* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LS483429.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF17848.3
|
0.75
|
3
|
5181
|
same-strand
|
Acetyl-coA carboxylase zinc finger domain
|
2
|
PF00595.26
|
0.75
|
3
|
3595
|
opposite-strand
|
PDZ domain
|
3
|
PF13365.8
|
0.75
|
3
|
3595
|
opposite-strand
|
Trypsin-like peptidase domain
|
4
|
PF13180.8
|
0.75
|
3
|
3595
|
opposite-strand
|
PDZ domain
|
5
|
PF17820.3
|
0.75
|
3
|
3595
|
opposite-strand
|
PDZ domain
|
6
|
PF00089.28
|
0.75
|
3
|
3595
|
opposite-strand
|
Trypsin
|
7
|
PF03461.17
|
1.0
|
4
|
76.0
|
same-strand
|
TRCF domain
|
8
|
PF02559.18
|
1.0
|
4
|
76.0
|
same-strand
|
CarD-like/TRCF domain
|
9
|
PF17757.3
|
1.0
|
4
|
76.0
|
same-strand
|
UvrB interaction domain
|
10
|
PF00270.31
|
1.0
|
4
|
76.0
|
same-strand
|
DEAD/DEAH box helicase
|
11
|
PF00271.33
|
1.0
|
4
|
76.0
|
same-strand
|
Helicase conserved C-terminal domain
|
12
|
PF04851.17
|
1.0
|
4
|
76.0
|
same-strand
|
Type III restriction enzyme, res subunit
|
13
|
PF05127.16
|
1.0
|
4
|
-3.0
|
same-strand
|
Helicase
|
14
|
PF00583.27
|
0.75
|
3
|
-3
|
same-strand
|
Acetyltransferase (GNAT) family
|
15
|
PF08351.13
|
0.75
|
3
|
-3
|
same-strand
|
Domain of unknown function (DUF1726)
|
16
|
PF04247.14
|
0.75
|
3
|
1972
|
same-strand
|
Invasion gene expression up-regulator, SirB
|
17
|
PF00005.29
|
1.0
|
4
|
2374.5
|
same-strand
|
ABC transporter
|
18
|
PF12848.9
|
0.75
|
3
|
2374
|
same-strand
|
ABC transporter
|
++ More..