* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_012560.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00148.21
|
1.0
|
3
|
2562.5
|
same-strand
|
Nitrogenase component 1 type Oxidoreductase
|
2
|
PF00158.28
|
1.0
|
3
|
28.5
|
same-strand
|
Sigma-54 interaction domain
|
3
|
PF14532.8
|
1.0
|
3
|
28.5
|
same-strand
|
Sigma-54 interaction domain
|
4
|
PF01590.28
|
1.0
|
3
|
28.5
|
same-strand
|
GAF domain
|
5
|
PF02954.21
|
1.0
|
3
|
28.5
|
same-strand
|
Bacterial regulatory protein, Fis family
|
6
|
PF13185.8
|
1.0
|
3
|
28.5
|
same-strand
|
GAF domain
|
7
|
PF07728.16
|
1.0
|
3
|
28.5
|
same-strand
|
AAA domain (dynein-related subfamily)
|
8
|
PF00004.31
|
1.0
|
3
|
28.5
|
same-strand
|
ATPase family associated with various cellular activities (AAA)
|
9
|
PF13492.8
|
1.0
|
3
|
28.5
|
same-strand
|
GAF domain
|
10
|
PF01042.23
|
0.67
|
2
|
318.5
|
same-strand
|
Endoribonuclease L-PSP
|
11
|
PF13328.8
|
0.67
|
2
|
751.0
|
same-strand
|
HD domain
|
12
|
PF04607.19
|
0.67
|
2
|
751.0
|
same-strand
|
Region found in RelA / SpoT proteins
|
13
|
PF02824.23
|
0.67
|
2
|
751.0
|
same-strand
|
TGS domain
|
14
|
PF13291.8
|
0.67
|
2
|
751.0
|
same-strand
|
ACT domain
|
15
|
PF01966.24
|
0.67
|
2
|
751.0
|
same-strand
|
HD domain
|
16
|
PF01192.24
|
0.67
|
2
|
2927.5
|
same-strand
|
RNA polymerase Rpb6
|
17
|
PF00625.23
|
0.67
|
2
|
4093.0
|
same-strand
|
Guanylate kinase
|
18
|
PF13671.8
|
0.67
|
2
|
4093.0
|
same-strand
|
AAA domain
|
++ More..