* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01219.21
|
1.0
|
3
|
3316
|
same-strand
|
Prokaryotic diacylglycerol kinase
|
2
|
PF00717.25
|
1.0
|
3
|
2598
|
same-strand
|
Peptidase S24-like
|
3
|
PF01726.18
|
1.0
|
3
|
2598
|
same-strand
|
LexA DNA binding domain
|
4
|
PF01554.20
|
1.0
|
3
|
1200
|
same-strand
|
MatE
|
5
|
PF05532.14
|
1.0
|
3
|
875
|
same-strand
|
CsbD-like
|
6
|
PF01475.21
|
1.0
|
3
|
318
|
opposite-strand
|
Ferric uptake regulator family
|
7
|
PF10897.10
|
0.67
|
2
|
24.0
|
same-strand
|
Protein of unknown function (DUF2713)
|
8
|
PF01207.19
|
1.0
|
3
|
1094
|
same-strand
|
Dihydrouridine synthase (Dus)
|
9
|
PF09583.12
|
1.0
|
3
|
2265
|
same-strand
|
Phage shock protein G (Phageshock PspG)
|
10
|
PF00107.28
|
1.0
|
3
|
2673
|
opposite-strand
|
Zinc-binding dehydrogenase
|
11
|
PF13602.8
|
1.0
|
3
|
2673
|
opposite-strand
|
Zinc-binding dehydrogenase
|
12
|
PF03796.17
|
0.67
|
2
|
3739.0
|
same-strand
|
DnaB-like helicase C terminal domain
|
13
|
PF00772.23
|
0.67
|
2
|
3739.0
|
same-strand
|
DnaB-like helicase N terminal domain
|
14
|
PF13481.8
|
0.67
|
2
|
3739.0
|
same-strand
|
AAA domain
|
++ More..