Result : P32700
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YjcB |
| NCBI Accession ID | U00096.3 |
| Organism | Escherichia coli (strain K12) |
| Left | 4274760 |
| Right | 4275041 |
| Strand | - |
| Nucleotide Sequence | ATGGCTACCCTCACCACTGGCGTGGTTCTTCTTCGCTGGCAACTTCTTAGTGCCGTAATGATGTTTCTGGCCAGCACACTCAACATCCGTTTTCGTCGGTCTGATTATGTCGGGCTTGCGGTGATCAGCAGCGGTCTGGGCGTTGTTTCCGCCTGTTGGTTCGCAATGGGGTTGCTTGGCATCACAATGGCGGACATCACCGCTATCTGGCACAACATCGAGTCGGTGATGATAGAAGAGATGAATCAGACACCGCCACAATGGCCAATGATTTTGACCTGA |
| Sequence | MATLTTGVVLLRWQLLSAVMMFLASTLNIRFRRSDYVGLAVISSGLGVVSACWFAMGLLGITMADITAIWHNIESVMIEEMNQTPPQWPMILT |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of pfam15940. Profile Description: Family of unknown function. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. |
| Pubmed ID | 8265357 9278503 16738553 |
| Domain | CDD:406379 |
| Functional Category | Others |
| Uniprot ID | P32700 |
| ORF Length (Amino Acid) | 93 |
++ More..
| Conservation Analysis |
No. of Species: 60
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 4274760 | 4275041 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 2 | 5128034 | 5128315 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 3 | 3765584 | 3765865 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 4 | 4304626 | 4304907 | - | NZ_AP014857.1 | Escherichia albertii |
| 5 | 3253521 | 3253802 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 6 | 315281 | 315562 | - | NZ_LR134340.1 | Escherichia marmotae |
| 7 | 933270 | 933551 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 8 | 4501553 | 4501834 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 9 | 738908 | 739189 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 10 | 2250930 | 2251211 | - | NZ_CP053416.1 | Salmonella bongori |
| 11 | 3557599 | 3557880 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 12 | 3633620 | 3633901 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 13 | 3050975 | 3051256 | + | NZ_CP038469.1 | Citrobacter tructae |
| 14 | 2017466 | 2017747 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 15 | 3064115 | 3064396 | - | NZ_CP033744.1 | Citrobacter freundii |
| 16 | 4197715 | 4197996 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 17 | 80284 | 80565 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 18 | 2798969 | 2799250 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 19 | 312040 | 312321 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 20 | 36385 | 36666 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 21 | 5028376 | 5028657 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 22 | 2856107 | 2856388 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 23 | 334838 | 335119 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 24 | 338765 | 339046 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 25 | 3801769 | 3802050 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 26 | 321226 | 321507 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 27 | 365602 | 365883 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 28 | 4079498 | 4079779 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 29 | 3518025 | 3518306 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 30 | 2097838 | 2098119 | - | NZ_CP026047.1 | Raoultella planticola |
| 31 | 5212136 | 5212417 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 32 | 347819 | 348100 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 33 | 4501771 | 4502052 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 34 | 2263999 | 2264280 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 35 | 336252 | 336533 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 36 | 4846709 | 4846990 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 37 | 3186948 | 3187229 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 38 | 339872 | 340153 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 39 | 325953 | 326234 | - | NC_015968.1 | Enterobacter soli |
| 40 | 5161875 | 5162156 | + | NZ_CP054254.1 | Klebsiella variicola |
| 41 | 4877228 | 4877509 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 42 | 5226766 | 5227047 | + | NZ_CP050508.1 | Raoultella terrigena |
| 43 | 5779274 | 5779555 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 44 | 5718015 | 5718296 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 45 | 4923277 | 4923558 | + | NZ_CP041247.1 | Raoultella electrica |
| 46 | 1316335 | 1316616 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 47 | 319079 | 319357 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 48 | 3890054 | 3890332 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 49 | 172180 | 172458 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 50 | 3960810 | 3961088 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 51 | 4316074 | 4316355 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 52 | 3793806 | 3794084 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 53 | 3869930 | 3870208 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 54 | 4234322 | 4234609 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 55 | 4711611 | 4711892 | + | NZ_CP023525.1 | Cedecea neteri |
| 56 | 1596278 | 1596556 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 57 | 4329049 | 4329330 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 58 | 1343266 | 1343544 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 59 | 4275203 | 4275484 | + | NZ_LR134201.1 | Cedecea lapagei |
| 60 | 4184727 | 4185008 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 61 | 3767688 | 3767936 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP045205.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00563.22 | 0.88 | 53 | 586.5 | opposite-strand | EAL domain |
| 2 | PF12792.9 | 0.88 | 53 | 586.5 | opposite-strand | CSS motif domain associated with EAL |
| 3 | PF12833.9 | 1.0 | 60 | 2178 | same-strand | Helix-turn-helix domain |
| 4 | PF00165.25 | 1.0 | 60 | 2178 | same-strand | Bacterial regulatory helix-turn-helix proteins, AraC family |
| 5 | PF09278.13 | 1.0 | 60 | 2588 | opposite-strand | MerR, DNA binding |
| 6 | PF00376.25 | 1.0 | 60 | 2588 | opposite-strand | MerR family regulatory protein |
| 7 | PF13411.8 | 1.0 | 60 | 2588 | opposite-strand | MerR HTH family regulatory protein |
| 8 | PF00860.22 | 0.67 | 40 | 4112 | opposite-strand | Permease family |
| 9 | PF02798.22 | 0.7 | 42 | 3314.0 | opposite-strand | Glutathione S-transferase, N-terminal domain |
| 10 | PF13417.8 | 0.7 | 42 | 3314.0 | opposite-strand | Glutathione S-transferase, N-terminal domain |
| 11 | PF13409.8 | 0.7 | 42 | 3314.0 | opposite-strand | Glutathione S-transferase, N-terminal domain |
++ More..