - NZ_LR588407.1 Brevundimonas vancanneytii
156 4425406 4425597 - NZ_CP016440.1 Bordetella pseudohinzii
157 1564576 1564767 - NZ_CP021395.1 Bordetella hinzii
158 3589017 3589208 - NZ_CP040449.1 Aeromonas simiae
159 2986162 2986353 - NZ_CP044060.1 Aeromonas veronii
160 3242475 3242666 - NZ_CP065745.1 Aeromonas allosaccharophila
161 4452966 4453157 - NZ_AP022188.1 Aeromonas media
162 331747 331938 + NZ_CP050851.1 Aeromonas hydrophila
163 306492 306683 + NZ_CP040021.1 Salinivibrio kushneri
164 1092928 1093113 + NC_020541.1 Rhodanobacter denitrificans
165 983793 983984 - NZ_CP048812.1 Halomonas socia
166 36250 36441 + NC_010645.1 Bordetella avium 197N
167 2013232 2013423 - NC_018868.3 Simiduia agarivorans SA1 = DSM 21679
168 3932028 3932219 - NZ_CP065435.1 Halomonas sp. SS10-MC5
169 61304 61498 + NZ_CP030086.1 Polynucleobacter paneuropaeus
170 2951403 2951609 + NC_009719.1 Parvibaculum lavamentivorans DS-1
171 330891 331082 + NZ_AP018933.1 Zymobacter palmae
172 1365085 1365276 + NZ_LR134533.1 Neisseria weaveri
173 2466883 2467077 + NC_013960.1 Nitrosococcus halophilus Nc 4
174 2475995 2476201 - NZ_CP054619.1 Azospirillum oryzae
175 1364234 1364422 + NZ_CP023406.1 Luteimonas chenhongjianii
176 434593 434787 + NZ_AP018558.1 Hydrogenophilus thermoluteolus
177 3609109 3609300 - NC_020888.1 Thalassolituus oleivorans MIL-1
178 761757 761945 - NZ_CP021323.1 Kushneria konosiri
179 2537556 2537744 + NZ_CP021358.1 Kushneria marisflavi
180 737436 737621 + NC_017033.1 Frateuria aurantia DSM 6220
181 6344132 6344323 - NZ_CP038034.1 Achromobacter insolitus
182 4914107 4914298 - NZ_CP053986.1 Achromobacter denitrificans
183 3511207 3511398 - NZ_CP036422.1 Halioglobus maricola
184 2429500 2429703 - NZ_AP017372.2 Halorhodospira halochloris
185 1083696 1083881 + NZ_CP046603.1 Lysobacter soli
186 1855051 1855254 - NZ_CP035510.1 Haematobacter massiliensis
187 3090222 3090413 - NZ_CP028901.1 Algicoccus marinus
188 1303073 1303276 + NC_007794.1 Novosphingobium aromaticivorans DSM 12444
189 1877331 1877516 - NZ_CP071517.1 Lysobacter arenosi
190 336329 336517 + NZ_CP029556.1 Lysobacter oculi
191 857737 857943 - NZ_CP015093.1 Salipiger abyssi
192 3419826 3420017 + NZ_CP041783.1 Shewanella donghaensis
193 2457344 2457535 - NZ_LR134302.1 Achromobacter spanius
194 35499 35690 + NZ_CP043146.1 Bordetella holmesii
195 3283999 3284190 - NC_018518.1 Bordetella pertussis 18323
196 4122145 4122336 + NZ_AP019378.1 Bordetella parapertussis
197 5133382 5133573 - NZ_LR134326.1 Bordetella bronchiseptica
198 620673 620864 + NZ_CP031093.1 Hydrocarboniclastica marina
199 1929039 1929227 - NZ_CP045871.1 Litoricola lipolytica
200 3511745 3511951 + NZ_CP027407.1 Roseobacter denitrificans
201 1081875 1082075 - NZ_LR134527.1 Bartonella elizabethae
202 258061 258276 + NZ_CP060084.1 Teredinibacter haidensis
203 427260 427451 + NZ_CP034015.1 Shewanella livingstonensis
204 175062 175253 + NC_008345.1 Shewanella frigidimarina NCIMB 400
205 4742284 4742475 - NZ_CP020472.1 Shewanella japonica
206 252589 252780 + NC_016901.1 Shewanella baltica OS678
207 2692696 2692896 - NZ_LT960614.1 Hartmannibacter diazotrophicus
208 1823437 1823628 + NZ_CP040863.1 Rodentibacter heylii
209 1479849 1480049 - NC_012846.1 Bartonella grahamii as4aup
210 1602794 1602994 - NC_010161.1 Bartonella tribocorum CIP 105476
211 1195083 1195283 - NZ_CP031844.2 Bartonella krasnovii
212 832700 832900 + NZ_CP031843.2 Bartonella kosoyi
213 2465304 2465480 - NZ_CP045423.1 Microvirga thermotolerans
214 4080497 4080685 + NZ_CP043473.1 Chromobacterium paludis
215 4510721 4510909 - NC_005085.1 Chromobacterium violaceum ATCC 12472
216 2213140 2213328 + NZ_CP029495.1 Chromobacterium phragmitis
217 431300 431488 + NZ_AP019312.1 Chromobacterium haemolyticum
218 3262067 3262258 + NZ_CP037953.1 Permianibacter aggregans
219 1668908 1669108 - NZ_CP034328.1 Tabrizicola piscis
220 2332986 2333192 - NZ_CP031222.1 Aquirhabdus parva
221 400549 400755 + NZ_CP030126.1 Indioceanicola profundi
222 4254429 4254629 - NZ_CP020330.1 Martelella mediterranea DSM 17316
223 337983 338183 + NZ_CP061202.1 Rhodobacter capsulatus
224 1797435 1797641 - NZ_CP045072.1 Paracoccus kondratievae
225 3437967 3438173 - NC_015730.1 Roseobacter litoralis Och 149
226 1101074 1101265 + NZ_CP031699.1 Neisseria animalis
227 1447737 1447931 - NZ_CP011257.1 Ralstonia mannitolilytica
228 1574194 1574388 - NZ_CP012943.1 Ralstonia solanacearum
229 3376088 3376282 - NZ_CP016022.1 Ralstonia insidiosa
230 3933340 3933534 + NZ_CP046052.1 Methylocystis heyeri
231 108396 108572 - NZ_CP048630.1 Ancylobacter pratisalsi
232 328563 328757 + NZ_AP018786.1 Sutterella megalosphaeroides
233 379883 380077 + NC_012968.1 Methylotenera mobilis JLW8
234 3746377 3746571 - NZ_CP039287.1 Cupriavidus necator H16
235 2398076 2398270 - NZ_AP018725.1 Sulfuriflexus mobilis
236 936291 936482 - NZ_CP031325.1 Neisseria polysaccharea
237 1726724 1726915 - NZ_CP021520.1 Neisseria meningitidis
238 1055113 1055304 + NZ_CP012028.1 Neisseria gonorrhoeae
239 3197153 3197344 + NZ_CP014476.1 Methylomonas denitrificans
240 2508250 2508444 - NZ_CP068055.1 Sutterella wadsworthensis
241 3085026 3085220 - NZ_CP022579.1 Oryzomicrobium terrae
242 4413698 4413898 - NZ_CP060092.1 Teredinibacter purpureus
243 6025854 6026045 - NZ_CP007142.1 Gynuella sunshinyii YC6258
244 1584603 1584794 - NC_016043.1 Taylorella asinigenitalis MCE3
245 449720 449896 + NZ_CP035033.1 Hydrogenovibrio thermophilus
246 947827 948030 + NZ_CP024899.1 Rhodobaca barguzinensis
247 923787 923987 + NZ_CP010401.1 Bartonella ancashensis
248 1194749 1194949 - NC_010103.1 Brucella canis ATCC 23365
249 1195860 1196060 - NC_004310.3 Brucella suis 1330
250 1201648 1201848 - NC_009505.1 Brucella ovis ATCC 25840
251 1202175 1202375 - NC_013119.1 Brucella microti CCM 4915
252 791956 792156 + NC_003317.1 Brucella melitensis bv. 1 str. 16M
253 791946 792146 + NC_022905.1 Brucella ceti TE10759-12
254 1211118 1211318 - NC_007618.1 Brucella abortus 2308
255 1510721 1510921 + NZ_LT605585.1 Brucella inopinata
256 579978 580181 + NZ_CP068345.1 Succinivibrio dextrinosolvens
257 405477 405668 + NZ_CP061511.1 Mixta calida
258 480094 480285 + NZ_CP026377.1 Mixta gaviniae
259 522389 522586 + NC_008340.1 Alkalilimnicola ehrlichii MLHE-1
260 200815 201006 + NC_007954.1 Shewanella denitrificans OS217
261 3253548 3253751 + NC_014664.1 Rhodomicrobium vannielii ATCC 17100
262 5751208 5751399 - NZ_CP016172.1 Bordetella flabilis
263 3678880 3679071 - NC_015559.1 Marinomonas posidonica IVIA-Po-181
264 60730 60924 + NZ_CP007501.1 Polynucleobacter duraquae
265 2736720 2736917 - NZ_CP072793.1 Thiothrix unzii
266 1521457 1521666 + NC_014217.1 Starkeya novella DSM 506
267 4143040 4143240 - NZ_CP033361.1 Mesorhizobium erdmanii
268 4781534 4781734 - NZ_CP033507.1 Mesorhizobium jarvisii
269 213929 214129 + NC_002678.2 Mesorhizobium japonicum MAFF 303099
270 3533083 3533277 - NZ_CP032519.1 Cupriavidus oxalaticus
271 1774564 1774755 - NZ_CP070273.1 Marinomonas foliarum
272 2004283 2004459 + NZ_CP044331.1 Methylocystis parvus
273 6050121 6050321 + NZ_CP050296.1 Mesorhizobium huakuii
274 2021591 2021785 + NZ_CP040882.1 Sutterella faecalis
275 4740215 4740415 - NC_015675.1 Mesorhizobium opportunistum WSM2075
276 4210833 4211033 - NZ_CP015318.1 Mesorhizobium amorphae CCNWGS0123
277 4305691 4305891 - NC_019973.1 Mesorhizobium australicum WSM2073
278 1512220 1512411 + NC_017059.1 Pararhodospirillum photometricum DSM 122
279 65363 65557 + NC_009379.1 Polynucleobacter asymbioticus QLW-P1DMWA-1
280 1898935 1899156 + NC_014414.1 Parvularcula bermudensis HTCC2503
281 3193230 3193430 - NZ_CP015064.1 Mesorhizobium ciceri biovar biserrulae
282 1573548 1573742 + NC_010581.1 Beijerinckia indica subsp. indica ATCC 9039
283 3372357 3372560 - NC_007626.1 Magnetospirillum magneticum AMB-1
284 1185771 1185962 - NZ_CP019706.1 Pantoea alhagi
285 4307903 4308094 - NZ_CP061081.1 Marinomonas arctica
286 1787332 1787523 + NZ_CP065150.1 Vibrio kanaloae
287 2975575 2975766 - NC_011753.2 Vibrio atlanticus
288 312625 312816 + NZ_CP039700.1 Vibrio cyclitrophicus
289 6137520 6137711 - NZ_CP014870.1 Pseudomonas silesiensis
290 1579641 1579835 + NZ_LT615228.1 Polynucleobacter necessarius
291 1610165 1610356 - NZ_CP021060.1 Taylorella equigenitalis
292 3103463 3103669 - NC_017584.1 Rhodospirillum rubrum F11
293 839766 839957 + NC_010995.1 Cellvibrio japonicus Ueda107
294 340192 340383 + NZ_CP071320.1 Serratia ureilytica
295 4070503 4070694 - NZ_CP016948.1 Serratia surfactantfaciens
296 4842405 4842596 - NZ_CP038662.1 Serratia nematodiphila
297 5172657 5172848 - NZ_CP020038.1 Agarilytica rhodophyticola
298 2278126 2278317 - NZ_CP035688.1 Vibrio metoecus
299 2620372 2620563 - NZ_AP014524.1 Vibrio cholerae MS6
300 3096292 3096483 + NZ_CP014035.2 Vibrio fluvialis
301 1430678 1430878 - NZ_CP064063.1 Brucella anthropi
302 4424037 4424228 - NZ_CP031560.1 Dickeya dianthicola
303 6340753 6340944 - NC_007645.1 Hahella chejuensis KCTC 2396
304 395848 396039 + NZ_AP023184.1 Buttiauxella agrestis
305 461528 461719 + NZ_CP045845.1 Kluyvera intermedia
306 4176216 4176407 - NZ_CP012871.1 [Enterobacter] lignolyticus
307 428652 428843 + NZ_LR134475.1 Klebsiella aerogenes
308 236256 236447 + NZ_CP023525.1 Cedecea neteri
309 424847 425038 + NZ_CP065838.1 Klebsiella quasipneumoniae
310 4866194 4866385 - NC_016845.1 Klebsiella pneumoniae subsp. pneumoniae HS11286
311 434382 434573 + NZ_CP054254.1 Klebsiella variicola
312 426987 427178 + NZ_CP050508.1 Raoultella terrigena
313 507533 507724 + NZ_CP060111.1 Klebsiella michiganensis
314 546682 546873 + NZ_CP036175.1 Klebsiella huaxiensis
315 2851611 2851802 - NZ_CP045350.1 Vibrio aquimaris
316 6591864 6592079 - NZ_CP029550.1 Methylobacterium durans
317 1659886 1660089 - NC_022664.1 Spiribacter curvatus
318 368050 368241 + NC_011312.1 Aliivibrio salmonicida LFI1238
319 449659 449850 + NZ_CP013990.1 Leclercia adecarboxylata
320 1182275 1182466 + NZ_CP020388.1 Pluralibacter gergoviae
321 981230 981421 + NZ_CP051548.1 Phytobacter diazotrophicus
322 5142160 5142351 + NZ_CP011602.1 Phytobacter ursingii
323 233623 233814 + NZ_CP061941.1 Marinomonas algicola
324 2550717 2550920 + NZ_CP032509.1 Georhizobium profundi
325 2716930 2717121 - NZ_AP019651.1 Vibrio taketomensis
326 2853393 2853584 - NZ_CP032093.1 Vibrio alfacsensis
327 3184255 3184446 + NZ_AP019657.1 Vibrio ponticus
328 408956 409147 + NZ_CP044069.1 Vibrio vulnificus
329 280258 280449 + NZ_CP030788.1 Vibrio campbellii
330 255227 255418 + NZ_CP009354.1 Vibrio tubiashii ATCC 19109
331 2822526 2822717 - NZ_CP018312.1 Vibrio rotiferianus
332 1543835 1544026 - NZ_CP019959.1 Vibrio owensii
333 487958 488149 + NZ_CP009467.1 Vibrio harveyi
334 1956313 1956504 - NZ_CP025792.1 Vibrio jasicida 090810c
335 1267216 1267425 + NZ_CP017057.1 Erythrobacter litoralis
336 4439281 4439442 + NZ_CP016616.1 Microvirga ossetica
337 4229059 4229250 + NZ_CP028271.1 Mixta intestinalis
338 2458271 2458465 - NZ_CP014646.1 Thauera humireducens
339 1022715 1022909 + NZ_CP041352.1 Casimicrobium huifangae
340 2939668 2939859 - NZ_LT960611.1 Vibrio tapetis subsp. tapetis
341 4287145 4287345 - NZ_CP010803.1 Martelella endophytica
342 3854667 3854873 - NZ_CP019240.1 Rhodoferax antarcticus
343 282760 282951 + NZ_AP018689.1 Vibrio aphrogenes
344 317638 317829 + NZ_AP018685.1 Vibrio rumoiensis
345 4806682 4806873 - NZ_LT906479.1 Serratia ficaria
346 2903104 2903295 + NZ_CP014136.1 Gibbsiella quercinecans
347 57110 57301 - NZ_CP060244.1 Entomobacter blattae
348 4032625 4032816 + NZ_CP067057.1 Rahnella aceris
349 1115439 1115630 - NZ_CP065640.1 Serratia rubidaea
350 3799569 3799760 + NZ_CP027107.1 Cronobacter sakazakii
351 226826 227017 + NZ_CP013940.1 Cronobacter malonaticus LMG 23826
352 3886917 3887108 - NZ_CP012257.1 Cronobacter universalis NCTC 9529
353 3964272 3964463 - NZ_CP012264.1 Cronobacter condimenti 1330
354 80807 80998 + NZ_CP012268.1 Cronobacter muytjensii ATCC 51329
355 4054161 4054352 - NZ_CP012266.1 Cronobacter dublinensis subsp. dublinensis LMG 23823
356 408233 408424 + NZ_CP035129.1 Kosakonia cowanii
357 2693153 2693344 - NZ_CP016337.1 Kosakonia sacchari
358 4443214 4443405 - NZ_CP063425.1 Kosakonia pseudosacchari
359 711873 712064 - NZ_CP040428.1 Jejubacter calystegiae
360 425420 425611 + NZ_CP041247.1 Raoultella electrica
361 453854 454045 + NZ_CP014007.2 Kosakonia oryzae
362 1252813 1253004 - NZ_CP026047.1 Raoultella planticola
363 463759 463950 + NZ_CP046672.1 Raoultella ornithinolytica
364 4870195 4870386 - NZ_CP015113.1 Kosakonia radicincitans
365 4097249 4097464 - NZ_CP029553.1 Methylobacterium terrae
366 2025133 2025324 - NZ_AP019007.1 Enterobacter oligotrophicus
367 4199294 4199485 - NZ_AP022508.1 Enterobacter bugandensis
368 4292217 4292408 - NZ_CP017184.1 Enterobacter roggenkampii
369 240778 240969 + NZ_LR134201.1 Cedecea lapagei
370 3007416 3007607 + NZ_CP025034.2 Enterobacter sp. SGAir0187
371 2854778 2854969 - NZ_CP017279.1 Enterobacter ludwigii
372 4054494 4054685 + NZ_CP045769.1 Enterobacter cancerogenus
373 4628334 4628525 - NZ_CP043318.1 Enterobacter chengduensis
374 3481743 3481934 - NC_013961.1 Erwinia amylovora CFBP1430
375 316910 317101 + NZ_CP023567.1 Erwinia pyrifoliae
376 2993671 2993862 - NZ_CP023529.1 Lelliottia amnigena
377 4306684 4306875 - NC_015968.1 Enterobacter soli
378 1245874 1246077 + NZ_CP030265.1 Skermanella pratensis
379 3112398 3112589 - NZ_AP014635.1 Vibrio tritonius
380 2545787 2545978 - NZ_CP033078.1 Vibrio zhugei
381 121350 121541 - NZ_CP040990.1 Vibrio furnissii
382 4096903 4097094 - NZ_CP048796.1 Providencia vermicola
383 974058 974249 + NZ_CP029736.1 Providencia rettgeri
384 3564663 3564854 - NZ_CP031123.2 Providencia huaxiensis
385 4872761 4872952 - NC_012962.1 Photorhabdus asymbiotica
386 1682002 1682193 - NZ_CP011104.1 Photorhabdus thracensis
387 3843633 3843824 - NZ_CP054301.1 Marinomonas primoryensis
388 1193918 1194109 + NZ_CP023536.1 Providencia alcalifaciens
389 3612280 3612471 - NZ_CP034148.1 Pantoea agglomerans
390 459093 459284 + NZ_CP045720.1 Pantoea eucalypti
391 469229 469420 + NZ_CP038853.1 Pantoea vagans
392 347311 347502 + NZ_CP047475.1 Vibrio astriarenae
393 4102488 4102679 - NZ_LS483422.1 Providencia heimbachae
394 164642 164833 + NZ_CP009238.1 Basilea psittacipulmonis DSM 24701
395 2868342 2868533 - NZ_LS483250.1 Moritella yayanosii
396 4131288 4131479 + NZ_CP044399.1 Moritella marina ATCC 15381
397 152894 153085 + NZ_CP034035.1 Brenneria rubrifaciens
398 4801001 4801192 + NZ_CP014137.1 Brenneria goodwinii
399 2719273 2719464 - NZ_CP029347.1 Saliniradius amylolyticus
400 3776328 3776519 + NZ_CP051180.1 Ferrimonas lipolytica
401 4338467 4338658 - NC_008709.1 Psychromonas ingrahamii 37
402 2408481 2408687 - NC_015186.1 Acidiphilium multivorum AIU301
403 311737 311928 + NZ_LR134373.1 Yersinia pseudotuberculosis
404 1264308 1264499 - NZ_CP007230.1 Yersinia similis
405 3561515 3561706 + NZ_CP045300.1 Kosakonia arachidis
406 4893153 4893344 - NZ_CP048784.1 Serratia liquefaciens
407 4937124 4937315 - NZ_LR134494.1 Serratia quinivorans
408 5009178 5009369 - NC_015567.1 Serratia plymuthica AS9
409 1315241 1315432 - NZ_CP011254.1 Serratia fonticola
410 338646 338855 + NC_015677.1 Ramlibacter tataouinensis TTB310
411 313416 313607 + NC_014541.1 Ferrimonas balearica DSM 9799
412 319176 319367 + NZ_CP065534.1 Lonsdalea populi
413 747008 747199 - NZ_CP023009.1 Lonsdalea britannica
414 2118305 2118496 + NZ_CP042941.1 Atlantibacter hermannii
415 3951757 3951948 - NZ_LR134340.1 Escherichia marmotae
416 1441966 1442157 - NZ_CP053416.1 Salmonella bongori
417 3424575 3424766 - NZ_AP014857.1 Escherichia albertii
418 4346936 4347127 - NC_009792.1 Citrobacter koseri ATCC BAA-895
419 3830478 3830669 + NZ_CP038469.1 Citrobacter tructae
420 3591835 3592026 - NC_003197.2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
421 2832092 2832283 + NZ_CP044098.1 Citrobacter portucalensis
422 2250590 2250781 - NZ_CP033744.1 Citrobacter freundii
423 1657375 1657566 + NZ_LT556085.1 Citrobacter amalonaticus
424 4761695 4761886 + NC_013716.1 Citrobacter rodentium ICC168
425 24999 25190 - NZ_CP045205.1 Citrobacter telavivensis
426 2360154 2360369 + NC_010505.1 Methylobacterium radiotolerans JCM 2831
427 4273281 4273472 - NZ_CP027986.1 Enterobacter sichuanensis
428 4396231 4396422 - NZ_CP009756.1 Enterobacter cloacae
429 1386174 1386365 + NZ_CP007044.2 Chania multitudinisentens RB-25
430 532701 532910 + NZ_CP011805.1 Pelagerythrobacter marensis
431 963863 964057 + NC_014722.1 Mycetohabitans rhizoxinica HKI 454
432 392178 392369 + NZ_CP054058.1 Scandinavium goeteborgense
433 1199851 1200042 + NZ_CP059565.1 Neisseria wadsworthii
434 404569 404760 + NZ_CP046268.1 Vibrio spartinae
435 2590352 2590543 - NZ_CP009787.1 Yersinia rohdei
436 3007426 3007617 + NZ_CP009781.1 Yersinia aldovae 670-83
437 1568019 1568210 + NZ_CP054043.1 Yersinia mollaretii ATCC 43969
438 4364585 4364776 - NZ_CP043727.1 Yersinia canariae
439 336370 336561 + NZ_CP011118.1 Yersinia enterocolitica
440 4378691 4378882 - NZ_CP032487.1 Yersinia hibernica
441 140799 140990 + NZ_CP046293.1 Yersinia intermedia
442 3486478 3486669 - NZ_FO704551.1 Xenorhabdus poinarii G6
443 275720 275911 + NZ_FO704550.1 Xenorhabdus doucetiae
444 3165816 3166007 - NZ_CP060401.1 Xenorhabdus nematophila
445 4192449 4192640 - NZ_CP072455.1 Xenorhabdus budapestensis
446 3161347 3161538 - NZ_CP016176.1 Xenorhabdus hominickii
447 424113 424304 + NZ_LN907827.1 Erwinia gerundensis
448 2446180 2446371 - NZ_CP049115.1 Pantoea stewartii
449 459615 459806 + NC_017554.1 Pantoea ananatis PA13
450 4586657 4586848 - NC_014306.1 Erwinia billingiae Eb661
451 3528382 3528573 - NC_010694.1 Erwinia tasmaniensis Et1/99
452 138839 139030 + NZ_CP047349.1 Proteus terrae subsp. cibarius
453 3586908 3587099 + NC_010554.1 Proteus mirabilis HI4320
454 1382318 1382524 + NZ_CP015963.1 Altererythrobacter ishigakiensis
455 2462093 2462284 - NZ_CP022741.1 Vibrio qinghaiensis
456 1708198 1708389 + NZ_CP026364.1 Proteus hauseri
457 4062580 4062771 - NC_013892.1 Xenorhabdus bovienii SS-2004
458 3304652 3304846 - NZ_CP043869.1 Neptunomonas concharum
459 2106696 2106887 - NZ_CP059567.1 Neisseria shayeganii
460 4311493 4311696 - NZ_CP006644.1 Sphingomonas sanxanigenens DSM 19645 = NX02
461 483975 484166 + NC_007963.1 Chromohalobacter salexigens DSM 3043
462 522733 522936 + NC_006526.2 Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
463 3215638 3215811 - NZ_CP025086.1 Methylovirgula ligni
464 3130313 3130471 - NC_005966.1 Acinetobacter baylyi ADP1
465 313484 313675 + NC_017910.1 Shimwellia blattae DSM 4481 = NBRC 105725
466 2217767 2217958 + NZ_CP072133.1 Pseudoalteromonas xiamenensis
467 686181 686375 + NZ_AP012547.1 Sulfuritalea hydrogenivorans sk43H
468 483191 483382 + NZ_CP006569.1 Sodalis praecaptivus
469 2369859 2370050 - NZ_CP057657.1 Escherichia fergusonii
470 3448568 3448759 - NC_000913.3 Escherichia coli str. K-12 substr. MG1655
471 4183708 4183899 - NC_002695.2 Escherichia coli O157:H7 str. Sakai
472 2525517 2525708 + NZ_CP011078.1 Yersinia ruckeri
473 489225 489416 + NZ_CP034036.1 Brenneria nigrifluens DSM 30175 = ATCC 13028
474 3587043 3587234 - NZ_CP013187.1 Pseudoalteromonas phenolica
475 3432951 3433142 - NC_004337.2 Shigella flexneri 2a str. 301
476 3078565 3078765 - NZ_CP042345.1 Novosphingobium ginsenosidimutans
477 376326 376517 + NZ_CP061527.1 Shigella dysenteriae
478 2956380 2956574 - NZ_CP049134.1 Paraburkholderia tropica
479 1388177 1388365 + NZ_CP021106.3 Nitrosospira lacus
480 3330787 3330978 - NZ_CP029185.2 Limnobaculum parvum
481 373238 373429 + NZ_LS483470.1 Leminorella richardii
482 308899 309090 + NZ_LR134531.1 Pragia fontium
483 4878006 4878197 - NZ_CP015839.1 Marinobacterium aestuarii
484 1001639 1001833 + NZ_CP009727.1 Burkholderia mallei
485 2502581 2502775 + NZ_CP035900.1 Burkholderia glumae
486 3497022 3497216 - NC_007651.1 Burkholderia thailandensis E264
487 2028071 2028265 + NZ_CP008781.1 Burkholderia pseudomallei
488 2004555 2004749 + NZ_CP009555.1 Burkholderia oklahomensis C6786
489 305465 305659 + NZ_CP002580.1 Burkholderia plantarii
490 209708 209899 + NZ_AP022843.1 Halomonas hydrothermalis
491 1512034 1512225 + NZ_CP072425.1 Pseudoalteromonas viridis
492 2885966 2886160 - NZ_CP046909.1 Paraburkholderia acidiphila
493 2912910 2913104 - NZ_CP046913.1 Paraburkholderia acidisoli
494 173671 173862 + NZ_CP009056.1 Frischella perrara
495 157075 157266 + NZ_CP007445.1 Gilliamella apicola
496 253756 253947 + NZ_CP011039.1 Pseudoalteromonas spongiae UST010723-006
497 965433 965624 + NZ_CP009888.1 Pseudoalteromonas piratica
498 1660255 1660446 - NZ_CP052766.1 Alteromonas pelagimontana
499 1918174 1918365 + NZ_CP012362.1 Oblitimonas alkaliphila
500 4143651 4143842 - NZ_CP034752.1 Jinshanibacter zhutongyuii
501 372941 373132 + NZ_CP013106.1 Halomonas huangheensis
502 2014327 2014518 + NZ_CP023706.1 Edwardsiella tarda
503 287288 287479 + NZ_CP016043.1 Edwardsiella hoshinae
504 3478365 3478556 - NC_012779.2 Edwardsiella ictaluri 93-146
505 1416862 1417053 - NZ_CP006664.1 Edwardsiella anguillarum ET080813
506 879094 879285 - NC_003910.7 Colwellia psychrerythraea 34H
507 237269 237460 + NZ_CP028897.1 Dongshaea marina
508 3298982 3299176 - NZ_CP012373.2 Beggiatoa leptomitoformis
509 2204980 2205171 + NZ_CP020465.1 Cognaticolwellia beringensis
510 1992056 1992247 - NZ_CP034759.1 Litorilituus sediminis
511 290670 290861 + NZ_CP031769.1 Salinimonas sediminis
512 3846215 3846406 - NZ_CP036536.1 Salinimonas lutimaris
513 639197 639391 + NZ_CP025682.1 Azoarcus pumilus
514 936024 936224 - NZ_CP012371.1 Nitrosospira briensis C-128
515 3824708 3824902 - NZ_CP016210.1 Azoarcus olearius
516 2469723 2469893 + NZ_CP077717.1 Saccharolobus shibatae B12
517 1255832 1256020 + NZ_CP064781.1 Azospira restricta
518 2292500 2292700 - NZ_CP013816.1 Piscirickettsia salmonis
519 383174 383350 + NZ_AP020335.1 Hydrogenovibrio marinus
520 1896208 1896402 + NZ_CP018839.1 Thauera chlorobenzoica
521 439870 440061 + NZ_CP054020.1 Thiomicrorhabdus xiamenensis
522 2907834 2908028 - NZ_CP028339.1 Thauera aromatica K172
523 5032493 5032663 - NZ_CP017147.1 Bosea vaviloviae
++ More..
Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NZ_CP070624.1
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF03947.20 0.98 514 1784 same-strand Ribosomal Proteins L2, C-terminal domain
2 PF00181.25 0.98 514 1784 same-strand Ribosomal Proteins L2, RNA binding domain
3 PF00203.23 0.98 511 1489.0 same-strand Ribosomal protein S19
4 PF00189.22 1.0 520 423 same-strand Ribosomal protein S3, C-terminal domain
5 PF07650.19 1.0 520 423 same-strand KH domain
6 PF17136.6 0.89 466 802 same-strand Ribosomal proteins 50S L24/mitochondrial 39S L24
7 PF00673.23 0.89 464 1131 same-strand ribosomal L5P family C-terminus
8 PF00281.21 0.89 464 1131 same-strand Ribosomal protein L5
9 PF00253.23 0.85 445 1684.0 same-strand Ribosomal protein S14p/S29e
10 PF00237.21 0.99 518 1142 same-strand Ribosomal protein L22p/L17e
11 PF00252.20 0.98 511 0.0 same-strand Ribosomal protein L16p/L10e
12 PF00366.22 1.0 521 0.0 same-strand Ribosomal protein S17
13 PF00238.21 0.89 467 419.0 same-strand Ribosomal protein L14p/L23e
14 PF00467.31 0.66 347 801.0 same-strand KOW motif
++ More..