Protein Information |
Information Type | Description |
---|---|
Protein name | Uncharacterized protein YwdA |
NCBI Accession ID | X73124.1 |
Organism | Bacillus subtilis (strain 168) |
Left | 55450 |
Right | 55698 |
Strand | + |
Nucleotide Sequence | TTGAATATACATGAACAGAAGATAACACCGGAATGTTTGGAAAAGGCTGCTAACCAAGTTGAAGATAAGCGAGAAGAATATAAGGATGTGCTGCTTCAGCTGAAAAAAATGCTTGGCGGAACAACGCCGCACAGTGAAACGGCGGAAATTCTCACGCGGGCATATGAACAAATGAAGGAATATGCACTTTTTGTTCAGTCGATAGAAACATTTTTGAGGAAATCTGCAAACAATTTAAAAATCAAATAA |
Sequence | MNIHEQKITPECLEKAANQVEDKREEYKDVLLQLKKMLGGTTPHSETAEILTRAYEQMKEYALFVQSIETFLRKSANNLKIK |
Source of smORF | Swiss-Prot |
Function | |
Pubmed ID | 7934828 9384377 |
Domain | |
Functional Category | Others |
Uniprot ID | P39609 |
ORF Length (Amino Acid) | 82 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 3901868 | 3902116 | - | NC_000964.3 | Bacillus subtilis subsp. subtilis str. 168 |
2 | 3787326 | 3787574 | - | NZ_CP013984.1 | Bacillus inaquosorum |
3 | 3762629 | 3762877 | - | NZ_CP033052.1 | Bacillus vallismortis |
4 | 3725844 | 3726092 | - | NZ_CP034943.1 | Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499 |
5 | 3724778 | 3725026 | - | NZ_CP048852.1 | Bacillus tequilensis |
6 | 3714248 | 3714496 | - | NZ_CP051464.1 | Bacillus mojavensis |
7 | 2337206 | 2337454 | + | NZ_CP029364.1 | Bacillus halotolerans |
8 | 286938 | 287162 | + | NZ_CP011937.1 | Bacillus velezensis |
9 | 3754976 | 3755200 | - | NZ_CP053376.1 | Bacillus amyloliquefaciens |
10 | 4043446 | 4043712 | - | NZ_CP023665.1 | Bacillus paralicheniformis |
11 | 3838131 | 3838361 | - | NC_006270.3 | Bacillus licheniformis DSM 13 = ATCC 14580 |
12 | 1849624 | 1849878 | + | NZ_CP043404.1 | Bacillus safensis |
13 | 1917210 | 1917464 | + | NZ_CP017786.1 | Bacillus xiamenensis |
14 | 3444662 | 3444916 | - | NZ_CP011150.1 | Bacillus altitudinis |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF00535.28 | 0.86 | 12 | 2642.5 | same-strand | Glycosyl transferase family 2 |
2 | PF08543.14 | 1.0 | 14 | 90.5 | opposite-strand | Phosphomethylpyrimidine kinase |
3 | PF00251.22 | 1.0 | 14 | 94.0 | same-strand | Glycosyl hydrolases family 32 N-terminal domain |
4 | PF02378.20 | 1.0 | 14 | 1537.5 | same-strand | Phosphotransferase system, EIIC |
5 | PF00367.22 | 1.0 | 14 | 1537.5 | same-strand | phosphotransferase system, EIIB |
6 | PF00874.22 | 0.93 | 13 | 3320 | same-strand | PRD domain |
7 | PF03123.17 | 0.93 | 13 | 3320 | same-strand | CAT RNA binding domain |