Result : P29943
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein in cobS 5'region (ORF1) |
| NCBI Accession ID | M62869.1 |
| Organism | Sinorhizobium sp. |
| Left | 379 |
| Right | 660 |
| Strand | - |
| Nucleotide Sequence | ATGTCGCTCACCGAGACCATCGAAAAGAAGCTGATCGAGGCCTTCCACCCTGAACGGCTCGAGGTCATCAACGAGAGCCATCAGCATACCGGCCATCAGCCGGGCTTCGATGGTACCGGCGAGTCCCACATGCGGGTGCGTATCGTTTCTAGCGCCTTTGCCGGCATGAGCCGTGTCGCCCGCCACCGCGCCATCAATGATCTCCTGAAGCCAGAACTCGACGCCGGCCTGCATGCGCTCGCCGTCGAGCCGGCAGCCCCCGGCGAGCCGACCCGCTGGTAG |
| Sequence | MSLTETIEKKLIEAFHPERLEVINESHQHTGHQPGFDGTGESHMRVRIVSSAFAGMSRVARHRAINDLLKPELDAGLHALAVEPAAPGEPTRW |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00386. Profile Description: BolA-like protein. transcriptional regulator BolA; Provisional |
| Pubmed ID | 1917840 |
| Domain | CDD:412350 |
| Functional Category | Others |
| Uniprot ID | P29943 |
| ORF Length (Amino Acid) | 93 |
++ More..
| Conservation Analysis |
No. of Species: 147
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2916370 | 2916651 | + | NZ_CP015880.1 | Ensifer adhaerens |
| 2 | 2621835 | 2622116 | + | NZ_CP034909.1 | Ensifer alkalisoli |
| 3 | 2617395 | 2617676 | + | NZ_CP023067.1 | Ensifer sojae CCBAU 05684 |
| 4 | 2978707 | 2978988 | + | NZ_CP029451.1 | Sinorhizobium fredii CCBAU 25509 |
| 5 | 3576543 | 3576824 | + | NZ_CP041238.1 | Ensifer mexicanus |
| 6 | 2881255 | 2881536 | + | NC_020528.1 | Sinorhizobium meliloti 2011 |
| 7 | 3047125 | 3047406 | + | NZ_CP013107.1 | Sinorhizobium americanum |
| 8 | 376967 | 377248 | - | NZ_CP054027.1 | Rhizobium hidalgonense |
| 9 | 1466441 | 1466722 | + | NZ_CP071454.1 | Rhizobium lentis |
| 10 | 4603662 | 4603943 | + | NZ_CP071678.1 | Rhizobium ruizarguesonis |
| 11 | 4028839 | 4029120 | + | NZ_CP071612.1 | Rhizobium bangladeshense |
| 12 | 4138530 | 4138811 | + | NZ_CP013500.1 | Rhizobium esperanzae |
| 13 | 3787552 | 3787833 | + | NZ_CP034998.1 | Rhizobium acidisoli |
| 14 | 4152392 | 4152673 | + | NZ_CP071604.1 | Rhizobium binae |
| 15 | 4111963 | 4112244 | + | NZ_CP013532.1 | Rhizobium phaseoli |
| 16 | 3124354 | 3124635 | - | NZ_CP054021.1 | Rhizobium indicum |
| 17 | 3962798 | 3963079 | + | NZ_CP020906.1 | Rhizobium etli |
| 18 | 162316 | 162597 | - | NZ_CP059896.1 | Ciceribacter thiooxidans |
| 19 | 3362075 | 3362356 | + | NZ_FO082820.1 | Pseudorhizobium banfieldiae |
| 20 | 3348095 | 3348376 | + | NZ_LR723670.1 | Pseudorhizobium flavum |
| 21 | 3796569 | 3796850 | + | NZ_CP006877.1 | Rhizobium gallicum bv. gallicum R602sp |
| 22 | 3986635 | 3986922 | + | NZ_CP032694.1 | Rhizobium jaguaris |
| 23 | 3332646 | 3332933 | + | NC_020059.1 | Rhizobium tropici CIAT 899 |
| 24 | 3673339 | 3673620 | + | NZ_HG938353.1 | Neorhizobium galegae bv. orientalis str. HAMBI 540 |
| 25 | 4332936 | 4333214 | + | NZ_CP032509.1 | Georhizobium profundi |
| 26 | 1395295 | 1395576 | - | NZ_CP049250.1 | Rhizobium rhizoryzae |
| 27 | 752895 | 753176 | + | NZ_CP061004.1 | Agrobacterium tumefaciens |
| 28 | 698984 | 699265 | + | NZ_CP048635.1 | Rhizobium oryzihabitans |
| 29 | 694562 | 694843 | + | NZ_CP053857.1 | Rhizobium pusense |
| 30 | 1178026 | 1178307 | + | NZ_CP049241.1 | Rhizobium pseudoryzae |
| 31 | 1623439 | 1623741 | - | NC_019973.1 | Mesorhizobium australicum WSM2073 |
| 32 | 4769659 | 4769961 | + | NZ_CP018171.1 | Mesorhizobium oceanicum |
| 33 | 2385381 | 2385665 | + | NZ_CP022604.1 | [Ochrobactrum] quorumnocens |
| 34 | 112106 | 112360 | - | NZ_CP036532.1 | Roseitalea porphyridii |
| 35 | 1577014 | 1577316 | - | NZ_CP033507.1 | Mesorhizobium jarvisii |
| 36 | 1593233 | 1593535 | - | NZ_CP033361.1 | Mesorhizobium erdmanii |
| 37 | 2874428 | 2874730 | + | NC_002678.2 | Mesorhizobium japonicum MAFF 303099 |
| 38 | 2544417 | 2544701 | + | NZ_CP064063.1 | Brucella anthropi |
| 39 | 2105024 | 2105326 | + | NZ_CP050296.1 | Mesorhizobium huakuii |
| 40 | 1961037 | 1961321 | + | NC_013119.1 | Brucella microti CCM 4915 |
| 41 | 5500345 | 5500647 | + | NZ_CP015064.1 | Mesorhizobium ciceri biovar biserrulae |
| 42 | 419426 | 419728 | - | NZ_CP017940.1 | Phyllobacterium zundukense |
| 43 | 1617223 | 1617525 | - | NC_015675.1 | Mesorhizobium opportunistum WSM2075 |
| 44 | 168193 | 168495 | + | NZ_CP015318.1 | Mesorhizobium amorphae CCNWGS0123 |
| 45 | 3677515 | 3677802 | + | NZ_CP054836.1 | Oricola thermophila |
| 46 | 1950214 | 1950498 | + | NC_010103.1 | Brucella canis ATCC 23365 |
| 47 | 1952042 | 1952326 | + | NC_004310.3 | Brucella suis 1330 |
| 48 | 41522 | 41806 | - | NC_003317.1 | Brucella melitensis bv. 1 str. 16M |
| 49 | 41697 | 41981 | - | NC_022905.1 | Brucella ceti TE10759-12 |
| 50 | 1956049 | 1956333 | + | NC_009505.1 | Brucella ovis ATCC 25840 |
| 51 | 1965822 | 1966106 | + | NC_007618.1 | Brucella abortus 2308 |
| 52 | 1953063 | 1953362 | + | NZ_CP072611.1 | Aureimonas populi |
| 53 | 2612631 | 2612912 | + | NZ_CP010803.1 | Martelella endophytica |
| 54 | 854568 | 854816 | - | NZ_CP058235.1 | Bartonella alsatica |
| 55 | 2402241 | 2402522 | + | NZ_CP020330.1 | Martelella mediterranea DSM 17316 |
| 56 | 2773436 | 2773738 | - | NZ_CP046908.1 | Stappia indica |
| 57 | 2991385 | 2991660 | + | NZ_CP019044.1 | Salaquimonas pukyongi |
| 58 | 544773 | 545042 | + | NZ_CP058907.1 | Rhodopseudomonas palustris |
| 59 | 3241239 | 3241499 | + | NC_014313.1 | Hyphomicrobium denitrificans ATCC 51888 |
| 60 | 2476368 | 2476640 | - | NC_010161.1 | Bartonella tribocorum CIP 105476 |
| 61 | 342176 | 342469 | + | NC_015259.1 | Polymorphum gilvum SL003B-26A1 |
| 62 | 1773908 | 1774180 | - | NZ_LR134527.1 | Bartonella elizabethae |
| 63 | 190697 | 190969 | - | NZ_CP031843.2 | Bartonella kosoyi |
| 64 | 144679 | 144927 | - | NZ_LR134529.1 | Bartonella vinsonii |
| 65 | 1902037 | 1902309 | - | NZ_CP031844.2 | Bartonella krasnovii |
| 66 | 573031 | 573300 | - | NZ_LS398110.1 | Bradyrhizobium vignae |
| 67 | 1465978 | 1466274 | - | NC_016026.1 | Micavibrio aeruginosavorus ARL-13 |
| 68 | 4372408 | 4372674 | + | NZ_CP027668.1 | Phreatobacter cathodiphilus |
| 69 | 1802236 | 1802514 | - | NZ_HG965802.1 | Bartonella henselae |
| 70 | 635398 | 635667 | - | NZ_CP030051.1 | Bradyrhizobium guangdongense |
| 71 | 447662 | 447937 | - | NC_007406.1 | Nitrobacter winogradskyi Nb-255 |
| 72 | 642353 | 642628 | - | NC_017082.1 | Bradyrhizobium cosmicum |
| 73 | 2238626 | 2238898 | - | NC_012846.1 | Bartonella grahamii as4aup |
| 74 | 30870 | 31139 | + | NZ_CP022221.1 | Bradyrhizobium zhanjiangense |
| 75 | 2955283 | 2955552 | - | NZ_CP029425.1 | Bradyrhizobium ottawaense |
| 76 | 1997536 | 1997805 | + | NZ_CP050066.1 | Bradyrhizobium symbiodeficiens |
| 77 | 1437399 | 1437677 | - | NC_014932.1 | Bartonella clarridgeiae 73 |
| 78 | 82810 | 83085 | - | NZ_CP022219.1 | Bradyrhizobium guangxiense |
| 79 | 646067 | 646336 | - | NZ_CP030050.1 | Bradyrhizobium arachidis |
| 80 | 2087694 | 2087960 | - | NZ_CP039690.1 | Phreatobacter stygius |
| 81 | 3657454 | 3657723 | - | NZ_CP044543.1 | Bradyrhizobium betae |
| 82 | 693615 | 693884 | - | NZ_CP058354.1 | Bradyrhizobium japonicum |
| 83 | 811551 | 811826 | - | NZ_CP030053.1 | Bradyrhizobium guangzhouense |
| 84 | 455111 | 455377 | - | NC_015684.1 | Afipia carboxidovorans OM5 |
| 85 | 3892754 | 3893035 | + | NC_010581.1 | Beijerinckia indica subsp. indica ATCC 9039 |
| 86 | 358254 | 358580 | + | NC_011666.1 | Methylocella silvestris BL2 |
| 87 | 109443 | 109712 | + | NZ_CP032617.1 | Bradyrhizobium diazoefficiens |
| 88 | 2160262 | 2160534 | - | NZ_CP021112.1 | Pseudorhodoplanes sinuspersici |
| 89 | 3903558 | 3903851 | - | NZ_CP041690.1 | Youhaiella tibetensis |
| 90 | 296547 | 296816 | - | NZ_CP029426.1 | Bradyrhizobium amphicarpaeae |
| 91 | 4720683 | 4720916 | + | NZ_LT960614.1 | Hartmannibacter diazotrophicus |
| 92 | 405249 | 405497 | - | NZ_CP010401.1 | Bartonella ancashensis |
| 93 | 7974389 | 7974658 | + | NC_020453.1 | Bradyrhizobium oligotrophicum S58 |
| 94 | 2324707 | 2325000 | - | NZ_CP068983.1 | Paradevosia shaoguanensis |
| 95 | 6182615 | 6182842 | + | NZ_CP017147.1 | Bosea vaviloviae |
| 96 | 2436674 | 2436952 | + | NZ_AP014946.1 | Variibacter gotjawalensis |
| 97 | 1496243 | 1496521 | - | NZ_AP019773.1 | Bartonella quintana |
| 98 | 560240 | 560530 | - | NZ_CP045423.1 | Microvirga thermotolerans |
| 99 | 547026 | 547301 | - | NC_007964.1 | Nitrobacter hamburgensis X14 |
| 100 | 1481678 | 1481938 | + | NZ_CP021404.1 | Pacificitalea manganoxidans |
| 101 | 5150166 | 5150450 | + | NZ_CP010836.1 | Sphingomonas hengshuiensis |
| 102 | 135754 | 136032 | + | NC_022997.1 | Hyphomicrobium nitrativorans NL23 |
| 103 | 355337 | 355615 | - | NZ_CP016428.1 | Bradyrhizobium icense |
| 104 | 396460 | 396735 | - | NZ_CP042968.1 | Bradyrhizobium paxllaeri |
| 105 | 1513523 | 1513822 | - | NC_020300.1 | Bartonella australis Aust/NH1 |
| 106 | 2472041 | 2472277 | - | NZ_CP035765.1 | Sphingomonas paucimobilis |
| 107 | 488425 | 488688 | + | NZ_CP060436.1 | Pseudooceanicola algae |
| 108 | 2831618 | 2831893 | + | NZ_CP042304.1 | Devosia ginsengisoli |
| 109 | 3185571 | 3185828 | - | NZ_CP004372.1 | Roseibacterium elongatum DSM 19469 |
| 110 | 3327625 | 3327897 | + | NZ_CP071057.1 | Marinicauda algicola |
| 111 | 1575390 | 1575647 | - | NZ_CP045201.1 | Pseudopuniceibacterium antarcticum |
| 112 | 2130075 | 2130359 | + | NZ_CP009571.1 | Sphingomonas taxi |
| 113 | 1755425 | 1755682 | + | NZ_CP015421.1 | Rhodovulum sulfidophilum |
| 114 | 4092720 | 4092983 | - | NZ_CP014327.1 | Halocynthiibacter arcticus |
| 115 | 3035466 | 3035732 | - | NZ_CP016616.1 | Microvirga ossetica |
| 116 | 1229660 | 1229914 | + | NC_020911.1 | Octadecabacter antarcticus 307 |
| 117 | 110710 | 110997 | + | NC_014006.1 | Sphingobium japonicum UT26S |
| 118 | 1121781 | 1122038 | + | NZ_CP032125.1 | Profundibacter amoris |
| 119 | 537619 | 537891 | + | NZ_CP029353.1 | Azospirillum thermophilum |
| 120 | 1063428 | 1063694 | + | NZ_CP011452.2 | Croceibacterium atlanticum |
| 121 | 2747438 | 2747722 | - | NZ_CP060035.1 | Sphingobium fuliginis |
| 122 | 6826332 | 6826613 | + | NC_011894.1 | Methylobacterium nodulans ORS 2060 |
| 123 | 3341872 | 3342156 | - | NZ_AP014648.1 | Methyloceanibacter caenitepidi |
| 124 | 76687 | 76956 | - | NC_014414.1 | Parvularcula bermudensis HTCC2503 |
| 125 | 92751 | 93029 | + | NC_008783.1 | Bartonella bacilliformis KC583 |
| 126 | 5709077 | 5709376 | - | NZ_CP047650.1 | Xylophilus rhododendri |
| 127 | 873354 | 873608 | + | NZ_CP041159.1 | Leisingera aquaemixtae |
| 128 | 2944571 | 2944828 | + | NZ_CP015093.1 | Salipiger abyssi |
| 129 | 1797007 | 1797267 | - | NZ_CP020538.1 | Sphingobium herbicidovorans |
| 130 | 2591409 | 2591693 | + | NC_009511.1 | Sphingomonas wittichii RW1 |
| 131 | 877297 | 877560 | - | NZ_CP022745.1 | Sphingobium xenophagum |
| 132 | 5858306 | 5858596 | - | NZ_CP006644.1 | Sphingomonas sanxanigenens DSM 19645 = NX02 |
| 133 | 4681146 | 4681430 | - | NZ_CP023449.1 | Rhizorhabdus dicambivorans |
| 134 | 2047820 | 2048059 | - | NZ_CP019239.1 | Rhodoferax saidenbachensis |
| 135 | 4239396 | 4239650 | - | NZ_CP003811.1 | Methylobacterium oryzae CBMB20 |
| 136 | 2131273 | 2131527 | - | NZ_CP015230.1 | Epibacterium mobile F1926 |
| 137 | 3934702 | 3934956 | - | NC_010505.1 | Methylobacterium radiotolerans JCM 2831 |
| 138 | 2616744 | 2617001 | - | NC_015730.1 | Roseobacter litoralis Och 149 |
| 139 | 1211664 | 1211936 | + | NZ_CP044331.1 | Methylocystis parvus |
| 140 | 1314305 | 1314574 | - | NZ_CP040818.1 | Paraoceanicella profunda |
| 141 | 1573562 | 1573792 | + | NZ_CP065748.1 | Delftia lacustris |
| 142 | 454538 | 454768 | - | NZ_CP017420.1 | Delftia tsuruhatensis |
| 143 | 1157273 | 1157536 | + | NZ_CP011805.1 | Pelagerythrobacter marensis |
| 144 | 1133571 | 1133801 | + | NZ_CP003984.1 | Planktomarina temperata RCA23 |
| 145 | 2442829 | 2443059 | - | NZ_CP020121.1 | Comamonas kerstersii |
| 146 | 1325436 | 1325693 | + | NZ_CP034588.1 | Silicimonas algicola |
| 147 | 2133974 | 2134243 | + | NC_015677.1 | Ramlibacter tataouinensis TTB310 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP015880.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF11775.10 | 0.71 | 105 | 2032 | opposite-strand | Cobalamin biosynthesis protein CobT VWA domain |
| 2 | PF06213.14 | 0.71 | 105 | 2032 | opposite-strand | Cobalamin biosynthesis protein CobT |
| 3 | PF12556.10 | 0.82 | 120 | 963.0 | opposite-strand | Cobaltochelatase CobS subunit N terminal |
| 4 | PF07728.16 | 0.82 | 121 | 965 | opposite-strand | AAA domain (dynein-related subfamily) |
| 5 | PF00226.33 | 0.9 | 132 | 114.5 | opposite-strand | DnaJ domain |
++ More..