Result : A5CXK6
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L23 |
| NCBI Accession ID | AP009247.1 |
| Organism | Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) |
| Left | 182940 |
| Right | 183230 |
| Strand | + |
| Nucleotide Sequence | ATGAATCAAGAAAAGGTATTAAAAACCTTATTAATGCCCATCGTTTCTGAGAAAATGACTATGCTATCAGCGAATAATCAATACGCATTTAAGGTTCGTATGGATAGTTCTAAAAGAGAAATTAAAGCTGCAGTTGAAATATTATTGGGGGTGAATGTTGAAAATGTGACAACTTTAATTGTTAAAGGTAAGAAAAAAATATTTAAAGGCAGGACTGGGTCGCGTCCAAATTGGAAAAAGGCAATGGTAAAAGTGTCTGCAGGCCAAATAATTGATGTGAATAGAACTTAA |
| Sequence | MNQEKVLKTLLMPIVSEKMTMLSANNQYAFKVRMDSSKREIKAAVEILLGVNVENVTTLIVKGKKKIFKGRTGSRPNWKKAMVKVSAGQIIDVNRT |
| Source of smORF | Swiss-Prot |
| Function | One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome. {ECO:0000255|HAMAP-Rule:MF_01369}. |
| Pubmed ID | 17493812 |
| Domain | CDD:412311 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | A5CXK6 |
| ORF Length (Amino Acid) | 96 |
++ More..
| Conservation Analysis |
No. of Species: 154
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2129582 | 2129878 | - | NZ_CP012418.1 | Kangiella sediminilitoris |
| 2 | 2120865 | 2121161 | - | NZ_CP010975.1 | Kangiella geojedonensis |
| 3 | 2602153 | 2602407 | - | NZ_CP044117.1 | Roseomonas mucosa |
| 4 | 411334 | 411630 | + | NZ_CP025120.1 | Kangiella profundi |
| 5 | 465385 | 465681 | + | NC_013166.1 | Kangiella koreensis DSM 16069 |
| 6 | 2901043 | 2901336 | - | NC_017956.1 | Tistrella mobilis KA081020-065 |
| 7 | 2400297 | 2400593 | - | NZ_AP021889.1 | Thiosulfatimonas sediminis |
| 8 | 397586 | 397879 | + | NZ_CP030126.1 | Indioceanicola profundi |
| 9 | 2210251 | 2210559 | + | NZ_CP029495.1 | Chromobacterium phragmitis |
| 10 | 428411 | 428719 | + | NZ_AP019312.1 | Chromobacterium haemolyticum |
| 11 | 4077608 | 4077916 | + | NZ_CP043473.1 | Chromobacterium paludis |
| 12 | 815406 | 815699 | + | NZ_CP007031.1 | Marichromatium purpuratum 984 |
| 13 | 4200994 | 4201290 | - | NC_018691.1 | Alcanivorax dieselolei B5 |
| 14 | 4513490 | 4513798 | - | NC_005085.1 | Chromobacterium violaceum ATCC 12472 |
| 15 | 360716 | 361012 | + | NZ_AP018722.1 | Thiomicrorhabdus aquaedulcis |
| 16 | 617029 | 617331 | + | NZ_CP004387.1 | Alcanivorax pacificus W11-5 |
| 17 | 168904 | 169200 | + | NZ_CP007030.1 | Thiomicrospira aerophila AL3 |
| 18 | 133402 | 133698 | + | NC_015581.1 | Thiomicrospira cyclica ALM1 |
| 19 | 363493 | 363789 | + | NZ_CP040602.1 | Thiomicrorhabdus sediminis |
| 20 | 3566938 | 3567246 | + | NZ_CP017707.1 | Chromobacterium vaccinii |
| 21 | 977134 | 977427 | + | NZ_CP040517.1 | Luteithermobacter gelatinilyticus |
| 22 | 638096 | 638392 | + | NZ_AP018724.1 | Sulfurivermis fontis |
| 23 | 455237 | 455533 | + | NZ_CP033040.1 | Thiomicrorhabdus indica |
| 24 | 1572991 | 1573299 | + | NZ_CP039731.1 | Aquitalea aquatilis |
| 25 | 3961798 | 3962106 | - | NZ_CP047241.1 | Aquitalea denitrificans |
| 26 | 107934 | 108248 | + | NZ_CP038018.1 | Eikenella exigua |
| 27 | 1217757 | 1218071 | + | NZ_LT906482.1 | Eikenella corrodens |
| 28 | 1361260 | 1361559 | + | NZ_CP023406.1 | Luteimonas chenhongjianii |
| 29 | 380264 | 380560 | + | NZ_AP020335.1 | Hydrogenovibrio marinus |
| 30 | 1877751 | 1878005 | + | NZ_CP024201.1 | Caulobacter mirabilis |
| 31 | 2400868 | 2401158 | - | NZ_AP018725.1 | Sulfuriflexus mobilis |
| 32 | 1192463 | 1192759 | + | NZ_CP062147.1 | Komagataeibacter hansenii |
| 33 | 2688797 | 2689093 | - | NZ_CP041242.1 | Lysobacter alkalisoli |
| 34 | 1129797 | 1130051 | + | NZ_CP029479.1 | Phenylobacterium parvum |
| 35 | 114716 | 115003 | - | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 36 | 3281401 | 3281694 | - | NZ_CP041025.1 | Paremcibacter congregatus |
| 37 | 5197660 | 5197959 | - | NZ_CP071706.1 | Pseudomonas donghuensis |
| 38 | 6420409 | 6420708 | - | NZ_CP048833.1 | Pseudomonas multiresinivorans |
| 39 | 3516643 | 3516939 | - | NZ_CP019650.1 | Microbulbifer agarilyticus |
| 40 | 688866 | 689165 | + | NZ_CP046621.1 | Pseudomonas alkylphenolica |
| 41 | 2470553 | 2470855 | + | NZ_CP021376.1 | Oceanisphaera avium |
| 42 | 1098195 | 1098503 | + | NZ_CP031699.1 | Neisseria animalis |
| 43 | 2210112 | 2210348 | + | NZ_CP058952.1 | Chitinibacter fontanus |
| 44 | 2990131 | 2990427 | + | NZ_CP048711.1 | Kineobactrum salinum |
| 45 | 2380748 | 2381062 | - | NZ_CP007446.1 | Snodgrassella alvi wkB2 |
| 46 | 1196969 | 1197283 | + | NZ_CP059565.1 | Neisseria wadsworthii |
| 47 | 3445380 | 3445676 | - | NZ_CP047491.1 | Microbulbifer hydrolyticus |
| 48 | 836853 | 837149 | + | NC_010995.1 | Cellvibrio japonicus Ueda107 |
| 49 | 1793292 | 1793606 | - | NZ_CP039887.1 | Neisseria subflava |
| 50 | 1953535 | 1953849 | + | NZ_CP039886.1 | Neisseria flavescens |
| 51 | 1915280 | 1915579 | + | NZ_CP012362.1 | Oblitimonas alkaliphila |
| 52 | 1362201 | 1362515 | + | NZ_LR134533.1 | Neisseria weaveri |
| 53 | 595900 | 596196 | + | NZ_CP014864.1 | Microbulbifer thermotolerans |
| 54 | 881956 | 882231 | - | NC_003910.7 | Colwellia psychrerythraea 34H |
| 55 | 450114 | 450410 | + | NC_008260.1 | Alcanivorax borkumensis SK2 |
| 56 | 3416760 | 3417059 | + | NZ_CP045302.1 | Azotobacter salinestris |
| 57 | 2713584 | 2713817 | - | NZ_CP038439.1 | Paracoccus liaowanqingii |
| 58 | 3959518 | 3959817 | - | NZ_CP011835.1 | Azotobacter chroococcum |
| 59 | 644975 | 645292 | + | NC_014006.1 | Sphingobium japonicum UT26S |
| 60 | 608452 | 608751 | + | NC_012560.1 | Azotobacter vinelandii DJ |
| 61 | 2442162 | 2442458 | - | NC_011901.1 | Thioalkalivibrio sulfidiphilus HL-EbGr7 |
| 62 | 1574285 | 1574581 | + | NZ_CP014143.1 | Microbulbifer aggregans |
| 63 | 2967914 | 2968168 | + | NZ_CP026100.1 | Caulobacter flavus |
| 64 | 821138 | 821437 | + | NZ_CP014158.1 | Pseudomonas citronellolis |
| 65 | 4765713 | 4766012 | - | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 66 | 2229780 | 2230052 | - | NZ_CP060718.1 | Sphingomonas lutea |
| 67 | 3259076 | 3259375 | + | NZ_CP037953.1 | Permianibacter aggregans |
| 68 | 4897872 | 4898171 | + | NZ_CP048810.1 | Pseudomonas bijieensis |
| 69 | 6062389 | 6062688 | - | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 70 | 418995 | 419294 | + | NC_016041.1 | Glaciecola nitratireducens FR1064 |
| 71 | 1476567 | 1476863 | - | NZ_CP022684.1 | Ketobacter alkanivorans |
| 72 | 2202086 | 2202361 | + | NZ_CP020465.1 | Cognaticolwellia beringensis |
| 73 | 626364 | 626663 | + | NZ_CP043311.1 | Pseudomonas lalkuanensis |
| 74 | 1994871 | 1995146 | - | NZ_CP034759.1 | Litorilituus sediminis |
| 75 | 415100 | 415399 | + | NZ_CP014322.1 | Alteromonas addita |
| 76 | 3731335 | 3731634 | - | NC_015554.1 | Alteromonas naphthalenivorans |
| 77 | 1457211 | 1457465 | - | NZ_CP054836.1 | Oricola thermophila |
| 78 | 694379 | 694678 | + | NZ_CP047698.1 | Pseudomonas knackmussii |
| 79 | 1421030 | 1421332 | + | NC_011144.1 | Phenylobacterium zucineum HLK1 |
| 80 | 3849007 | 3849306 | - | NZ_CP036536.1 | Salinimonas lutimaris |
| 81 | 390700 | 391002 | - | NZ_AP022345.1 | Fluviibacter phosphoraccumulans |
| 82 | 1039333 | 1039632 | + | NZ_CP060009.1 | Pseudomonas sediminis |
| 83 | 1472024 | 1472323 | - | NZ_CP070505.1 | Pseudomonas toyotomiensis |
| 84 | 2135229 | 2135498 | - | NZ_AP017655.1 | Sphingobium cloacae |
| 85 | 3260448 | 3260714 | + | NZ_CP018221.1 | Tardibacter chloracetimidivorans |
| 86 | 2633957 | 2634190 | + | NZ_CP072611.1 | Aureimonas populi |
| 87 | 1859046 | 1859315 | - | NZ_CP035510.1 | Haematobacter massiliensis |
| 88 | 1670213 | 1670527 | + | NZ_CP031252.1 | Neisseria elongata |
| 89 | 2013083 | 2013337 | + | NZ_CP061205.1 | Kordiimonas pumila |
| 90 | 584782 | 585084 | + | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 91 | 451378 | 451677 | + | NZ_CP008849.1 | Alteromonas australica |
| 92 | 300370 | 300669 | + | NZ_CP046670.1 | Alteromonas mediterranea |
| 93 | 1146726 | 1147040 | + | NZ_LR134313.1 | Neisseria canis |
| 94 | 2109456 | 2109770 | - | NZ_CP059567.1 | Neisseria shayeganii |
| 95 | 460470 | 460772 | - | NZ_CP022355.1 | Paraphotobacterium marinum |
| 96 | 623867 | 624166 | + | NZ_AP014862.1 | Pseudomonas furukawaii |
| 97 | 2051124 | 2051423 | - | NC_006512.1 | Idiomarina loihiensis L2TR |
| 98 | 424867 | 425100 | + | NZ_CP012661.1 | Defluviimonas alba |
| 99 | 854006 | 854239 | - | NZ_CP014327.1 | Halocynthiibacter arcticus |
| 100 | 974825 | 975127 | - | NZ_CP014056.2 | Grimontia hollisae |
| 101 | 1489713 | 1490015 | + | NC_014375.1 | Brevundimonas subvibrioides ATCC 15264 |
| 102 | 4889072 | 4889341 | - | NZ_CP014168.1 | Sphingomonas panacis |
| 103 | 598292 | 598525 | + | NZ_CP048788.1 | Roseobacter ponti |
| 104 | 1322111 | 1322344 | + | NZ_CP019044.1 | Salaquimonas pukyongi |
| 105 | 1759383 | 1759697 | + | NZ_CP022745.1 | Sphingobium xenophagum |
| 106 | 1708015 | 1708269 | + | NZ_CP036532.1 | Roseitalea porphyridii |
| 107 | 3500289 | 3500522 | + | NZ_CP027407.1 | Roseobacter denitrificans |
| 108 | 3452067 | 3452300 | - | NC_015730.1 | Roseobacter litoralis Och 149 |
| 109 | 3081424 | 3081687 | - | NZ_CP042345.1 | Novosphingobium ginsenosidimutans |
| 110 | 128070 | 128303 | + | NZ_CP032125.1 | Profundibacter amoris |
| 111 | 3439238 | 3439471 | + | NZ_CP049037.1 | Pseudohalocynthiibacter aestuariivivens |
| 112 | 1663050 | 1663349 | - | NZ_CP052766.1 | Alteromonas pelagimontana |
| 113 | 1674852 | 1675085 | - | NZ_CP034328.1 | Tabrizicola piscis |
| 114 | 248073 | 248306 | + | NZ_CP012160.1 | Octadecabacter temperatus |
| 115 | 2069083 | 2069316 | - | NZ_CP025430.1 | Paracoccus zhejiangensis |
| 116 | 2808162 | 2808395 | + | NZ_CP061498.1 | Roseicitreum antarcticum |
| 117 | 1185919 | 1186158 | - | NZ_CP045434.1 | Sphingomonas ginsengisoli An et al. 2013 |
| 118 | 1842364 | 1842597 | + | NC_015259.1 | Polymorphum gilvum SL003B-26A1 |
| 119 | 1089030 | 1089263 | - | NZ_CP053923.1 | Defluviicoccus vanus |
| 120 | 2219841 | 2220131 | - | NC_012982.1 | Hirschia baltica ATCC 49814 |
| 121 | 2745935 | 2746186 | - | NZ_CP041690.1 | Youhaiella tibetensis |
| 122 | 3193963 | 3194238 | + | NZ_CP009291.1 | Novosphingobium pentaromativorans US6-1 |
| 123 | 395109 | 395342 | + | NZ_CP016364.1 | Phaeobacter porticola |
| 124 | 4039966 | 4040199 | - | NC_003911.12 | Ruegeria pomeroyi DSS-3 |
| 125 | 230706 | 230939 | - | NZ_CP015421.1 | Rhodovulum sulfidophilum |
| 126 | 628309 | 628578 | - | NC_011666.1 | Methylocella silvestris BL2 |
| 127 | 4086841 | 4087074 | - | NZ_CP034588.1 | Silicimonas algicola |
| 128 | 249181 | 249414 | + | NZ_CP033219.1 | Parasedimentitalea marina |
| 129 | 1159716 | 1159949 | - | NZ_CP039964.1 | Pseudorhodobacter turbinis |
| 130 | 4213759 | 4213992 | - | NZ_CP015318.1 | Mesorhizobium amorphae CCNWGS0123 |
| 131 | 4308615 | 4308848 | - | NC_019973.1 | Mesorhizobium australicum WSM2073 |
| 132 | 4145964 | 4146197 | - | NZ_CP033361.1 | Mesorhizobium erdmanii |
| 133 | 4743139 | 4743372 | - | NC_015675.1 | Mesorhizobium opportunistum WSM2075 |
| 134 | 4784457 | 4784690 | - | NZ_CP033507.1 | Mesorhizobium jarvisii |
| 135 | 210973 | 211206 | + | NC_002678.2 | Mesorhizobium japonicum MAFF 303099 |
| 136 | 6047165 | 6047398 | + | NZ_CP050296.1 | Mesorhizobium huakuii |
| 137 | 1300133 | 1300396 | + | NC_007794.1 | Novosphingobium aromaticivorans DSM 12444 |
| 138 | 771294 | 771527 | + | NZ_CP054599.1 | Sulfitobacter pseudonitzschiae |
| 139 | 196133 | 196366 | + | NC_023135.1 | Leisingera methylohalidivorans DSM 14336 |
| 140 | 384185 | 384418 | - | NZ_CP040818.1 | Paraoceanicella profunda |
| 141 | 292503 | 292787 | - | NZ_CP059563.1 | Conchiformibius steedae |
| 142 | 567753 | 568067 | + | NZ_CP059564.1 | Alysiella filiformis |
| 143 | 2358864 | 2359178 | + | NZ_CP019448.1 | Simonsiella muelleri ATCC 29453 |
| 144 | 2538434 | 2538751 | - | NZ_CP060035.1 | Sphingobium fuliginis |
| 145 | 1449042 | 1449359 | - | NZ_CP020538.1 | Sphingobium herbicidovorans |
| 146 | 939045 | 939359 | - | NZ_CP031325.1 | Neisseria polysaccharea |
| 147 | 1930182 | 1930496 | - | NZ_LR134516.1 | Neisseria animaloris |
| 148 | 1692383 | 1692697 | + | NZ_LS483369.1 | Neisseria cinerea |
| 149 | 1729479 | 1729793 | - | NZ_CP021520.1 | Neisseria meningitidis |
| 150 | 1959488 | 1959802 | - | NZ_CP072524.1 | Neisseria sicca |
| 151 | 2499575 | 2499889 | - | NZ_LT906434.1 | Neisseria zoodegmatis |
| 152 | 1913177 | 1913491 | - | NZ_CP031253.1 | Neisseria lactamica |
| 153 | 921767 | 922075 | - | NZ_CP022278.1 | Neisseria chenwenguii |
| 154 | 648778 | 649035 | + | NZ_CP013729.1 | Roseateles depolymerans |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_013166.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00252.20 | 0.84 | 130 | 2208.0 | same-strand | Ribosomal protein L16p/L10e |
| 2 | PF00189.22 | 0.95 | 146 | 1493.0 | same-strand | Ribosomal protein S3, C-terminal domain |
| 3 | PF07650.19 | 0.95 | 146 | 1493.0 | same-strand | KH domain |
| 4 | PF00237.21 | 0.94 | 144 | 1142.0 | same-strand | Ribosomal protein L22p/L17e |
| 5 | PF00203.23 | 0.95 | 146 | 855.0 | same-strand | Ribosomal protein S19 |
| 6 | PF03947.20 | 0.98 | 151 | 14 | same-strand | Ribosomal Proteins L2, C-terminal domain |
| 7 | PF00181.25 | 0.97 | 150 | 13.5 | same-strand | Ribosomal Proteins L2, RNA binding domain |
| 8 | PF00573.24 | 0.99 | 152 | -3.0 | same-strand | Ribosomal protein L4/L1 family |
| 9 | PF00338.24 | 0.94 | 145 | 1406 | same-strand | Ribosomal protein S10p/S20e |
| 10 | PF00009.29 | 0.77 | 118 | 2590 | same-strand | Elongation factor Tu GTP binding domain |
| 11 | PF03143.19 | 0.76 | 117 | 1830 | same-strand | Elongation factor Tu C-terminal domain |
| 12 | PF03144.27 | 0.76 | 117 | 2618 | same-strand | Elongation factor Tu domain 2 |
| 13 | PF01926.25 | 0.77 | 118 | 1830 | same-strand | 50S ribosome-binding GTPase |
| 14 | PF03764.20 | 0.64 | 98 | 3058.0 | same-strand | Elongation factor G, domain IV |
| 15 | PF14492.8 | 0.64 | 98 | 3058.0 | same-strand | Elongation Factor G, domain III |
| 16 | PF00679.26 | 0.65 | 100 | 3058.0 | same-strand | Elongation factor G C-terminus |
++ More..