Protein Information |
Information Type | Description |
---|---|
Protein name | Bacteriocin UviB |
NCBI Accession ID | M32882.1 |
Organism | Clostridium perfringens |
Left | 7939 |
Right | 8133 |
Strand | + |
Nucleotide Sequence | ATGGATAGTGAATTATTTAAGTTAATGGCAACACAAGGAGCCTTTGCAATATTATTTTCGTATTTATTGTTTTATGTTTTAAAAGAGAATAGTAAAAGAGAAGATAAGTATCAAAATATAATAGAGGAGCTTACAGAATTATTGCCAAAAATAAAAGAAGATGTAGAAGATATAAAAGAAAAACTTAATAAATAG |
Sequence | MDSELFKLMATQGAFAILFSYLLFYVLKENSKREDKYQNIIEELTELLPKIKEDVEDIKEKLNK |
Source of smORF | Swiss-Prot |
Function | May have a role in bacteriocin secretion or immunity. |
Pubmed ID | 2901768 2460717 |
Domain | CDD:402508 |
Functional Category | Antimicrobial |
Uniprot ID | P15936 |
ORF Length (Amino Acid) | 64 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 3188367 | 3188561 | + | NZ_CP071376.1 | Clostridium gasigenes |
2 | 1590757 | 1590960 | + | NZ_CP028842.1 | Clostridium botulinum |
3 | 2165837 | 2166040 | - | NZ_LR590481.1 | Hathewaya histolytica |
4 | 1927035 | 1927238 | + | NZ_CP020559.1 | Clostridium formicaceticum |
5 | 1693926 | 1694129 | + | NZ_CP020559.1 | Clostridium formicaceticum |
6 | 1659259 | 1659462 | + | NZ_CP009687.1 | Clostridium aceticum |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF01520.20 | 1.0 | 5 | 45.5 | same-strand | N-acetylmuramoyl-L-alanine amidase |