* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP009610.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01432.22
|
1.0
|
2
|
3797.5
|
same-strand
|
Peptidase family M3
|
2
|
PF19310.1
|
1.0
|
2
|
3797.5
|
same-strand
|
Neurolysin/Thimet oligopeptidase, N-terminal domain
|
3
|
PF04304.15
|
1.0
|
2
|
3316.5
|
opposite-strand
|
Protein of unknown function (DUF454)
|
4
|
PF00496.24
|
1.0
|
2
|
1779.5
|
opposite-strand
|
Bacterial extracellular solute-binding proteins, family 5 Middle
|
5
|
PF00925.22
|
1.0
|
2
|
813.5
|
same-strand
|
GTP cyclohydrolase II
|
6
|
PF01569.23
|
1.0
|
2
|
16.0
|
opposite-strand
|
PAP2 superfamily
|
7
|
PF14378.8
|
1.0
|
2
|
16.0
|
opposite-strand
|
PAP2 superfamily
|
8
|
PF02086.17
|
1.0
|
2
|
964.5
|
same-strand
|
D12 class N6 adenine-specific DNA methyltransferase
|
9
|
PF01761.22
|
1.0
|
2
|
1826.5
|
same-strand
|
3-dehydroquinate synthase
|
10
|
PF01202.24
|
1.0
|
2
|
2934.5
|
same-strand
|
Shikimate kinase
|
11
|
PF13238.8
|
1.0
|
2
|
2934.5
|
same-strand
|
AAA domain
|
12
|
PF02872.20
|
1.0
|
2
|
3761.0
|
same-strand
|
5'-nucleotidase, C-terminal domain
|
13
|
PF00149.30
|
1.0
|
2
|
3761.0
|
same-strand
|
Calcineurin-like phosphoesterase
|
++ More..