Result : P18399
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Nitrogen fixation protein FixS |
| NCBI Accession ID | Z21854.1 |
| Organism | Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti) |
| Left | 12942 |
| Right | 13109 |
| Strand | + |
| Nucleotide Sequence | ATGAACACCCTTATCTATCTCATTCCAGTCGCACTCAGTCTCGGTGGTCTGGGGCTCGTCGCATTTCTGTGGGCGCTCAAGAGCGGGCAGTACGAGGACCTCGACGGAGCGTCCTGGCGCATACTCGACGACGGCGATGGCGAGGGTGAATCAAGCCAGACTTTATAG |
| Sequence | MNTLIYLIPVALSLGGLGLVAFLWALKSGQYEDLDGASWRILDDGDGEGESSQTL |
| Source of smORF | Swiss-Prot |
| Function | The four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalyzed by FixG. |
| Pubmed ID | 2536685 11481432 11474104 |
| Domain | CDD:412814 |
| Functional Category | Others |
| Uniprot ID | P18399 |
| ORF Length (Amino Acid) | 55 |
++ More..
| Conservation Analysis |
No. of Species: 137
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 662290 | 662457 | - | NC_020527.1 | Sinorhizobium meliloti 2011 |
| 2 | 2318552 | 2318710 | - | NZ_CP041238.1 | Ensifer mexicanus |
| 3 | 1801112 | 1801270 | - | NZ_CP015880.1 | Ensifer adhaerens |
| 4 | 1850791 | 1850949 | - | NZ_CP023067.1 | Ensifer sojae CCBAU 05684 |
| 5 | 1817973 | 1818131 | - | NZ_CP034909.1 | Ensifer alkalisoli |
| 6 | 1444856 | 1445011 | + | NZ_CP059896.1 | Ciceribacter thiooxidans |
| 7 | 131507 | 131665 | - | NZ_CP013501.1 | Rhizobium esperanzae |
| 8 | 599257 | 599415 | + | NZ_CP048632.1 | Rhizobium oryzihabitans |
| 9 | 162997 | 163155 | - | NZ_CP071457.1 | Rhizobium lentis |
| 10 | 848527 | 848685 | - | NZ_CP020911.1 | Rhizobium etli |
| 11 | 170365 | 170523 | - | NZ_CP013533.1 | Rhizobium phaseoli |
| 12 | 1143429 | 1143587 | - | NZ_CP061003.1 | Agrobacterium tumefaciens |
| 13 | 175924 | 176082 | - | NZ_CP071616.1 | Rhizobium bangladeshense |
| 14 | 2146569 | 2146727 | - | NZ_CP006880.1 | Rhizobium gallicum bv. gallicum R602sp |
| 15 | 5620538 | 5620693 | - | NC_019973.1 | Mesorhizobium australicum WSM2073 |
| 16 | 5273272 | 5273424 | + | NZ_CP015318.1 | Mesorhizobium amorphae CCNWGS0123 |
| 17 | 4260823 | 4260969 | + | NZ_HG938353.1 | Neorhizobium galegae bv. orientalis str. HAMBI 540 |
| 18 | 354624 | 354782 | - | NZ_CP071606.1 | Rhizobium binae |
| 19 | 2158848 | 2159006 | - | NZ_CP013107.1 | Sinorhizobium americanum |
| 20 | 638417 | 638572 | + | NZ_CP054836.1 | Oricola thermophila |
| 21 | 3442160 | 3442333 | - | NZ_CP021112.1 | Pseudorhodoplanes sinuspersici |
| 22 | 358785 | 358943 | - | NZ_CP071615.1 | Rhizobium bangladeshense |
| 23 | 5241321 | 5241470 | + | NC_002678.2 | Mesorhizobium japonicum MAFF 303099 |
| 24 | 5424217 | 5424372 | - | NC_002678.2 | Mesorhizobium japonicum MAFF 303099 |
| 25 | 114888 | 115046 | - | NZ_CP071608.1 | Rhizobium binae |
| 26 | 6285609 | 6285764 | - | NZ_CP033507.1 | Mesorhizobium jarvisii |
| 27 | 628730 | 628888 | - | NZ_CP071678.1 | Rhizobium ruizarguesonis |
| 28 | 566600 | 566755 | + | NZ_CP050299.1 | Mesorhizobium huakuii |
| 29 | 2045372 | 2045530 | - | NZ_CP029451.1 | Sinorhizobium fredii CCBAU 25509 |
| 30 | 2500470 | 2500631 | - | NZ_CP019044.1 | Salaquimonas pukyongi |
| 31 | 5961622 | 5961771 | - | NZ_CP033361.1 | Mesorhizobium erdmanii |
| 32 | 2923197 | 2923370 | + | NZ_CP071057.1 | Marinicauda algicola |
| 33 | 8312646 | 8312813 | - | NZ_CP029425.1 | Bradyrhizobium ottawaense |
| 34 | 817082 | 817246 | - | NC_015684.1 | Afipia carboxidovorans OM5 |
| 35 | 1017790 | 1017942 | - | NC_015684.1 | Afipia carboxidovorans OM5 |
| 36 | 5208007 | 5208156 | - | NZ_LT960614.1 | Hartmannibacter diazotrophicus |
| 37 | 2463048 | 2463203 | - | NZ_CP060052.1 | Croceicoccus marinus |
| 38 | 1645740 | 1645907 | + | NZ_CP022219.1 | Bradyrhizobium guangxiense |
| 39 | 7557181 | 7557318 | + | NC_011894.1 | Methylobacterium nodulans ORS 2060 |
| 40 | 365335 | 365493 | - | NZ_CP013535.1 | Rhizobium phaseoli |
| 41 | 3181785 | 3181952 | + | NZ_CP030050.1 | Bradyrhizobium arachidis |
| 42 | 516499 | 516636 | - | NZ_CP029550.1 | Methylobacterium durans |
| 43 | 1819355 | 1819522 | + | NZ_CP029426.1 | Bradyrhizobium amphicarpaeae |
| 44 | 456734 | 456901 | - | NZ_CP050066.1 | Bradyrhizobium symbiodeficiens |
| 45 | 55345 | 55500 | - | NZ_CP015322.1 | Mesorhizobium amorphae CCNWGS0123 |
| 46 | 1960473 | 1960658 | - | NZ_CP022889.1 | Tsuneonella mangrovi |
| 47 | 172517 | 172678 | + | NZ_CP032696.1 | Rhizobium jaguaris |
| 48 | 2984083 | 2984250 | + | NZ_CP032617.1 | Bradyrhizobium diazoefficiens |
| 49 | 369006 | 369164 | - | NZ_CP013502.1 | Rhizobium esperanzae |
| 50 | 1787495 | 1787644 | + | NC_012982.1 | Hirschia baltica ATCC 49814 |
| 51 | 5264057 | 5264227 | - | NZ_CP030053.1 | Bradyrhizobium guangzhouense |
| 52 | 2875670 | 2875837 | + | NZ_CP058354.1 | Bradyrhizobium japonicum |
| 53 | 638920 | 639078 | - | NZ_CP034999.1 | Rhizobium acidisoli |
| 54 | 2032696 | 2032851 | - | NZ_LR723670.1 | Pseudorhizobium flavum |
| 55 | 3930222 | 3930368 | + | NZ_LR723670.1 | Pseudorhizobium flavum |
| 56 | 1907840 | 1907995 | - | NZ_FO082820.1 | Pseudorhizobium banfieldiae |
| 57 | 2286851 | 2287000 | - | NZ_CP034179.1 | Caenibius tardaugens NBRC 16725 |
| 58 | 1386006 | 1386173 | + | NZ_AP014648.1 | Methyloceanibacter caenitepidi |
| 59 | 458254 | 458412 | - | NZ_CP064063.1 | Brucella anthropi |
| 60 | 2138937 | 2139092 | + | NZ_CP054599.1 | Sulfitobacter pseudonitzschiae |
| 61 | 973778 | 973930 | + | NZ_CP015963.1 | Altererythrobacter ishigakiensis |
| 62 | 3686351 | 3686500 | - | NZ_CP032509.1 | Georhizobium profundi |
| 63 | 3155579 | 3155752 | - | NZ_CP042304.1 | Devosia ginsengisoli |
| 64 | 2459159 | 2459302 | + | NZ_LR588407.1 | Brevundimonas vancanneytii |
| 65 | 476616 | 476795 | - | NZ_CP024199.1 | Thalassospira marina |
| 66 | 1067019 | 1067192 | + | NZ_CP053856.1 | Rhizobium pusense |
| 67 | 1660063 | 1660221 | + | NC_022997.1 | Hyphomicrobium nitrativorans NL23 |
| 68 | 257839 | 258018 | - | NZ_CP041025.1 | Paremcibacter congregatus |
| 69 | 747699 | 747869 | + | NZ_CP046052.1 | Methylocystis heyeri |
| 70 | 1641596 | 1641745 | - | NZ_CP045423.1 | Microvirga thermotolerans |
| 71 | 1222700 | 1222870 | + | NZ_CP030126.1 | Indioceanicola profundi |
| 72 | 98643 | 98801 | - | NC_020908.1 | Octadecabacter arcticus 238 |
| 73 | 890313 | 890462 | - | NZ_CP049250.1 | Rhizobium rhizoryzae |
| 74 | 1834150 | 1834299 | - | NZ_CP016033.1 | Erythrobacter neustonensis |
| 75 | 2513218 | 2513376 | - | NZ_CP060436.1 | Pseudooceanicola algae |
| 76 | 3700049 | 3700207 | + | NZ_CP045201.1 | Pseudopuniceibacterium antarcticum |
| 77 | 4101123 | 4101275 | - | NZ_CP041636.1 | Ferrovibrio terrae |
| 78 | 3287297 | 3287455 | + | NZ_CP049037.1 | Pseudohalocynthiibacter aestuariivivens |
| 79 | 255472 | 255633 | - | NZ_CP042264.1 | Qingshengfaniella alkalisoli |
| 80 | 2479722 | 2479877 | + | NZ_CP053921.1 | Erythrobacter mangrovi |
| 81 | 2852973 | 2853113 | - | NZ_CP022745.1 | Sphingobium xenophagum |
| 82 | 1308718 | 1308891 | + | NZ_CP021404.1 | Pacificitalea manganoxidans |
| 83 | 3023385 | 3023543 | - | NZ_CP010650.1 | Phaeobacter inhibens |
| 84 | 2008566 | 2008715 | - | NC_009511.1 | Sphingomonas wittichii RW1 |
| 85 | 3425892 | 3426068 | - | NZ_CP034588.1 | Silicimonas algicola |
| 86 | 1065496 | 1065663 | + | NZ_CP013002.1 | Caulobacter henricii |
| 87 | 493514 | 493672 | + | NZ_CP016364.1 | Phaeobacter porticola |
| 88 | 4193310 | 4193486 | + | NZ_CP046908.1 | Stappia indica |
| 89 | 1075887 | 1076054 | + | NZ_CP049241.1 | Rhizobium pseudoryzae |
| 90 | 3431437 | 3431586 | + | NZ_CP051131.1 | Parasphingopyxis algicola |
| 91 | 518680 | 518838 | + | NC_023135.1 | Leisingera methylohalidivorans DSM 14336 |
| 92 | 2056486 | 2056647 | + | NZ_CP027850.1 | Caulobacter segnis |
| 93 | 3179288 | 3179452 | - | NC_014664.1 | Rhodomicrobium vannielii ATCC 17100 |
| 94 | 420463 | 420621 | + | NZ_CP021047.1 | Phaeobacter gallaeciensis |
| 95 | 611001 | 611153 | - | NZ_AP017655.1 | Sphingobium cloacae |
| 96 | 673314 | 673472 | + | NC_009952.1 | Dinoroseobacter shibae DFL 12 = DSM 16493 |
| 97 | 2556368 | 2556526 | - | NZ_CP041159.1 | Leisingera aquaemixtae |
| 98 | 1582301 | 1582468 | + | NC_011916.1 | Caulobacter vibrioides NA1000 |
| 99 | 5633921 | 5634091 | - | NZ_CP030051.1 | Bradyrhizobium guangdongense |
| 100 | 399711 | 399884 | - | NZ_CP022604.1 | [Ochrobactrum] quorumnocens |
| 101 | 1320742 | 1320897 | + | NZ_CP015064.1 | Mesorhizobium ciceri biovar biserrulae |
| 102 | 4332833 | 4333018 | - | NZ_CP042968.1 | Bradyrhizobium paxllaeri |
| 103 | 2584932 | 2585090 | - | NZ_CP015230.1 | Epibacterium mobile F1926 |
| 104 | 6201609 | 6201770 | + | NC_015675.1 | Mesorhizobium opportunistum WSM2075 |
| 105 | 6246249 | 6246404 | - | NC_015675.1 | Mesorhizobium opportunistum WSM2075 |
| 106 | 554661 | 554816 | - | NZ_CP042345.1 | Novosphingobium ginsenosidimutans |
| 107 | 1941722 | 1941868 | + | NZ_CP010836.1 | Sphingomonas hengshuiensis |
| 108 | 336749 | 336901 | - | NZ_CP012669.1 | Altererythrobacter epoxidivorans |
| 109 | 1256909 | 1257076 | - | NZ_CP044543.1 | Bradyrhizobium betae |
| 110 | 5378941 | 5379108 | - | NC_017082.1 | Bradyrhizobium cosmicum |
| 111 | 92103 | 92261 | - | NZ_CP060782.1 | Sphingomonas sediminicola |
| 112 | 907450 | 907602 | + | NZ_CP024920.1 | Qipengyuania seohaensis |
| 113 | 4773715 | 4773876 | + | NC_007626.1 | Magnetospirillum magneticum AMB-1 |
| 114 | 5156508 | 5156657 | + | NC_009937.1 | Azorhizobium caulinodans ORS 571 |
| 115 | 79965 | 80117 | - | NC_015689.1 | Afipia carboxidovorans OM5 |
| 116 | 2468483 | 2468626 | + | NZ_CP036532.1 | Roseitalea porphyridii |
| 117 | 1616274 | 1616432 | + | NC_022905.1 | Brucella ceti TE10759-12 |
| 118 | 4725543 | 4725707 | + | NC_014217.1 | Starkeya novella DSM 506 |
| 119 | 1151068 | 1151211 | - | NZ_CP016591.1 | Tsuneonella dongtanensis |
| 120 | 2512331 | 2512504 | - | NZ_CP029353.1 | Azospirillum thermophilum |
| 121 | 367932 | 368090 | - | NC_010103.1 | Brucella canis ATCC 23365 |
| 122 | 367931 | 368089 | - | NC_004310.3 | Brucella suis 1330 |
| 123 | 390322 | 390480 | - | NC_009505.1 | Brucella ovis ATCC 25840 |
| 124 | 369614 | 369772 | - | NC_013119.1 | Brucella microti CCM 4915 |
| 125 | 1614364 | 1614522 | + | NC_003317.1 | Brucella melitensis bv. 1 str. 16M |
| 126 | 386072 | 386230 | - | NC_007618.1 | Brucella abortus 2308 |
| 127 | 195362 | 195520 | + | NZ_LT605585.1 | Brucella inopinata |
| 128 | 3453235 | 3453378 | - | NZ_CP061205.1 | Kordiimonas pumila |
| 129 | 383171 | 383359 | - | NZ_CP004388.1 | Thalassospira xiamenensis M-5 = DSM 17429 |
| 130 | 1755462 | 1755620 | + | NZ_CP014327.1 | Halocynthiibacter arcticus |
| 131 | 3296447 | 3296608 | - | NZ_CP053562.1 | Thioclava electrotropha |
| 132 | 74663 | 74803 | + | NC_014013.1 | Sphingobium japonicum UT26S |
| 133 | 154942 | 155082 | + | NZ_CP060036.1 | Sphingobium fuliginis |
| 134 | 1967591 | 1967749 | - | NZ_CP065915.1 | Pelagovum pacificum |
| 135 | 3557624 | 3557785 | - | NC_015730.1 | Roseobacter litoralis Och 149 |
| 136 | 575475 | 575636 | + | NZ_CP020083.1 | Blastomonas fulva |
| 137 | 1179756 | 1179914 | + | NZ_CP015421.1 | Rhodovulum sulfidophilum |
| 138 | 2823320 | 2823478 | - | NZ_CP032125.1 | Profundibacter amoris |
| 139 | 2039091 | 2039249 | + | NZ_CP039964.1 | Pseudorhodobacter turbinis |
| 140 | 1757465 | 1757620 | - | NC_008048.1 | Sphingopyxis alaskensis RB2256 |
| 141 | 3396510 | 3396671 | + | NZ_CP027407.1 | Roseobacter denitrificans |
| 142 | 1064838 | 1064999 | + | NZ_CP023449.1 | Rhizorhabdus dicambivorans |
| 143 | 121213 | 121371 | - | NZ_CP024422.1 | Paracoccus yeei |
| 144 | 576406 | 576564 | - | NZ_CP030239.1 | Paracoccus mutanolyticus |
| 145 | 691774 | 691932 | - | NZ_CP010855.1 | Marinovum algicola DG 898 |
| 146 | 3719758 | 3719916 | - | NZ_CP033219.1 | Parasedimentitalea marina |
| 147 | 611520 | 611678 | - | NZ_CP004372.1 | Roseibacterium elongatum DSM 19469 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP059896.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00122.22 | 0.99 | 135 | -3 | same-strand | E1-E2 ATPase |
| 2 | PF00702.28 | 0.99 | 136 | -3.0 | same-strand | haloacid dehalogenase-like hydrolase |
| 3 | PF05751.13 | 0.95 | 130 | 2231 | same-strand | FixH |
| 4 | PF13746.8 | 0.88 | 121 | 2749.0 | same-strand | 4Fe-4S dicluster domain |
| 5 | PF11614.10 | 0.94 | 129 | 2720.5 | same-strand | IG-like fold at C-terminal of FixG, putative oxidoreductase |
| 6 | PF13183.8 | 0.77 | 106 | 2749 | same-strand | 4Fe-4S dicluster domain |
| 7 | PF13534.8 | 0.77 | 106 | 2749 | same-strand | 4Fe-4S dicluster domain |
| 8 | PF12838.9 | 0.77 | 105 | 2747.5 | same-strand | 4Fe-4S dicluster domain |
| 9 | PF13187.8 | 0.75 | 103 | 2747.5 | same-strand | 4Fe-4S dicluster domain |
| 10 | PF13442.8 | 0.8 | 110 | 4344 | same-strand | Cytochrome C oxidase, cbb3-type, subunit III |
| 11 | PF14715.8 | 0.8 | 110 | 4366.5 | same-strand | N-terminal domain of cytochrome oxidase-cbb3, FixP |
| 12 | PF00034.23 | 0.8 | 110 | 4365 | same-strand | Cytochrome c |
| 13 | PF05545.13 | 0.66 | 91 | 5171 | same-strand | Cbb3-type cytochrome oxidase component FixQ |
| 14 | PF00403.28 | 0.87 | 119 | -3.0 | same-strand | Heavy-metal-associated domain |
++ More..