* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_003197.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF03237.17
|
0.75
|
6
|
3889.5
|
opposite-strand
|
Terminase large subunit, T4likevirus-type, N-terminal
|
2
|
PF17289.4
|
0.75
|
6
|
3889.5
|
opposite-strand
|
Terminase RNaseH-like domain
|
3
|
PF06056.14
|
0.75
|
6
|
3889.5
|
opposite-strand
|
Putative ATPase subunit of terminase (gpP-like)
|
4
|
PF05929.13
|
0.62
|
5
|
5791
|
same-strand
|
Phage capsid scaffolding protein (GPO) serine peptidase
|
5
|
PF05840.15
|
0.88
|
7
|
352
|
same-strand
|
Bacteriophage replication gene A protein (GPA)
|
6
|
PF02086.17
|
0.75
|
6
|
2767.5
|
same-strand
|
D12 class N6 adenine-specific DNA methyltransferase
|
7
|
PF01258.19
|
0.88
|
7
|
3617
|
same-strand
|
Prokaryotic dksA/traR C4-type zinc finger
|
8
|
PF10809.10
|
0.75
|
6
|
3842.0
|
same-strand
|
Protein of unknown function (DUF2732)
|
++ More..