Result : P31912
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Rubredoxin (Rd) |
| NCBI Accession ID | M96433.1 |
| Organism | Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337) (Ralstonia eutropha) |
| Left | 7028 |
| Right | 7264 |
| Strand | + |
| Nucleotide Sequence | ATGAACGACGCAGGTATGGGGCGCTTCGAAGGCAGTTACCTGGGAGATCGGGGGCGCCTGGCGGCCGACGCGCGGCTGGAATGCAAGATCTGCTGGTGGGAGTACGATCCTGAAGTCGGCGATCCAGTTTGGCAGATTGCGCCCGGCACTTCATTTTCGGCGCTCCCGGCGCACTGGCGGTGTCCGAATTGCGACGGTGAAGCCGAGCAATTTATGGTGCTCGGTCCGCAGGCGTGA |
| Sequence | MNDAGMGRFEGSYLGDRGRLAADARLECKICWWEYDPEVGDPVWQIAPGTSFSALPAHWRCPNCDGEAEQFMVLGPQA |
| Source of smORF | Swiss-Prot |
| Function | Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule. Could be involved in hydrogenase-linked redox processes. |
| Pubmed ID | 1383192 12948488 |
| Domain | CDD:412217 |
| Functional Category | Metal-binding |
| Uniprot ID | P31912 |
| ORF Length (Amino Acid) | 78 |
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| Conservation Analysis |
No. of Species: 42
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 6596 | 6832 | + | NZ_CP039289.1 | Cupriavidus necator H16 |
| 2 | 678247 | 678486 | + | NZ_CP029210.1 | Aquabacterium olei |
| 3 | 2328047 | 2328295 | + | NZ_CP035708.1 | Sphaerotilus natans subsp. sulfidivorans |
| 4 | 233774 | 234001 | + | NZ_CP064338.1 | Schlegelella thermodepolymerans |
| 5 | 3001737 | 3001973 | - | NC_008825.1 | Methylibium petroleiphilum PM1 |
| 6 | 2089145 | 2089387 | - | NC_008781.1 | Polaromonas naphthalenivorans CJ2 |
| 7 | 1930610 | 1930840 | + | NZ_CP022423.1 | Vitreoscilla filiformis |
| 8 | 5119292 | 5119510 | - | NC_012560.1 | Azotobacter vinelandii DJ |
| 9 | 1566211 | 1566429 | - | NZ_CP049135.1 | Paraburkholderia tropica |
| 10 | 445402 | 445629 | + | NZ_CP022992.1 | Paraburkholderia aromaticivorans |
| 11 | 3187100 | 3187330 | + | NZ_CP018420.1 | Pseudomonas veronii |
| 12 | 4374419 | 4374637 | - | NZ_CP011835.1 | Azotobacter chroococcum |
| 13 | 3867954 | 3868178 | + | NZ_CP039731.1 | Aquitalea aquatilis |
| 14 | 1514121 | 1514345 | - | NZ_CP047241.1 | Aquitalea denitrificans |
| 15 | 1000107 | 1000337 | - | NZ_CP017415.1 | Acidihalobacter yilgarnenesis |
| 16 | 2902091 | 2902309 | + | NZ_CP045302.1 | Azotobacter salinestris |
| 17 | 291886 | 292116 | + | NZ_CP037867.1 | Hydrogenophaga pseudoflava |
| 18 | 880671 | 880871 | + | NZ_AP020335.1 | Hydrogenovibrio marinus |
| 19 | 4284469 | 4284696 | - | NZ_CP017476.1 | Hydrogenophaga crassostreae |
| 20 | 2329741 | 2329959 | - | NZ_CP043869.1 | Neptunomonas concharum |
| 21 | 1835771 | 1835986 | - | NZ_AP021884.1 | Sulfuriferula plumbiphila |
| 22 | 2295180 | 2295377 | - | NC_008340.1 | Alkalilimnicola ehrlichii MLHE-1 |
| 23 | 3673474 | 3673692 | + | NZ_CP011412.1 | Sedimenticola thiotaurini |
| 24 | 231301 | 231510 | - | NZ_CP029331.1 | Thauera hydrothermalis |
| 25 | 1427614 | 1427835 | - | NZ_CP014476.1 | Methylomonas denitrificans |
| 26 | 4242613 | 4242825 | + | NZ_CP016210.1 | Azoarcus olearius |
| 27 | 435418 | 435642 | + | NZ_CP054836.1 | Oricola thermophila |
| 28 | 2769175 | 2769396 | + | NZ_CP043929.1 | Methylomonas rhizoryzae |
| 29 | 1939801 | 1940022 | - | NC_015572.1 | Methylomonas methanica MC09 |
| 30 | 471816 | 472040 | + | NZ_CP022111.1 | Nitrospirillum amazonense CBAmc |
| 31 | 1191444 | 1191641 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 32 | 525497 | 525712 | + | NZ_CP050299.1 | Mesorhizobium huakuii |
| 33 | 1079146 | 1079337 | + | NC_014664.1 | Rhodomicrobium vannielii ATCC 17100 |
| 34 | 2757330 | 2757521 | - | NZ_CP019948.1 | Methylocystis bryophila |
| 35 | 55804 | 56013 | + | NZ_CP022220.1 | Bradyrhizobium guangxiense |
| 36 | 827432 | 827641 | + | NZ_CP030054.1 | Bradyrhizobium guangzhouense |
| 37 | 647839 | 648048 | + | NZ_CP030052.1 | Bradyrhizobium guangdongense |
| 38 | 72106 | 72321 | - | NZ_CP006879.1 | Rhizobium gallicum bv. gallicum R602sp |
| 39 | 6627400 | 6627612 | - | NC_020453.1 | Bradyrhizobium oligotrophicum S58 |
| 40 | 5785205 | 5785420 | - | NZ_CP016428.1 | Bradyrhizobium icense |
| 41 | 2329843 | 2330052 | + | NZ_CP022219.1 | Bradyrhizobium guangxiense |
| 42 | 7567670 | 7567879 | - | NZ_CP032617.1 | Bradyrhizobium diazoefficiens |
| 43 | 1489502 | 1489714 | - | NZ_AP018558.1 | Hydrogenophilus thermoluteolus |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP039289.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01750.20 | 0.9 | 38 | 1685 | same-strand | Hydrogenase maturation protease |
| 2 | PF01455.20 | 0.88 | 37 | 1386 | same-strand | HupF/HypC family |
| 3 | PF07449.13 | 0.95 | 40 | 875 | same-strand | Hydrogenase-1 expression protein HyaE |
| 4 | PF04809.15 | 1.0 | 42 | -3 | same-strand | HupH hydrogenase expression protein, C-terminal conserved region |
| 5 | PF11939.10 | 0.98 | 41 | -3.0 | same-strand | [NiFe]-hydrogenase assembly, chaperone, HybE |
| 6 | PF01155.21 | 0.95 | 40 | 1616 | same-strand | Hydrogenase/urease nickel incorporation, metallochaperone, hypA |
| 7 | PF02492.21 | 0.95 | 40 | 2004 | same-strand | CobW/HypB/UreG, nucleotide-binding domain |
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