* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP058907.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00556.22
|
1.0
|
3
|
38
|
same-strand
|
Antenna complex alpha/beta subunit
|
2
|
PF00072.26
|
0.67
|
2
|
2831
|
opposite-strand
|
Response regulator receiver domain
|
3
|
PF00196.21
|
0.67
|
2
|
1813.5
|
opposite-strand
|
Bacterial regulatory proteins, luxR family
|
4
|
PF08281.14
|
0.67
|
2
|
1813.5
|
opposite-strand
|
Sigma-70, region 4
|
5
|
PF00360.22
|
0.67
|
2
|
1148.0
|
opposite-strand
|
Phytochrome region
|
6
|
PF01590.28
|
0.67
|
2
|
1148.0
|
opposite-strand
|
GAF domain
|
7
|
PF08446.13
|
0.67
|
2
|
1148.0
|
opposite-strand
|
PAS fold
|
8
|
PF07730.15
|
0.67
|
2
|
1148.0
|
opposite-strand
|
Histidine kinase
|
9
|
PF02518.28
|
0.67
|
2
|
1782
|
opposite-strand
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
|
10
|
PF03209.17
|
0.67
|
2
|
142.0
|
same-strand
|
PUCC protein
|
++ More..