Result : A5CQP8
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L32 |
| NCBI Accession ID | AM711867.1 |
| Organism | Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) |
| Left | 1536840 |
| Right | 1537043 |
| Strand | + |
| Nucleotide Sequence | ATGGCTGTTCCCAAGAGAAAGATGTCCCGATCCAACACGCGCGCCCGTCGCTCGCAGTGGAAGGCCGAGGCTCCCACGCTCGTCAAGACCATCGAGAACGGCAAGGTCGTCTACTCCATGCCCCACCGCGCCCGCGTGGTCGAGGACGCTGCCGGCACCCCCCTGTACATGGAGTACAAGGGCCGCAAGGTCGCCGACGTCTAG |
| Sequence | MAVPKRKMSRSNTRARRSQWKAEAPTLVKTIENGKVVYSMPHRARVVEDAAGTPLYMEYKGRKVADV |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl09115. Profile Description: Ribosomal L32p protein family. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus. [Protein synthesis, Ribosomal proteins: synthesis and modification] |
| Pubmed ID | 18192381 |
| Domain | CDD:415589 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | A5CQP8 |
| ORF Length (Amino Acid) | 67 |
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| Conservation Analysis |
No. of Species: 86
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1511273 | 1511476 | + | NZ_CP033724.1 | Clavibacter michiganensis subsp. michiganensis |
| 2 | 1975037 | 1975240 | - | NZ_CP058670.1 | Chryseoglobus indicus |
| 3 | 1925262 | 1925465 | + | NZ_CP013979.1 | Agromyces aureus |
| 4 | 1907188 | 1907391 | - | NZ_CP026949.1 | Mycetocola zhujimingii |
| 5 | 1902215 | 1902418 | - | NZ_CP028913.1 | Agromyces badenianii |
| 6 | 2355174 | 2355377 | + | NZ_CP035491.1 | Agromyces protaetiae |
| 7 | 3129435 | 3129638 | - | NZ_CP017146.1 | Marisediminicola antarctica |
| 8 | 2535216 | 2535419 | - | NZ_CP020715.1 | Cnuibacter physcomitrellae |
| 9 | 2751241 | 2751444 | - | NZ_CP025333.1 | Brevibacterium aurantiacum |
| 10 | 2579558 | 2579761 | - | NZ_CP026734.1 | Brevibacterium linens |
| 11 | 947569 | 947772 | + | NC_022438.1 | Leifsonia xyli subsp. cynodontis DSM 46306 |
| 12 | 3414677 | 3414880 | - | NZ_CP065682.1 | Brevibacterium casei |
| 13 | 164290 | 164493 | + | NZ_CP035810.1 | Brevibacterium luteolum |
| 14 | 1181819 | 1182022 | - | NZ_CP028130.1 | Rathayibacter iranicus |
| 15 | 471951 | 472154 | - | NZ_CP049863.1 | Leucobacter viscericola |
| 16 | 3344162 | 3344365 | - | NZ_CP029642.1 | Arthrobacter dokdonellae |
| 17 | 1743965 | 1744168 | - | NZ_CP049933.1 | Leucobacter coleopterorum |
| 18 | 2216072 | 2216275 | - | NZ_CP013745.1 | Arthrobacter alpinus |
| 19 | 1449444 | 1449647 | - | NZ_CP028129.1 | Rathayibacter rathayi |
| 20 | 1751233 | 1751436 | - | NZ_CP015515.1 | Rathayibacter tritici |
| 21 | 366350 | 366553 | + | NZ_CP018135.1 | Neomicrococcus aestuarii |
| 22 | 2350264 | 2350467 | - | NZ_CP071883.1 | Curtobacterium flaccumfaciens pv. flaccumfaciens |
| 23 | 4378204 | 4378386 | - | NZ_CP018863.1 | Arthrobacter crystallopoietes |
| 24 | 356379 | 356582 | + | NZ_CP042260.1 | Glutamicibacter halophytocola |
| 25 | 1812910 | 1813116 | - | NZ_CP047186.1 | Rathayibacter tanaceti |
| 26 | 3409256 | 3409459 | + | NZ_CP035806.1 | Leucobacter triazinivorans |
| 27 | 1622445 | 1622648 | + | NZ_CP033081.1 | Glutamicibacter nicotianae |
| 28 | 1674902 | 1675105 | + | NC_014550.1 | Glutamicibacter arilaitensis Re117 |
| 29 | 270372 | 270575 | + | NZ_CP060716.1 | Leucobacter denitrificans |
| 30 | 2525343 | 2525546 | - | NZ_CP047180.1 | Rathayibacter festucae |
| 31 | 1425851 | 1426033 | + | NZ_CP034412.1 | Glutamicibacter creatinolyticus |
| 32 | 1833835 | 1834038 | - | NZ_LR131272.1 | Arthrobacter agilis |
| 33 | 1361146 | 1361349 | - | NZ_CP011005.1 | Psychromicrobium lacuslunae |
| 34 | 226248 | 226454 | + | NZ_AP017457.1 | Aurantimicrobium minutum |
| 35 | 2762670 | 2762873 | - | NZ_CP013254.1 | Kocuria flava |
| 36 | 1165475 | 1165678 | + | NZ_CP035504.1 | Kocuria indica |
| 37 | 1658221 | 1658430 | - | NZ_CP038256.1 | Microbacterium sediminis |
| 38 | 1548290 | 1548493 | - | NZ_LR134479.1 | Rothia aeria |
| 39 | 1566095 | 1566304 | - | NZ_CP031421.1 | Microbacterium oleivorans |
| 40 | 2131846 | 2132049 | + | NZ_CP032630.1 | Protaetiibacter intestinalis |
| 41 | 1467104 | 1467307 | + | NZ_CP035037.1 | Leucobacter muris |
| 42 | 2153873 | 2154082 | - | NZ_CP038266.1 | Microbacterium wangchenii |
| 43 | 2912638 | 2912847 | + | NZ_CP061344.1 | Microbacterium hominis |
| 44 | 1542243 | 1542446 | - | NC_010168.1 | Renibacterium salmoninarum ATCC 33209 |
| 45 | 2112018 | 2112227 | - | NZ_CP044232.1 | Microbacterium lushaniae |
| 46 | 959538 | 959741 | + | NC_012803.1 | Micrococcus luteus NCTC 2665 |
| 47 | 2395524 | 2395727 | - | NC_014643.1 | Rothia dentocariosa ATCC 17931 |
| 48 | 2688489 | 2688692 | - | NZ_CP068013.1 | Paenarthrobacter ureafaciens |
| 49 | 3194760 | 3194969 | + | NZ_CP035494.1 | Microbacterium protaetiae |
| 50 | 1930018 | 1930227 | - | NZ_CP064760.1 | Microbacterium schleiferi |
| 51 | 546792 | 546995 | + | NZ_CP026923.1 | Pontimonas salivibrio |
| 52 | 1021448 | 1021651 | + | NZ_CP012507.1 | Kocuria palustris |
| 53 | 1767255 | 1767464 | + | NZ_CP018762.1 | Microbacterium aurum |
| 54 | 1076416 | 1076619 | + | NZ_CP061538.1 | Rothia amarae |
| 55 | 1015209 | 1015412 | + | NZ_CP056080.1 | Rothia nasimurium |
| 56 | 1086631 | 1086834 | + | NZ_CP061539.1 | Rothia terrae |
| 57 | 915574 | 915777 | - | NZ_CP040508.1 | Rhodoluna limnophila |
| 58 | 927423 | 927626 | - | NZ_CP007490.1 | Rhodoluna lacicola |
| 59 | 1775346 | 1775555 | - | NZ_CP031423.1 | Microbacterium lemovicicum |
| 60 | 2395047 | 2395250 | - | NZ_CP016282.1 | Cryobacterium arcticum |
| 61 | 4307381 | 4307584 | + | NZ_CP030033.1 | Cryobacterium soli |
| 62 | 2076188 | 2076397 | - | NZ_CP031422.1 | Microbacterium oxydans |
| 63 | 1412308 | 1412517 | + | NZ_CP044231.1 | Microbacterium caowuchunii |
| 64 | 2721548 | 2721757 | + | NZ_CP049255.1 | Microbacterium endophyticum |
| 65 | 1627200 | 1627409 | + | NZ_CP031425.1 | Microbacterium foliorum |
| 66 | 91723 | 91926 | - | NZ_CP032624.1 | Gryllotalpicola protaetiae |
| 67 | 140096 | 140305 | + | NZ_CP049253.1 | Microbacterium amylolyticum |
| 68 | 655897 | 656094 | - | NC_004572.3 | Tropheryma whipplei str. Twist |
| 69 | 851546 | 851749 | - | NC_009664.2 | Kineococcus radiotolerans SRS30216 = ATCC BAA-149 |
| 70 | 4964500 | 4964682 | - | NZ_CP015235.1 | Rhodococcus fascians D188 |
| 71 | 3745175 | 3745357 | - | NZ_CP045929.1 | Saccharopolyspora coralli |
| 72 | 2131949 | 2132131 | - | NZ_CP061007.1 | Saccharopolyspora spinosa |
| 73 | 7924476 | 7924658 | + | NZ_CP031142.1 | Saccharopolyspora pogona |
| 74 | 1595172 | 1595342 | - | NZ_CP040635.1 | Acidipropionibacterium jensenii |
| 75 | 3895147 | 3895344 | - | NZ_CP041146.1 | Nocardioides humi |
| 76 | 4854969 | 4855151 | - | NZ_CP018082.1 | Nocardia mangyaensis |
| 77 | 1850829 | 1851029 | + | NC_012669.1 | Beutenbergia cavernae DSM 12333 |
| 78 | 2510308 | 2510490 | + | NZ_AP023172.1 | Rhodococcus qingshengii |
| 79 | 4623338 | 4623517 | - | NC_014391.1 | Micromonospora aurantiaca ATCC 27029 |
| 80 | 3445807 | 3445986 | - | NC_009380.1 | Salinispora tropica CNB-440 |
| 81 | 8860251 | 8860433 | + | NZ_CP022088.2 | Nocardia brasiliensis |
| 82 | 5735468 | 5735650 | - | NZ_LR134352.1 | Nocardia asteroides |
| 83 | 2183478 | 2183672 | - | NZ_CP044427.1 | Ornithinimicrobium pratense |
| 84 | 2519797 | 2519979 | - | NZ_CP048813.1 | Rhodococcus triatomae |
| 85 | 3645077 | 3645259 | + | NZ_CP026746.1 | Nocardia cyriacigeorgica |
| 86 | 4333614 | 4333796 | - | NC_006361.1 | Nocardia farcinica IFM 10152 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP033724.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01467.28 | 0.79 | 68 | 739.5 | same-strand | Cytidylyltransferase-like |
| 2 | PF02620.19 | 0.86 | 74 | 3.0 | same-strand | Large ribosomal RNA subunit accumulation protein YceD |
| 3 | PF14622.8 | 0.95 | 82 | 18.5 | same-strand | Ribonuclease-III-like |
| 4 | PF00636.28 | 0.95 | 82 | 18.5 | same-strand | Ribonuclease III domain |
| 5 | PF00035.28 | 0.95 | 82 | 18.5 | same-strand | Double-stranded RNA binding motif |
| 6 | PF01149.26 | 0.92 | 79 | 743.5 | same-strand | Formamidopyrimidine-DNA glycosylase N-terminal domain |
| 7 | PF06831.16 | 0.94 | 81 | 744.0 | same-strand | Formamidopyrimidine-DNA glycosylase H2TH domain |
| 8 | PF06827.16 | 0.72 | 62 | 749.5 | same-strand | Zinc finger found in FPG and IleRS |
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