Result : P22876
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Probable excisionase |
| NCBI Accession ID | M35138.1 |
| Organism | Saccharopolyspora erythraea (Streptomyces erythraeus) |
| Left | 791 |
| Right | 1087 |
| Strand | + |
| Nucleotide Sequence | ATGACCACGAACGTCACCCAACTCGCCGCCACGCTCGCCTCGCTCGCGGCCCTGCTCGCCGAACAGCAGCCCGCCCCGGAACCCGAGCCCGAACCGGCCGCCCGCAGGCTGCCCAACCGCGTGCTGCTCACGGTCGAGGAAGCGGCCAAGCAACTGGGGCTCGGCAGGACCAAGACCTACGCGCTGGTGGCGTCTGGCGAGATCGAATCTGTCCGGATCGGTCGGCTCAGGCGCATCCCGCGCACCGCCATCGACGACTACGCCGCCCGACTCATCGCCCAGCAGAGCGCCGCCTGA |
| Sequence | MTTNVTQLAATLASLAALLAEQQPAPEPEPEPAARRLPNRVLLTVEEAAKQLGLGRTKTYALVASGEIESVRIGRLRRIPRTAIDDYAARLIAQQSAA |
| Source of smORF | Swiss-Prot |
| Function | Possibly a non-classical excisionase. |
| Pubmed ID | 2180909 |
| Domain | CDD:413393 |
| Functional Category | DNA-binding |
| Uniprot ID | P22876 |
| ORF Length (Amino Acid) | 98 |
++ More..
| Conservation Analysis |
No. of Species: 4
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 7838819 | 7839115 | + | NC_009142.1 | Saccharopolyspora erythraea NRRL 2338 |
| 2 | 217502 | 217789 | - | NZ_AP018920.1 | Pseudonocardia autotrophica |
| 3 | 188197 | 188499 | - | NC_013093.1 | Actinosynnema mirum DSM 43827 |
| 4 | 377466 | 377738 | - | NC_022116.1 | Amycolatopsis mediterranei RB |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_009142.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF12307.10 | 1.0 | 4 | -3.0 | same-strand | Protein of unknown function (DUF3631) |
++ More..