Result : P23080
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Photosystem I reaction center subunit IX |
| NCBI Accession ID | X93923.1 |
| Organism | Trichormus variabilis (strain ATCC 29413 / PCC 7937) (Anabaena variabilis) |
| Left | 1038 |
| Right | 1187 |
| Strand | + |
| Nucleotide Sequence | ATGGCAGACAAAGCTGACCAATCTAGCTACCTAATTAAATTCATTTCCACAGCACCAGTTGCAGCTACTATCTGGCTGATAATCACGGCTGGGATTTTGATTGAATTCAATCGCTTTTTTCCAGATCTACTTTTCCATCCCTTACCATAA |
| Sequence | MADKADQSSYLIKFISTAPVAATIWLIITAGILIEFNRFFPDLLFHPLP |
| Source of smORF | Swiss-Prot |
| Function | May help in the organization of the PsaE and PsaF subunits. |
| Pubmed ID | 25197444 1908790 |
| Domain | CDD:420030 |
| Functional Category | Others |
| Uniprot ID | P23080 |
| ORF Length (Amino Acid) | 49 |
++ More..
| Conservation Analysis |
No. of Species: 16
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3106894 | 3107043 | - | NZ_CP047242.1 | Trichormus variabilis 0441 |
| 2 | 3411957 | 3412106 | - | NZ_CP060822.1 | Cylindrospermopsis curvispora GIHE-G1 |
| 3 | 679685 | 679834 | + | NC_019771.1 | Anabaena cylindrica PCC 7122 |
| 4 | 5099507 | 5099656 | + | NC_014248.1 | 'Nostoc azollae' 0708 |
| 5 | 4875708 | 4875857 | + | NC_010628.1 | Nostoc punctiforme PCC 73102 |
| 6 | 2975515 | 2975664 | - | NZ_CP054698.1 | Nostoc edaphicum CCNP1411 |
| 7 | 4211954 | 4212103 | - | NZ_CP024785.1 | Nostoc flagelliforme CCNUN1 |
| 8 | 5549867 | 5550016 | - | NZ_CP031941.1 | Nostoc sphaeroides |
| 9 | 43585 | 43716 | - | NZ_CP018092.1 | Synechococcus lividus PCC 6715 |
| 10 | 1141805 | 1141933 | + | NC_019729.1 | Oscillatoria nigro-viridis PCC 7112 |
| 11 | 750425 | 750550 | - | NZ_AP018202.1 | Thermostichus vulcanus NIES-2134 |
| 12 | 2524509 | 2524634 | + | NC_004113.1 | Thermosynechococcus vestitus BP-1 |
| 13 | 4343975 | 4344103 | + | NC_010296.1 | Microcystis aeruginosa NIES-843 |
| 14 | 5748913 | 5749044 | + | NC_019751.1 | Calothrix sp. PCC 6303 |
| 15 | 1430824 | 1430979 | - | NC_009925.1 | Acaryochloris marina MBIC11017 |
| 16 | 2028341 | 2028490 | - | NC_019695.1 | Chroococcidiopsis thermalis PCC 7203 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP047242.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF04025.14 | 0.62 | 10 | 1705.0 | opposite-strand | Domain of unknown function (DUF370) |
| 2 | PF00625.23 | 0.62 | 10 | 879.5 | opposite-strand | Guanylate kinase |
| 3 | PF02605.17 | 0.69 | 11 | 274 | same-strand | Photosystem I reaction centre subunit XI |
| 4 | PF00814.27 | 0.75 | 12 | 809.0 | opposite-strand | tRNA N6-adenosine threonylcarbamoyltransferase |
++ More..