Result : P43967
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein HI_0233 |
| NCBI Accession ID | L42023.1 |
| Organism | Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) |
| Left | 264984 |
| Right | 265136 |
| Strand | + |
| Nucleotide Sequence | ATGTTAAAACGTAAAACTTTTCTTAAAAAGAAAGCTAATTTACAACAAAGTTCTTTATCACGTAATCTACGTTTAAGACGTTTAAAACACCGCAAACAACAACAATTTTCGAGACATTCATTACAATTTGTCGTACAAGAAATTTGTTGCTAA |
| Sequence | MLKRKTFLKKKANLQQSSLSRNLRLRRLKHRKQQQFSRHSLQFVVQEICC |
| Source of smORF | Swiss-Prot |
| Function | |
| Pubmed ID | 7542800 |
| Domain | |
| Functional Category | Others |
| Uniprot ID | P43967 |
| ORF Length (Amino Acid) | 50 |
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| Conservation Analysis |
No. of Species: 9
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 914871 | 915023 | - | NZ_LS483429.1 | Haemophilus aegyptius |
| 2 | 827468 | 827620 | - | NZ_CP009610.1 | Haemophilus influenzae |
| 3 | 765135 | 765287 | - | NZ_LS483458.1 | Haemophilus haemolyticus |
| 4 | 1238322 | 1238471 | + | NZ_CP040863.1 | Rodentibacter heylii |
| 5 | 255358 | 255507 | + | NZ_LT906463.1 | Haemophilus pittmaniae |
| 6 | 977123 | 977275 | - | NZ_CP018804.1 | Histophilus somni |
| 7 | 1448055 | 1448201 | + | NZ_CP028926.1 | Pasteurella multocida |
| 8 | 2197215 | 2197349 | - | NZ_LR134167.1 | Avibacterium volantium |
| 9 | 308166 | 308312 | + | NZ_LT906448.1 | Pasteurella dagmatis |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LS483429.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01464.22 | 1.0 | 9 | 10 | same-strand | Transglycosylase SLT domain |
| 2 | PF00497.22 | 1.0 | 9 | 10 | same-strand | Bacterial extracellular solute-binding proteins, family 3 |
| 3 | PF00270.31 | 0.78 | 7 | 1623 | same-strand | DEAD/DEAH box helicase |
| 4 | PF00271.33 | 0.78 | 7 | 1623 | same-strand | Helicase conserved C-terminal domain |
| 5 | PF03880.17 | 0.67 | 6 | 1597.0 | same-strand | DbpA RNA binding domain |
| 6 | PF01138.23 | 0.67 | 6 | 4558.0 | same-strand | 3' exoribonuclease family, domain 1 |
| 7 | PF03726.16 | 0.67 | 6 | 4558.0 | same-strand | Polyribonucleotide nucleotidyltransferase, RNA binding domain |
| 8 | PF03725.17 | 0.67 | 6 | 4558.0 | same-strand | 3' exoribonuclease family, domain 2 |
| 9 | PF00575.25 | 0.67 | 6 | 4558.0 | same-strand | S1 RNA binding domain |
| 10 | PF00013.31 | 0.67 | 6 | 4558.0 | same-strand | KH domain |
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