* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LS483429.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01464.22
|
1.0
|
9
|
10
|
same-strand
|
Transglycosylase SLT domain
|
2
|
PF00497.22
|
1.0
|
9
|
10
|
same-strand
|
Bacterial extracellular solute-binding proteins, family 3
|
3
|
PF00270.31
|
0.78
|
7
|
1623
|
same-strand
|
DEAD/DEAH box helicase
|
4
|
PF00271.33
|
0.78
|
7
|
1623
|
same-strand
|
Helicase conserved C-terminal domain
|
5
|
PF03880.17
|
0.67
|
6
|
1597.0
|
same-strand
|
DbpA RNA binding domain
|
6
|
PF01138.23
|
0.67
|
6
|
4558.0
|
same-strand
|
3' exoribonuclease family, domain 1
|
7
|
PF03726.16
|
0.67
|
6
|
4558.0
|
same-strand
|
Polyribonucleotide nucleotidyltransferase, RNA binding domain
|
8
|
PF03725.17
|
0.67
|
6
|
4558.0
|
same-strand
|
3' exoribonuclease family, domain 2
|
9
|
PF00575.25
|
0.67
|
6
|
4558.0
|
same-strand
|
S1 RNA binding domain
|
10
|
PF00013.31
|
0.67
|
6
|
4558.0
|
same-strand
|
KH domain
|
++ More..