* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP013984.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF07070.13
|
1.0
|
4
|
3681.5
|
opposite-strand
|
SpoOM protein
|
2
|
PF03575.19
|
1.0
|
4
|
2213.5
|
same-strand
|
Peptidase family S51
|
3
|
PF01964.20
|
1.0
|
4
|
132.5
|
same-strand
|
Radical SAM ThiC family
|
4
|
PF13667.8
|
1.0
|
4
|
132.5
|
same-strand
|
ThiC-associated domain
|
5
|
PF00199.21
|
1.0
|
4
|
35.5
|
opposite-strand
|
Catalase
|
6
|
PF06628.14
|
1.0
|
4
|
35.5
|
opposite-strand
|
Catalase-related immune-responsive
|
7
|
PF00005.29
|
1.0
|
4
|
1767.0
|
same-strand
|
ABC transporter
|
8
|
PF00004.31
|
0.75
|
3
|
1777
|
same-strand
|
ATPase family associated with various cellular activities (AAA)
|
9
|
PF13401.8
|
0.75
|
3
|
1777
|
same-strand
|
AAA domain
|
10
|
PF09084.13
|
1.0
|
4
|
2681.0
|
same-strand
|
NMT1/THI5 like
|
11
|
PF13379.8
|
1.0
|
4
|
2681.0
|
same-strand
|
NMT1-like family
|
12
|
PF04069.14
|
1.0
|
4
|
2681.0
|
same-strand
|
Substrate binding domain of ABC-type glycine betaine transport system
|
13
|
PF00528.24
|
1.0
|
4
|
3676.0
|
same-strand
|
Binding-protein-dependent transport system inner membrane component
|
14
|
PF00296.22
|
1.0
|
4
|
4529.0
|
same-strand
|
Luciferase-like monooxygenase
|
15
|
PF07875.14
|
0.75
|
3
|
3028
|
opposite-strand
|
Coat F domain
|
++ More..