* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP023202.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF07992.16
|
1.0
|
2
|
1694.5
|
both-strands
|
Pyridine nucleotide-disulphide oxidoreductase
|
2
|
PF02852.24
|
1.0
|
2
|
1694.5
|
both-strands
|
Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
|
3
|
PF00070.29
|
1.0
|
2
|
1694.5
|
both-strands
|
Pyridine nucleotide-disulphide oxidoreductase
|
4
|
PF07884.16
|
1.0
|
2
|
1732.5
|
same-strand
|
Vitamin K epoxide reductase family
|
5
|
PF02683.17
|
1.0
|
2
|
692.5
|
same-strand
|
Cytochrome C biogenesis protein transmembrane region
|
6
|
PF11139.10
|
1.0
|
2
|
692.5
|
same-strand
|
Sap, sulfolipid-1-addressing protein
|
7
|
PF13905.8
|
1.0
|
2
|
125.0
|
same-strand
|
Thioredoxin-like
|
8
|
PF00578.23
|
1.0
|
2
|
125.0
|
same-strand
|
AhpC/TSA family
|
9
|
PF01022.22
|
1.0
|
2
|
-3.0
|
same-strand
|
Bacterial regulatory protein, arsR family
|
10
|
PF12840.9
|
1.0
|
2
|
-3.0
|
same-strand
|
Helix-turn-helix domain
|
11
|
PF12802.9
|
1.0
|
2
|
-3.0
|
same-strand
|
MarR family
|
12
|
PF12324.10
|
1.0
|
2
|
1961.0
|
opposite-strand
|
Helix-turn-helix domain of alkylmercury lyase
|
++ More..