Result : P20927
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Frd operon uncharacterized protein C |
| NCBI Accession ID | X06151.1 |
| Organism | Proteus vulgaris |
| Left | 900 |
| Right | 1190 |
| Strand | + |
| Nucleotide Sequence | ATGTGCCTTGGTATTCCAGGTCAAGTTGTTGAAGTGGGAAAAACCATCACTGAAAATGCATTGGTCGATGTTTGTGGTGTTAAGCGTGAAGTGAATATCGCATTAGTTTGTGAAGGCGAGCCTGATACGATGATTGGTAAGTGGGTATTAGTGCATGTGGGTTTTGCCATGAGTATCGTTAACGAACAAGAAGCACAAGAAACCCTTAACGCATTGATGGCGATGGGGGAAGTCGAAGACGATGTGAGTGCTTTTCTCTATGGTGAGGAAAGTACAGCTAAACGTGCTTGA |
| Sequence | MCLGIPGQVVEVGKTITENALVDVCGVKREVNIALVCEGEPDTMIGKWVLVHVGFAMSIVNEQEAQETLNALMAMGEVEDDVSAFLYGEESTAKRA |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00394. Profile Description: HupF/HypC family. This protein is suggested by act as a chaperone for a hydrogenase large subunit, holding the precursor form before metallocenter nickel incorporation. [SS 12/31/03] More recently proposed additional function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. . Added metallochaperone and protein mod GO terms. [Protein fate, Protein folding and stabilization, Protein fate, Protein modification and repair] |
| Pubmed ID | 3308458 |
| Domain | CDD:412356 |
| Functional Category | Others |
| Uniprot ID | P20927 |
| ORF Length (Amino Acid) | 96 |
++ More..
| Conservation Analysis |
No. of Species: 115
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3916190 | 3916480 | + | NC_010554.1 | Proteus mirabilis HI4320 |
| 2 | 434191 | 434481 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 3 | 2030412 | 2030702 | + | NZ_CP026364.1 | Proteus hauseri |
| 4 | 1426643 | 1426915 | - | NZ_CP023536.1 | Providencia alcalifaciens |
| 5 | 1706187 | 1706483 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 6 | 784439 | 784735 | - | NZ_CP050150.1 | Hafnia alvei |
| 7 | 628531 | 628824 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 8 | 2326714 | 2327007 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 9 | 345510 | 345803 | + | NZ_CP029185.2 | Limnobaculum parvum |
| 10 | 4047750 | 4048043 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 11 | 1301679 | 1301951 | - | NZ_LS483422.1 | Providencia heimbachae |
| 12 | 3453396 | 3453692 | - | NZ_LS483422.1 | Providencia heimbachae |
| 13 | 4168386 | 4168679 | + | NZ_CP011254.1 | Serratia fonticola |
| 14 | 4259967 | 4260242 | + | NZ_CP011254.1 | Serratia fonticola |
| 15 | 3163455 | 3163748 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 16 | 1087887 | 1088180 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 17 | 3515788 | 3516084 | - | NZ_LS483470.1 | Leminorella richardii |
| 18 | 1649630 | 1649926 | + | NZ_CP029736.1 | Providencia rettgeri |
| 19 | 2982045 | 2982341 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 20 | 1739420 | 1739695 | + | NZ_LT906463.1 | Haemophilus pittmaniae |
| 21 | 1656450 | 1656725 | + | NZ_LR134327.1 | Aggregatibacter aphrophilus ATCC 33389 |
| 22 | 3070898 | 3071173 | - | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 23 | 31905 | 32183 | + | NZ_CP067057.1 | Rahnella aceris |
| 24 | 2600237 | 2600533 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 25 | 1040010 | 1040285 | - | NZ_CP009460.1 | Dickeya fangzhongdai |
| 26 | 4468555 | 4468842 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 27 | 1596512 | 1596787 | + | NZ_LS483458.1 | Haemophilus haemolyticus |
| 28 | 1504025 | 1504300 | + | NZ_LS483443.1 | Aggregatibacter segnis ATCC 33393 |
| 29 | 1383019 | 1383309 | + | NZ_LT615367.1 | Dickeya aquatica |
| 30 | 1534565 | 1534840 | + | NZ_LT615367.1 | Dickeya aquatica |
| 31 | 3857126 | 3857401 | + | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 32 | 449442 | 449729 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 33 | 1567841 | 1568119 | + | NZ_CP030753.1 | Actinobacillus pleuropneumoniae |
| 34 | 2967149 | 2967439 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 35 | 1471536 | 1471802 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 36 | 1641103 | 1641378 | + | NZ_CP031560.1 | Dickeya dianthicola |
| 37 | 3241374 | 3241661 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 38 | 3067511 | 3067798 | - | NZ_CP025799.1 | Dickeya zeae |
| 39 | 1727375 | 1727653 | + | NZ_CP025799.1 | Dickeya zeae |
| 40 | 2676715 | 2676990 | - | NZ_CP042220.2 | Dickeya poaceiphila |
| 41 | 1348001 | 1348288 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 42 | 2660201 | 2660494 | + | NZ_LR134494.1 | Serratia quinivorans |
| 43 | 3257736 | 3258023 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 44 | 1688887 | 1689162 | + | NC_014500.1 | Dickeya dadantii 3937 |
| 45 | 3105374 | 3105643 | - | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 46 | 1852378 | 1852653 | + | NZ_CP015031.1 | Basfia succiniciproducens |
| 47 | 2285838 | 2286113 | - | NC_006300.1 | [Mannheimia] succiniciproducens MBEL55E |
| 48 | 747872 | 748159 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 49 | 2417104 | 2417373 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 50 | 4641343 | 4641636 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 51 | 422719 | 422991 | - | NZ_LT906448.1 | Pasteurella dagmatis |
| 52 | 2563665 | 2563952 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 53 | 2506316 | 2506585 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 54 | 1405701 | 1405976 | + | NZ_CP009610.1 | Haemophilus influenzae |
| 55 | 169873 | 170151 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 56 | 3252403 | 3252675 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 57 | 3001090 | 3001362 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 58 | 4059420 | 4059668 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 59 | 3797479 | 3797751 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 60 | 2004607 | 2004855 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 61 | 96598 | 96870 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 62 | 821892 | 822164 | + | NZ_CP053416.1 | Salmonella bongori |
| 63 | 900701 | 900973 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 64 | 3894470 | 3894742 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 65 | 2820212 | 2820484 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 66 | 2851864 | 2852136 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 67 | 3575675 | 3575947 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 68 | 4075737 | 4076009 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 69 | 733078 | 733329 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 70 | 1105802 | 1106074 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 71 | 3343203 | 3343475 | + | NZ_LR134340.1 | Escherichia marmotae |
| 72 | 4139065 | 4139337 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 73 | 5097013 | 5097261 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 74 | 1638182 | 1638454 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 75 | 2787729 | 2788001 | + | NZ_AP014857.1 | Escherichia albertii |
| 76 | 5066484 | 5066744 | - | NZ_CP023525.1 | Cedecea neteri |
| 77 | 107681 | 107959 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 78 | 530907 | 531194 | + | NZ_CP046293.1 | Yersinia intermedia |
| 79 | 1616803 | 1617081 | + | NZ_CP046293.1 | Yersinia intermedia |
| 80 | 1918137 | 1918385 | - | NZ_CP033744.1 | Citrobacter freundii |
| 81 | 1648184 | 1648456 | + | NZ_CP033744.1 | Citrobacter freundii |
| 82 | 3492425 | 3492697 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 83 | 367536 | 367820 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 84 | 2918284 | 2918559 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 85 | 4429138 | 4429410 | - | NZ_CP038469.1 | Citrobacter tructae |
| 86 | 3864886 | 3865140 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 87 | 4171630 | 4171902 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 88 | 746113 | 746397 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 89 | 3109293 | 3109571 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 90 | 2503718 | 2503996 | - | NZ_CP032487.1 | Yersinia hibernica |
| 91 | 4026419 | 4026703 | - | NZ_CP032487.1 | Yersinia hibernica |
| 92 | 5145997 | 5146266 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 93 | 3927621 | 3927908 | - | NZ_CP043727.1 | Yersinia canariae |
| 94 | 3065625 | 3065903 | - | NZ_CP043727.1 | Yersinia canariae |
| 95 | 4676609 | 4676869 | - | NZ_LR134201.1 | Cedecea lapagei |
| 96 | 2163613 | 2163897 | - | NZ_CP009787.1 | Yersinia rohdei |
| 97 | 33989 | 34267 | + | NZ_CP009787.1 | Yersinia rohdei |
| 98 | 3849826 | 3850098 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 99 | 1484599 | 1484877 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 100 | 1374419 | 1374694 | + | NZ_CP026377.1 | Mixta gaviniae |
| 101 | 1899615 | 1899893 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 102 | 162519 | 162779 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 103 | 2043794 | 2044078 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 104 | 4323968 | 4324246 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 105 | 2268670 | 2268948 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 106 | 1059015 | 1059287 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 107 | 2110215 | 2110493 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 108 | 1037546 | 1037818 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 109 | 597478 | 597750 | + | NZ_CP026047.1 | Raoultella planticola |
| 110 | 1095200 | 1095472 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 111 | 1924118 | 1924396 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 112 | 2151531 | 2151806 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 113 | 3601209 | 3601481 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 114 | 465630 | 465908 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 115 | 1213079 | 1213351 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 116 | 1316996 | 1317268 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 117 | 4692812 | 4693084 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 118 | 1012453 | 1012725 | - | NZ_CP041247.1 | Raoultella electrica |
| 119 | 2738287 | 2738565 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 120 | 1894877 | 1895155 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 121 | 1075286 | 1075558 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 122 | 4167116 | 4167388 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 123 | 1082226 | 1082498 | - | NZ_CP054254.1 | Klebsiella variicola |
| 124 | 885391 | 885711 | + | NZ_AP020335.1 | Hydrogenovibrio marinus |
| 125 | 963555 | 963827 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 126 | 4680815 | 4681087 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 127 | 3699010 | 3699282 | + | NC_015968.1 | Enterobacter soli |
| 128 | 3996118 | 3996390 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 129 | 1447420 | 1447692 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 130 | 3654957 | 3655229 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 131 | 3791145 | 3791417 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 132 | 3698534 | 3698806 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 133 | 1385252 | 1385530 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 134 | 2325100 | 2325384 | - | NZ_CP043869.1 | Neptunomonas concharum |
| 135 | 693911 | 694171 | + | NZ_CP047242.1 | Trichormus variabilis 0441 |
| 136 | 2410638 | 2410910 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 137 | 10242763 | 10243035 | - | NZ_CP035758.1 | Ktedonosporobacter rubrisoli |
| 138 | 4368225 | 4368482 | + | NZ_CP022684.1 | Ketobacter alkanivorans |
| 139 | 676251 | 676550 | + | NC_009937.1 | Azorhizobium caulinodans ORS 571 |
| 140 | 4209080 | 4209361 | + | NZ_CP035704.1 | Pseudolysobacter antarcticus |
| 141 | 2210605 | 2210880 | - | NZ_CP041146.1 | Nocardioides humi |
| 142 | 44691 | 44960 | + | NZ_LT906483.1 | Mycolicibacterium thermoresistibile |
| 143 | 9772125 | 9772382 | - | NZ_CP034539.1 | Streptomyces cyaneochromogenes |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP067057.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00158.28 | 0.64 | 74 | 2220.5 | same-strand | Sigma-54 interaction domain |
| 2 | PF14532.8 | 0.64 | 74 | 2220.5 | same-strand | Sigma-54 interaction domain |
| 3 | PF01590.28 | 0.63 | 72 | 2221 | same-strand | GAF domain |
| 4 | PF07728.16 | 0.64 | 74 | 2221 | same-strand | AAA domain (dynein-related subfamily) |
| 5 | PF13185.8 | 0.62 | 71 | 2221.0 | same-strand | GAF domain |
| 6 | PF00004.31 | 0.63 | 73 | 2221.0 | same-strand | ATPase family associated with various cellular activities (AAA) |
| 7 | PF13187.8 | 0.83 | 96 | 1976.0 | opposite-strand | 4Fe-4S dicluster domain |
| 8 | PF00037.29 | 0.83 | 96 | 1976.0 | opposite-strand | 4Fe-4S binding domain |
| 9 | PF12838.9 | 0.83 | 95 | 1976.0 | opposite-strand | 4Fe-4S dicluster domain |
| 10 | PF01155.21 | 0.89 | 102 | 867.0 | same-strand | Hydrogenase/urease nickel incorporation, metallochaperone, hypA |
| 11 | PF02492.21 | 0.85 | 98 | -9.0 | same-strand | CobW/HypB/UreG, nucleotide-binding domain |
| 12 | PF01924.18 | 0.87 | 100 | 0.0 | same-strand | Hydrogenase formation hypA family |
| 13 | PF02769.24 | 0.87 | 100 | 1118 | same-strand | AIR synthase related protein, C-terminal domain |
| 14 | PF00586.26 | 0.87 | 100 | 1118 | same-strand | AIR synthase related protein, N-terminal domain |
| 15 | PF00361.22 | 0.66 | 76 | 2591.0 | opposite-strand | Proton-conducting membrane transporter |
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