Result : P37614
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YhhL |
| NCBI Accession ID | U00096.3 |
| Organism | Escherichia coli (strain K12) |
| Left | 3604979 |
| Right | 3605248 |
| Strand | + |
| Nucleotide Sequence | ATGCTGATTAATATTGGTCGTTTGTTAATGCTCTGCGTTTGGGGATTTTTAATCCTCAACCTGGTGCATCCCTTCCCACGCCCGCTGAATATCTTCGTTAACGTGGCGCTGATTTTTACCGTGCTGATGCATGGTATGCAGCTGGCGCTATTGAAATCCACTTTACCGAAAGATGGCCCGCAGATGACCACCGCCGAAAAGGTACGGATTTTCCTTTTCGGCGTGTTTGAACTGCTGGCCTGGCAGAAGAAATTTAAAGTTAAAAAATAA |
| Sequence | MLINIGRLLMLCVWGFLILNLVHPFPRPLNIFVNVALIFTVLMHGMQLALLKSTLPKDGPQMTTAEKVRIFLFGVFELLAWQKKFKVKK |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl11481. Profile Description: Protein of unknown function (DUF1145). This family consists of several hypothetical bacterial proteins of unknown function. |
| Pubmed ID | 3025556 8041620 9278503 16738553 |
| Domain | CDD:416293 |
| Functional Category | Others |
| Uniprot ID | P37614 |
| ORF Length (Amino Acid) | 89 |
++ More..
| Conservation Analysis |
No. of Species: 147
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3604979 | 3605248 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 2 | 257293 | 257562 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 3 | 4324354 | 4324623 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 4 | 3575500 | 3575769 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 5 | 4102291 | 4102560 | + | NZ_LR134340.1 | Escherichia marmotae |
| 6 | 3567918 | 3568187 | + | NZ_AP014857.1 | Escherichia albertii |
| 7 | 158252 | 158521 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 8 | 4491178 | 4491447 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 9 | 1530454 | 1530723 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 10 | 3740945 | 3741214 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 11 | 1582674 | 1582943 | + | NZ_CP053416.1 | Salmonella bongori |
| 12 | 3694281 | 3694556 | - | NZ_CP038469.1 | Citrobacter tructae |
| 13 | 2685965 | 2686240 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 14 | 2388022 | 2388297 | + | NZ_CP033744.1 | Citrobacter freundii |
| 15 | 327006 | 327287 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 16 | 4602638 | 4602907 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 17 | 4575986 | 4576228 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 18 | 2823658 | 2823900 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 19 | 1985457 | 1985723 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 20 | 5003073 | 5003315 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 21 | 253300 | 253581 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 22 | 294668 | 294937 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 23 | 323563 | 323805 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 24 | 98440 | 98682 | - | NZ_CP023525.1 | Cedecea neteri |
| 25 | 107511 | 107780 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 26 | 481690 | 481965 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 27 | 4526778 | 4527026 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 28 | 104041 | 104283 | - | NZ_LR134201.1 | Cedecea lapagei |
| 29 | 2160729 | 2160950 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 30 | 299811 | 300059 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 31 | 1377796 | 1378074 | + | NZ_CP026047.1 | Raoultella planticola |
| 32 | 334754 | 335032 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 33 | 3432858 | 3433100 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 34 | 2317120 | 2317347 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 35 | 290119 | 290346 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 36 | 306344 | 306622 | - | NZ_CP050508.1 | Raoultella terrigena |
| 37 | 4445666 | 4445914 | + | NC_015968.1 | Enterobacter soli |
| 38 | 287177 | 287404 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 39 | 274225 | 274446 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 40 | 3127264 | 3127509 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 41 | 3920950 | 3921177 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 42 | 296583 | 296861 | - | NZ_CP041247.1 | Raoultella electrica |
| 43 | 301849 | 302124 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 44 | 4188900 | 4189169 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 45 | 4307896 | 4308165 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 46 | 4990605 | 4990880 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 47 | 309457 | 309732 | - | NZ_CP054254.1 | Klebsiella variicola |
| 48 | 297295 | 297573 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 49 | 4717421 | 4717690 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 50 | 181324 | 181596 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 51 | 4104670 | 4104939 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 52 | 241540 | 241773 | - | NZ_LS483470.1 | Leminorella richardii |
| 53 | 4388661 | 4388933 | + | NZ_CP050150.1 | Hafnia alvei |
| 54 | 1908179 | 1908451 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 55 | 3819838 | 3820077 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 56 | 2981637 | 2981885 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 57 | 92377 | 92646 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 58 | 4022320 | 4022589 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 59 | 4593141 | 4593368 | - | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 60 | 280395 | 280664 | - | NZ_CP061511.1 | Mixta calida |
| 61 | 4304357 | 4304602 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 62 | 3663403 | 3663672 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 63 | 203836 | 204054 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 64 | 4999986 | 5000207 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 65 | 219008 | 219280 | - | NZ_LR134494.1 | Serratia quinivorans |
| 66 | 409489 | 409767 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 67 | 351100 | 351369 | - | NZ_CP026377.1 | Mixta gaviniae |
| 68 | 2310433 | 2310705 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 69 | 202631 | 202903 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 70 | 200265 | 200537 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 71 | 387893 | 388171 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 72 | 3999924 | 4000148 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 73 | 284421 | 284690 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 74 | 318437 | 318664 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 75 | 981337 | 981567 | + | NZ_CP023009.1 | Lonsdalea britannica |
| 76 | 105041 | 105265 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 77 | 1313428 | 1313697 | + | NZ_CP019706.1 | Pantoea alhagi |
| 78 | 3692143 | 3692373 | + | NZ_CP065534.1 | Lonsdalea populi |
| 79 | 110132 | 110356 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 80 | 3576493 | 3576717 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 81 | 105511 | 105735 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 82 | 3594744 | 3595019 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 83 | 1748525 | 1748764 | - | NZ_CP047495.1 | Pectobacterium brasiliense |
| 84 | 136182 | 136406 | - | NZ_CP065044.1 | Pectobacterium aroidearum |
| 85 | 4796883 | 4797107 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 86 | 841003 | 841245 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 87 | 4237742 | 4237981 | + | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 88 | 182588 | 182860 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 89 | 4669203 | 4669475 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 90 | 3418808 | 3419047 | + | NZ_CP029185.2 | Limnobaculum parvum |
| 91 | 1529248 | 1529523 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 92 | 3950694 | 3950918 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 93 | 1556642 | 1556866 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 94 | 2015771 | 2016043 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 95 | 4085964 | 4086233 | - | NZ_CP028271.1 | Mixta intestinalis |
| 96 | 4850220 | 4850492 | + | NZ_CP071320.1 | Serratia ureilytica |
| 97 | 1760702 | 1760974 | - | NZ_CP065640.1 | Serratia rubidaea |
| 98 | 837672 | 837956 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 99 | 212731 | 213003 | - | NZ_LT906479.1 | Serratia ficaria |
| 100 | 154083 | 154337 | - | NZ_CP042220.2 | Dickeya poaceiphila |
| 101 | 213375 | 213611 | - | NZ_LR134531.1 | Pragia fontium |
| 102 | 3008360 | 3008587 | - | NZ_CP009460.1 | Dickeya fangzhongdai |
| 103 | 145723 | 145950 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 104 | 4427366 | 4427638 | + | NZ_CP046293.1 | Yersinia intermedia |
| 105 | 4709650 | 4709883 | + | NZ_CP031560.1 | Dickeya dianthicola |
| 106 | 4539299 | 4539532 | + | NZ_CP025799.1 | Dickeya zeae |
| 107 | 4591026 | 4591259 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 108 | 3592516 | 3592785 | + | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 109 | 196899 | 197168 | - | NZ_CP023567.1 | Erwinia pyrifoliae |
| 110 | 1950830 | 1951057 | + | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 111 | 2429232 | 2429504 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 112 | 111872 | 112126 | - | NZ_LT615367.1 | Dickeya aquatica |
| 113 | 1887797 | 1888069 | - | NZ_CP007230.1 | Yersinia similis |
| 114 | 3649629 | 3649898 | + | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 115 | 258469 | 258705 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 116 | 2144035 | 2144307 | - | NZ_CP011254.1 | Serratia fonticola |
| 117 | 3588127 | 3588414 | + | NZ_LS483422.1 | Providencia heimbachae |
| 118 | 4494656 | 4494904 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 119 | 1475809 | 1476105 | - | NZ_CP029736.1 | Providencia rettgeri |
| 120 | 28107 | 28376 | - | NZ_CP015581.1 | Tatumella citrea |
| 121 | 4313859 | 4314131 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 122 | 3374032 | 3374310 | + | NZ_CP067057.1 | Rahnella aceris |
| 123 | 441616 | 441885 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 124 | 2560059 | 2560301 | + | NZ_CP049115.1 | Pantoea stewartii |
| 125 | 663634 | 663906 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 126 | 4334029 | 4334292 | + | NC_012962.1 | Photorhabdus asymbiotica |
| 127 | 246306 | 246578 | - | NZ_CP043727.1 | Yersinia canariae |
| 128 | 4794401 | 4794682 | + | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 129 | 3115237 | 3115533 | + | NZ_CP031123.2 | Providencia huaxiensis |
| 130 | 3140366 | 3140638 | - | NZ_CP009787.1 | Yersinia rohdei |
| 131 | 4428498 | 4428770 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 132 | 3737063 | 3737299 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 133 | 333988 | 334224 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 134 | 337979 | 338215 | - | NZ_CP038853.1 | Pantoea vagans |
| 135 | 253441 | 253713 | - | NZ_CP032487.1 | Yersinia hibernica |
| 136 | 347068 | 347310 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 137 | 1573003 | 1573287 | - | NZ_CP023536.1 | Providencia alcalifaciens |
| 138 | 928596 | 928868 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 139 | 3727172 | 3727459 | + | NZ_CP048796.1 | Providencia vermicola |
| 140 | 2960829 | 2961092 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 141 | 2884772 | 2885041 | + | NZ_CP060401.1 | Xenorhabdus nematophila |
| 142 | 3785048 | 3785329 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 143 | 3736283 | 3736552 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 144 | 458146 | 458448 | - | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 145 | 2054990 | 2055289 | - | NZ_CP026364.1 | Proteus hauseri |
| 146 | 2943110 | 2943391 | + | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 147 | 555009 | 555278 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 148 | 3941171 | 3941464 | - | NC_010554.1 | Proteus mirabilis HI4320 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR134340.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF04545.18 | 0.95 | 139 | 4327 | opposite-strand | Sigma-70, region 4 |
| 2 | PF04542.16 | 0.95 | 139 | 4327.0 | opposite-strand | Sigma-70 region 2 |
| 3 | PF18075.3 | 0.97 | 143 | 3034.5 | opposite-strand | FtsX extracellular domain |
| 4 | PF02687.23 | 0.94 | 138 | 3034 | opposite-strand | FtsX-like permease family |
| 5 | PF00005.29 | 0.99 | 145 | 2380.0 | opposite-strand | ABC transporter |
| 6 | PF00448.24 | 0.99 | 146 | 830 | opposite-strand | SRP54-type protein, GTPase domain |
| 7 | PF02881.21 | 0.99 | 146 | 830 | opposite-strand | SRP54-type protein, helical bundle domain |
| 8 | PF03602.17 | 1.0 | 147 | 7.0 | same-strand | Conserved hypothetical protein 95 |
| 9 | PF10694.11 | 0.73 | 108 | 22 | opposite-strand | Protein of unknown function (DUF2500) |
| 10 | PF07947.16 | 0.92 | 135 | 547.5 | same-strand | YhhN family |
| 11 | PF00122.22 | 0.77 | 113 | 1257.5 | same-strand | E1-E2 ATPase |
| 12 | PF00702.28 | 0.77 | 113 | 1257.5 | same-strand | haloacid dehalogenase-like hydrolase |
| 13 | PF00403.28 | 0.76 | 111 | 1257.5 | same-strand | Heavy-metal-associated domain |
| 14 | PF01206.19 | 0.69 | 101 | 3533.5 | opposite-strand | Sulfurtransferase TusA |
| 15 | PF13401.8 | 0.75 | 110 | 832.0 | opposite-strand | AAA domain |
++ More..