Result : P32685
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YjbD |
| NCBI Accession ID | U00006.1 |
| Organism | Escherichia coli (strain K12) |
| Left | 96601 |
| Right | 96873 |
| Strand | - |
| Nucleotide Sequence | ATGGCACTCCCCCGTATTACCCAAAAAGAGATGACTGAACGCGAGCAGCGTGAACTTAAAACACTGCTGGATCGGGCGCGGATTGCGCATGGTCGCGTATTGACCAACTCCGAAACCAACAGCATTAAGAAAGATTACATCGATAAATTAATGGTTGAGCGTGAGGCTGAAGCGAAAAAAGCCCGCCAGTTGAAGAAAAAGCAGGCTTATAAACCGGATCCTGAAGCGTCATTTAGCTGGTCAGCAAATACGTCGACGCGCGGCAGGCGCTAA |
| Sequence | MALPRITQKEMTEREQRELKTLLDRARIAHGRVLTNSETNSIKKDYIDKLMVEREAEAKKARQLKKKQAYKPDPEASFSWSANTSTRGRR |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl08125. Profile Description: YjbD family (DUF3811). hypothetical protein; Provisional |
| Pubmed ID | 8265357 9278503 16738553 |
| Domain | CDD:415467 |
| Functional Category | Others |
| Uniprot ID | P32685 |
| ORF Length (Amino Acid) | 90 |
++ More..
| Conservation Analysis |
No. of Species: 85
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 4231359 | 4231631 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 2 | 3947418 | 3947690 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 3 | 3178515 | 3178787 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 4 | 4208264 | 4208536 | - | NZ_AP014857.1 | Escherichia albertii |
| 5 | 5084746 | 5085018 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 6 | 268837 | 269109 | - | NZ_LR134340.1 | Escherichia marmotae |
| 7 | 125789 | 126061 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 8 | 3101227 | 3101499 | + | NZ_CP038469.1 | Citrobacter tructae |
| 9 | 3911179 | 3911451 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 10 | 4242716 | 4242988 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 11 | 4374260 | 4374532 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 12 | 792193 | 792465 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 13 | 879262 | 879534 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 14 | 3010570 | 3010842 | - | NZ_CP033744.1 | Citrobacter freundii |
| 15 | 2062399 | 2062671 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 16 | 2183221 | 2183493 | - | NZ_CP053416.1 | Salmonella bongori |
| 17 | 1552167 | 1552439 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 18 | 5831656 | 5831928 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 19 | 5773775 | 5774047 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 20 | 5265597 | 5265869 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 21 | 5288238 | 5288510 | + | NZ_CP050508.1 | Raoultella terrigena |
| 22 | 4934228 | 4934500 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 23 | 270619 | 270891 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 24 | 5217763 | 5218035 | + | NZ_CP054254.1 | Klebsiella variicola |
| 25 | 283833 | 284105 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 26 | 4416358 | 4416630 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 27 | 4893055 | 4893327 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 28 | 3625891 | 3626163 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 29 | 2339835 | 2340107 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 30 | 262552 | 262824 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 31 | 2044904 | 2045176 | - | NZ_CP026047.1 | Raoultella planticola |
| 32 | 2760841 | 2761113 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 33 | 277465 | 277737 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 34 | 276625 | 276897 | - | NC_015968.1 | Enterobacter soli |
| 35 | 3275069 | 3275341 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 36 | 4038067 | 4038339 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 37 | 4968703 | 4968975 | + | NZ_CP041247.1 | Raoultella electrica |
| 38 | 280726 | 280998 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 39 | 3436263 | 3436535 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 40 | 5097422 | 5097694 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 41 | 1223467 | 1223739 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 42 | 4542510 | 4542782 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 43 | 2855648 | 2855920 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 44 | 4375394 | 4375666 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 45 | 5628307 | 5628579 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 46 | 3811459 | 3811737 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 47 | 4277337 | 4277609 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 48 | 1383638 | 1383910 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 49 | 3839518 | 3839790 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 50 | 265905 | 266177 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 51 | 248414 | 248686 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 52 | 3925622 | 3925894 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 53 | 4334821 | 4335093 | + | NZ_LR134201.1 | Cedecea lapagei |
| 54 | 4760258 | 4760530 | + | NZ_CP023525.1 | Cedecea neteri |
| 55 | 4015813 | 4016085 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 56 | 119566 | 119838 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 57 | 3847012 | 3847284 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 58 | 3762568 | 3762840 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 59 | 4217519 | 4217791 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 60 | 1729644 | 1729886 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 61 | 2413732 | 2413974 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 62 | 2555231 | 2555473 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 63 | 4211879 | 4212121 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 64 | 1536438 | 1536680 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 65 | 3016024 | 3016266 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 66 | 2272297 | 2272542 | - | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 67 | 2492596 | 2492838 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 68 | 1793512 | 1793778 | - | NZ_CP065534.1 | Lonsdalea populi |
| 69 | 1889045 | 1889311 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 70 | 5373308 | 5373550 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 71 | 4021048 | 4021290 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 72 | 1257084 | 1257350 | - | NZ_CP067057.1 | Rahnella aceris |
| 73 | 1234387 | 1234629 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 74 | 2374318 | 2374560 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 75 | 2465528 | 2465770 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 76 | 2273923 | 2274195 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 77 | 2393336 | 2393599 | + | NZ_CP046293.1 | Yersinia intermedia |
| 78 | 3766933 | 3767196 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 79 | 1971006 | 1971269 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 80 | 4274315 | 4274578 | + | NZ_CP007230.1 | Yersinia similis |
| 81 | 3619121 | 3619384 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 82 | 322518 | 322781 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 83 | 2211278 | 2211541 | - | NZ_CP043727.1 | Yersinia canariae |
| 84 | 2446499 | 2446762 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 85 | 4575794 | 4576057 | - | NZ_CP011254.1 | Serratia fonticola |
| 86 | 2407592 | 2407855 | - | NZ_LT906479.1 | Serratia ficaria |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00849.24 | 0.6 | 51 | 1.0 | opposite-strand | RNA pseudouridylate synthase |
| 2 | PF01479.27 | 0.72 | 61 | 1.0 | opposite-strand | S4 domain |
++ More..