Result : P15281
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Stage III sporulation protein D (14 kDa transcription factor) |
| NCBI Accession ID | X15520.1 |
| Organism | Bacillus subtilis (strain 168) |
| Left | 235 |
| Right | 516 |
| Strand | + |
| Nucleotide Sequence | GTGCACGATTACATCAAAGAGCGAACAATCAAGATAGGGAAGTACATCGTGGAGACAAAGAAAACCGTTCGTGTCATTGCGAAGGAATTTGGTGTTTCCAAAAGTACAGTACACAAGGATTTAACAGAGCGTCTGCCTGAAATTAACCCCGACTTGGCAAACGAAGTGAAAGAAATACTCGATTATCATAAATCCATCAGGCATTTAAGAGGAGGAGAAGCGACAAAGCTCAAATATAAAAAAGATGAAATTCTCGAAGGAGAGCCTGTTCAGCAATCGTAA |
| Sequence | MHDYIKERTIKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTERLPEINPDLANEVKEILDYHKSIRHLRGGEATKLKYKKDEILEGEPVQQS |
| Source of smORF | Swiss-Prot |
| Function | This protein regulates the transcription of sigK, which encodes mother cell chamber RNA polymerase sigma-factor (sigma K). |
| Pubmed ID | 2514119 2112673 9353933 9384377 2492118 |
| Domain | CDD:419869 |
| Functional Category | DNA-binding |
| Uniprot ID | P15281 |
| ORF Length (Amino Acid) | 93 |
++ More..
| Conservation Analysis |
No. of Species: 239
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3569448 | 3569729 | - | NZ_CP048852.1 | Bacillus tequilensis |
| 2 | 3569815 | 3570096 | - | NZ_CP034943.1 | Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499 |
| 3 | 3748421 | 3748702 | - | NC_000964.3 | Bacillus subtilis subsp. subtilis str. 168 |
| 4 | 3626754 | 3627035 | - | NZ_CP013984.1 | Bacillus inaquosorum |
| 5 | 436086 | 436367 | + | NZ_CP011937.1 | Bacillus velezensis |
| 6 | 3609864 | 3610145 | - | NZ_CP053376.1 | Bacillus amyloliquefaciens |
| 7 | 3615277 | 3615558 | - | NZ_CP033052.1 | Bacillus vallismortis |
| 8 | 3552428 | 3552709 | - | NZ_CP051464.1 | Bacillus mojavensis |
| 9 | 2493435 | 2493716 | + | NZ_CP029364.1 | Bacillus halotolerans |
| 10 | 2053176 | 2053454 | + | NZ_CP017786.1 | Bacillus xiamenensis |
| 11 | 3302184 | 3302462 | - | NZ_CP011150.1 | Bacillus altitudinis |
| 12 | 1995873 | 1996151 | + | NZ_CP043404.1 | Bacillus safensis |
| 13 | 4134405 | 4134680 | - | NZ_LT603683.1 | Bacillus glycinifermentans |
| 14 | 3701012 | 3701287 | - | NC_006270.3 | Bacillus licheniformis DSM 13 = ATCC 14580 |
| 15 | 3904915 | 3905190 | - | NZ_CP023665.1 | Bacillus paralicheniformis |
| 16 | 185320 | 185595 | + | NZ_CP016020.1 | Bacillus weihaiensis |
| 17 | 4444718 | 4444990 | - | NC_022524.1 | Bacillus infantis NRRL B-14911 |
| 18 | 4896279 | 4896551 | - | NZ_CP053989.1 | Niallia circulans |
| 19 | 4613257 | 4613529 | - | NZ_CP042593.1 | Bacillus dafuensis |
| 20 | 2212185 | 2212457 | + | NZ_CP041305.1 | Cytobacillus ciccensis |
| 21 | 806256 | 806531 | - | NZ_CP017703.1 | Aeribacillus pallidus |
| 22 | 4882381 | 4882644 | - | NZ_CP024035.1 | Priestia aryabhattai |
| 23 | 3893568 | 3893840 | - | NZ_LS483476.1 | Lederbergia lentus |
| 24 | 3624338 | 3624625 | - | NC_013791.2 | Alkalihalobacillus pseudofirmus OF4 |
| 25 | 2211938 | 2212210 | - | NZ_CP030926.1 | Peribacillus butanolivorans |
| 26 | 2796408 | 2796680 | + | NZ_CP017704.1 | Peribacillus simplex NBRC 15720 = DSM 1321 |
| 27 | 3861747 | 3862031 | - | NC_002570.2 | Alkalihalobacillus halodurans C-125 |
| 28 | 5034145 | 5034417 | - | NZ_CP064875.1 | Bacillus toyonensis |
| 29 | 137776 | 138048 | + | NZ_CP040336.1 | Bacillus luti |
| 30 | 5013346 | 5013618 | - | NC_007530.2 | Bacillus anthracis str. 'Ames Ancestor' |
| 31 | 5237546 | 5237818 | - | NZ_CP032365.1 | Bacillus wiedmannii |
| 32 | 4002876 | 4003139 | - | NZ_CP065425.1 | Heyndrickxia vini |
| 33 | 5200071 | 5200343 | - | NC_011725.1 | Bacillus cereus B4264 |
| 34 | 3755386 | 3755661 | - | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 35 | 3856667 | 3856939 | - | NZ_CP024109.1 | Bacillus cytotoxicus |
| 36 | 382051 | 382308 | + | NZ_CP015438.1 | Anoxybacillus amylolyticus |
| 37 | 1122755 | 1123063 | - | NZ_CP021434.1 | Tumebacillus avium |
| 38 | 1972355 | 1972621 | - | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 39 | 2973005 | 2973274 | + | NZ_CP008876.1 | Terribacillus goriensis |
| 40 | 2950403 | 2950660 | - | NZ_CP064060.1 | Anoxybacillus caldiproteolyticus |
| 41 | 4360302 | 4360586 | - | NC_014829.1 | Evansella cellulosilytica DSM 2522 |
| 42 | 3913042 | 3913308 | - | NZ_CP015378.1 | Fictibacillus phosphorivorans |
| 43 | 3084410 | 3084682 | + | NZ_CP068053.1 | Peribacillus psychrosaccharolyticus |
| 44 | 3467688 | 3467978 | - | NZ_CP019699.1 | Novibacillus thermophilus |
| 45 | 500098 | 500370 | + | NZ_AP021853.1 | Sporolactobacillus terrae |
| 46 | 1239755 | 1240039 | - | NZ_CP063356.1 | Anaerobacillus isosaccharinicus |
| 47 | 401728 | 402036 | + | NZ_CP022657.1 | Tumebacillus algifaecis |
| 48 | 3187321 | 3187590 | - | NZ_CP012024.1 | Bacillus smithii |
| 49 | 2416197 | 2416469 | + | NZ_CP022983.1 | Cytobacillus kochii |
| 50 | 3223692 | 3223979 | - | NZ_CP029797.1 | Paraliobacillus zengyii |
| 51 | 1029517 | 1029804 | + | NZ_CP026363.1 | Brevibacillus agri |
| 52 | 6093064 | 6093348 | - | NZ_LR134338.1 | Brevibacillus brevis |
| 53 | 75807 | 76097 | + | NZ_CP034235.1 | Paenibacillus psychroresistens |
| 54 | 2627030 | 2627293 | - | NZ_CP012152.1 | Anoxybacillus gonensis |
| 55 | 3396616 | 3396909 | - | NZ_CP017962.1 | Virgibacillus halodenitrificans |
| 56 | 2022313 | 2022582 | - | NZ_CP031092.1 | Salicibibacter kimchii |
| 57 | 3198559 | 3198849 | - | NZ_CP048104.1 | Kroppenstedtia pulmonis |
| 58 | 2539245 | 2539508 | - | NZ_CP061470.1 | Geobacillus zalihae |
| 59 | 4322261 | 4322524 | - | NZ_CP018866.1 | Sutcliffiella cohnii |
| 60 | 3404462 | 3404725 | + | NZ_CP014342.1 | Geobacillus subterraneus |
| 61 | 595712 | 595999 | + | NZ_AP017312.1 | Aneurinibacillus soli |
| 62 | 441337 | 441600 | + | NZ_CP018058.1 | Geobacillus thermocatenulatus |
| 63 | 3525344 | 3525625 | - | NC_017668.1 | Halobacillus halophilus DSM 2266 |
| 64 | 2561771 | 2562034 | + | NZ_CP061472.1 | Geobacillus thermoleovorans |
| 65 | 3377831 | 3378094 | - | NC_006510.1 | Geobacillus kaustophilus HTA426 |
| 66 | 628452 | 628715 | + | NZ_CP070511.1 | Parageobacillus toebii |
| 67 | 784611 | 784874 | + | NZ_CP016622.1 | Parageobacillus thermoglucosidasius |
| 68 | 3429033 | 3429320 | - | NZ_CP048103.1 | Kroppenstedtia eburnea |
| 69 | 1532741 | 1533028 | + | NZ_CP043611.1 | Paenibacillus antarcticus |
| 70 | 66704 | 66994 | + | NZ_CP019659.1 | Paenibacillus larvae subsp. larvae |
| 71 | 2436739 | 2437005 | + | NZ_CP035485.1 | Salicibibacter halophilus |
| 72 | 3835219 | 3835506 | - | NZ_CP033433.1 | Cohnella candidum |
| 73 | 4893060 | 4893347 | - | NZ_CP004078.1 | Paenibacillus sabinae T27 |
| 74 | 3812324 | 3812608 | - | NZ_CP014167.1 | Paenibacillus yonginensis |
| 75 | 407105 | 407392 | - | NZ_CP034437.1 | Paenibacillus albus |
| 76 | 6483361 | 6483648 | - | NZ_CP048209.1 | Paenibacillus lycopersici |
| 77 | 4062752 | 4063039 | + | NZ_CP048286.1 | Paenibacillus rhizovicinus |
| 78 | 5886793 | 5887080 | + | NZ_AP019308.1 | Paenibacillus baekrokdamisoli |
| 79 | 3544696 | 3544983 | + | NZ_CP035492.1 | Paenibacillus protaetiae |
| 80 | 3559520 | 3559801 | - | NZ_CP024848.1 | Oceanobacillus zhaokaii |
| 81 | 5287032 | 5287319 | - | NZ_CP009286.1 | Paenibacillus stellifer |
| 82 | 5535638 | 5535925 | - | NZ_CP009288.1 | Paenibacillus durus |
| 83 | 3125722 | 3126009 | - | NZ_CP054614.1 | Paenibacillus barcinonensis |
| 84 | 1750816 | 1751103 | - | NZ_CP045298.1 | Paenibacillus brasilensis |
| 85 | 451594 | 451881 | + | NZ_CP020028.1 | Paenibacillus kribbensis |
| 86 | 1000941 | 1001228 | - | NC_016641.1 | Paenibacillus terrae HPL-003 |
| 87 | 844315 | 844596 | + | NZ_CP020772.1 | Halobacillus mangrovi |
| 88 | 4075331 | 4075621 | - | NC_019897.1 | Thermobacillus composti KWC4 |
| 89 | 1419967 | 1420251 | + | NZ_CP034248.1 | Paenibacillus lentus |
| 90 | 5937140 | 5937424 | - | NZ_CP034346.1 | Paenibacillus lutimineralis |
| 91 | 4236024 | 4236311 | + | NZ_CP045295.1 | Paenibacillus cellulositrophicus |
| 92 | 3747275 | 3747559 | + | NZ_CP016809.1 | Paenibacillus ihbetae |
| 93 | 6382595 | 6382882 | - | NZ_CP009428.1 | Paenibacillus odorifer |
| 94 | 1393447 | 1393734 | - | NZ_CP048429.1 | Paenibacillus jilunlii |
| 95 | 6634471 | 6634758 | - | NZ_CP009287.1 | Paenibacillus graminis |
| 96 | 7354925 | 7355212 | - | NZ_LN831776.1 | Paenibacillus riograndensis SBR5 |
| 97 | 7621467 | 7621754 | - | NZ_CP009285.1 | Paenibacillus borealis |
| 98 | 6485565 | 6485852 | - | NZ_CP021780.1 | Paenibacillus donghaensis |
| 99 | 545552 | 545842 | + | NZ_CP026520.1 | Paenibacillus chitinolyticus |
| 100 | 4209431 | 4209718 | - | NZ_CP013652.1 | Paenibacillus naphthalenovorans |
| 101 | 70464 | 70751 | + | NC_017672.3 | Paenibacillus mucilaginosus K02 |
| 102 | 2568879 | 2569172 | - | NZ_CP034118.1 | Staphylospora marina |
| 103 | 3132669 | 3132956 | - | NZ_CP041666.1 | Radiobacillus deserti |
| 104 | 3232851 | 3233138 | - | NZ_CP024955.1 | Kyrpidia spormannii |
| 105 | 3278805 | 3279092 | - | NC_014098.1 | Kyrpidia tusciae DSM 2912 |
| 106 | 3067161 | 3067445 | - | NC_004193.1 | Oceanobacillus iheyensis HTE831 |
| 107 | 6043061 | 6043348 | + | NZ_CP045293.1 | Paenibacillus guangzhouensis |
| 108 | 2142551 | 2142811 | - | NC_018704.1 | Amphibacillus xylanus NBRC 15112 |
| 109 | 1831150 | 1831434 | - | NZ_CP017705.1 | Brevibacillus laterosporus DSM 25 |
| 110 | 994638 | 994925 | - | NZ_CP018622.1 | Virgibacillus dokdonensis |
| 111 | 3146106 | 3146390 | + | NZ_CP013862.1 | Lentibacillus amyloliquefaciens |
| 112 | 1813280 | 1813564 | - | NZ_CP011058.1 | Paenibacillus beijingensis |
| 113 | 357486 | 357764 | + | NZ_CP039710.1 | Thermoactinomyces vulgaris |
| 114 | 1365453 | 1365725 | - | NZ_CP068595.1 | Paenibacillus sonchi |
| 115 | 2826014 | 2826277 | - | NZ_CP009416.1 | Jeotgalibacillus malaysiensis |
| 116 | 2513687 | 2513941 | + | NZ_CP012395.1 | Clostridium autoethanogenum DSM 10061 |
| 117 | 254430 | 254684 | + | NC_014328.1 | Clostridium ljungdahlii DSM 13528 |
| 118 | 3653536 | 3653790 | - | NC_011837.1 | Clostridium kluyveri NBRC 12016 |
| 119 | 196868 | 197122 | + | NZ_CP028842.1 | Clostridium botulinum |
| 120 | 195909 | 196163 | + | NZ_CP011663.1 | Clostridium sporogenes |
| 121 | 4672221 | 4672481 | - | NC_021184.1 | Desulfoscipio gibsoniae DSM 7213 |
| 122 | 204249 | 204503 | + | NZ_CP032416.1 | Clostridium fermenticellae |
| 123 | 2208923 | 2209177 | - | NC_008593.1 | Clostridium novyi NT |
| 124 | 242690 | 242959 | + | NZ_CP009687.1 | Clostridium aceticum |
| 125 | 5680801 | 5681055 | + | NZ_CP020953.1 | Clostridium drakei |
| 126 | 4830096 | 4830350 | + | NZ_CP011803.1 | Clostridium carboxidivorans P7 |
| 127 | 4224008 | 4224262 | - | NZ_CP009933.1 | Clostridium scatologenes |
| 128 | 725297 | 725572 | + | NZ_CP031223.1 | Psychrobacillus glaciei |
| 129 | 2248984 | 2249235 | - | NZ_LR590481.1 | Hathewaya histolytica |
| 130 | 227032 | 227301 | + | NZ_CP020559.1 | Clostridium formicaceticum |
| 131 | 2717413 | 2717664 | - | NC_008261.1 | Clostridium perfringens ATCC 13124 |
| 132 | 175716 | 175970 | + | NZ_CP014170.1 | Clostridium tyrobutyricum |
| 133 | 261873 | 262127 | + | NZ_CP015756.1 | Clostridium estertheticum subsp. estertheticum |
| 134 | 170171 | 170425 | + | NZ_LT906477.1 | Clostridium cochlearium |
| 135 | 2313247 | 2313474 | + | NZ_CP017269.1 | Geosporobacter ferrireducens |
| 136 | 591285 | 591545 | + | NZ_CP006837.1 | Lysinibacillus varians |
| 137 | 4077021 | 4077281 | - | NZ_CP019980.1 | Lysinibacillus sphaericus |
| 138 | 4239256 | 4239516 | - | NZ_CP010820.1 | Lysinibacillus fusiformis |
| 139 | 3069030 | 3069347 | - | NC_010718.1 | Natranaerobius thermophilus JW/NM-WN-LF |
| 140 | 3819631 | 3819885 | - | NZ_CP013019.1 | Clostridium pasteurianum |
| 141 | 4317905 | 4318171 | - | NZ_CP013019.1 | Clostridium pasteurianum |
| 142 | 174720 | 174983 | + | NC_003869.1 | Caldanaerobacter subterraneus subsp. tengcongensis MB4 |
| 143 | 2266464 | 2266715 | - | NC_015555.1 | Thermoanaerobacterium xylanolyticum LX-11 |
| 144 | 3739722 | 3739976 | - | NC_014393.1 | Clostridium cellulovorans 743B |
| 145 | 267563 | 267814 | + | NZ_CP047602.1 | Thermoanaerobacterium aotearoense |
| 146 | 877570 | 877821 | - | NC_010337.2 | Heliomicrobium modesticaldum Ice1 |
| 147 | 2026695 | 2026949 | - | NC_014377.1 | Thermosediminibacter oceani DSM 16646 |
| 148 | 3255448 | 3255702 | - | NZ_CP030775.1 | Clostridium butyricum |
| 149 | 544609 | 544863 | + | NC_022571.1 | Clostridium saccharobutylicum DSM 13864 |
| 150 | 2479950 | 2480222 | + | NZ_CP015108.1 | Sporosarcina ureae |
| 151 | 1668794 | 1669048 | - | NZ_CP068564.1 | Keratinibaculum paraultunense |
| 152 | 2149938 | 2150198 | - | NC_014964.1 | Thermoanaerobacter brockii subsp. finnii Ako-1 |
| 153 | 189062 | 189322 | + | NC_015958.1 | Thermoanaerobacter wiegelii Rt8.B1 |
| 154 | 204365 | 204625 | + | NC_014209.1 | Thermoanaerobacter mathranii subsp. mathranii str. A3 |
| 155 | 158847 | 159107 | + | NC_013921.1 | Thermoanaerobacter italicus Ab9 |
| 156 | 3149762 | 3150016 | - | NZ_CP040924.1 | Clostridium thermarum |
| 157 | 2995674 | 2995928 | - | NC_015687.1 | Clostridium acetobutylicum DSM 1731 |
| 158 | 2486379 | 2486633 | - | NZ_HG917868.1 | Clostridium bornimense |
| 159 | 4504170 | 4504424 | - | NZ_CP014176.1 | Clostridium argentinense |
| 160 | 3079114 | 3079374 | - | NZ_CP014176.1 | Clostridium argentinense |
| 161 | 2524764 | 2525015 | - | NC_014410.1 | Thermoanaerobacterium thermosaccharolyticum DSM 571 |
| 162 | 1902233 | 1902493 | + | NZ_LT990039.1 | Massilistercora timonensis |
| 163 | 215995 | 216252 | + | NC_018664.1 | Gottschalkia acidurici 9a |
| 164 | 402814 | 403077 | + | NC_009633.1 | Alkaliphilus metalliredigens QYMF |
| 165 | 3886185 | 3886445 | - | NZ_CP019870.1 | Clostridioides difficile |
| 166 | 2429351 | 2429608 | - | NZ_CP017237.1 | Moorella thermoacetica |
| 167 | 174882 | 175142 | + | NZ_CP009170.1 | Thermoanaerobacter kivui |
| 168 | 2755873 | 2756103 | - | NC_009922.1 | Alkaliphilus oremlandii OhILAs |
| 169 | 3180409 | 3180660 | - | NZ_CP019698.1 | Desulfotomaculum ferrireducens |
| 170 | 3751956 | 3752207 | - | NC_015589.1 | Desulfotomaculum ruminis DSM 2154 |
| 171 | 4337719 | 4337970 | - | NC_013216.1 | Desulfofarcimen acetoxidans DSM 771 |
| 172 | 534688 | 534939 | + | NZ_CP014204.2 | Clostridium baratii |
| 173 | 75365 | 75649 | + | NC_013385.1 | Ammonifex degensii KC4 |
| 174 | 2301533 | 2301790 | - | NC_014220.1 | Syntrophothermus lipocalidus DSM 12680 |
| 175 | 2737370 | 2737618 | - | NC_018870.1 | Thermacetogenium phaeum DSM 12270 |
| 176 | 3427156 | 3427407 | - | NC_009253.1 | Desulfotomaculum reducens MI-1 |
| 177 | 464818 | 465072 | + | NZ_CP017253.2 | Clostridium taeniosporum |
| 178 | 2507210 | 2507461 | - | NZ_CP017253.2 | Clostridium taeniosporum |
| 179 | 3221379 | 3221660 | - | NZ_CP017560.1 | Sporosarcina ureilytica |
| 180 | 2391457 | 2391735 | - | NZ_CP038012.1 | Sporosarcina pasteurii |
| 181 | 4151966 | 4152235 | - | NZ_CP014616.1 | Sporosarcina psychrophila |
| 182 | 715854 | 716105 | - | NZ_CP071376.1 | Clostridium gasigenes |
| 183 | 335973 | 336224 | + | NC_016627.1 | Acetivibrio clariflavus DSM 19732 |
| 184 | 1902382 | 1902642 | - | NC_011899.1 | Halothermothrix orenii H 168 |
| 185 | 2618286 | 2618549 | - | NZ_LT635479.1 | Lachnoclostridium phocaeense |
| 186 | 3306433 | 3306693 | - | NC_015172.1 | Syntrophobotulus glycolicus DSM 8271 |
| 187 | 2428575 | 2428826 | - | NZ_CP027286.1 | Clostridium chauvoei |
| 188 | 2236884 | 2237135 | + | NZ_CP023671.1 | Clostridium septicum |
| 189 | 55189 | 55443 | + | NZ_CP021850.1 | Pseudoclostridium thermosuccinogenes |
| 190 | 1442670 | 1442948 | + | NZ_CP036170.1 | [Clostridium] scindens ATCC 35704 |
| 191 | 1518567 | 1518821 | + | NZ_CP059066.1 | Koleobacter methoxysyntrophicus |
| 192 | 697652 | 697906 | + | NC_020291.1 | Clostridium saccharoperbutylacetonicum N1-4(HMT) |
| 193 | 227309 | 227572 | + | NZ_CP016502.1 | Acetivibrio thermocellus DSM 2360 |
| 194 | 2162287 | 2162523 | - | NC_015519.1 | Tepidanaerobacter acetatoxydans Re1 |
| 195 | 989050 | 989298 | + | NZ_CP045875.1 | Heliorestis convoluta |
| 196 | 2723398 | 2723655 | + | NZ_CP048649.1 | Aminipila butyrica |
| 197 | 3423851 | 3424117 | - | NZ_CP014150.1 | Paeniclostridium sordellii |
| 198 | 2766185 | 2766460 | - | NZ_CP040058.1 | Anaerostipes rhamnosivorans |
| 199 | 904666 | 904941 | + | NZ_CP036345.1 | Anaerostipes caccae L1-92 |
| 200 | 2710004 | 2710252 | - | NC_008346.1 | Syntrophomonas wolfei subsp. wolfei str. Goettingen G311 |
| 201 | 2466196 | 2466477 | - | NC_019978.1 | Halobacteroides halobius DSM 5150 |
| 202 | 293067 | 293327 | + | NZ_LN879430.1 | Herbinix luporum |
| 203 | 3090338 | 3090586 | - | NZ_CP007032.1 | Desulfitobacterium metallireducens DSM 15288 |
| 204 | 197150 | 197416 | + | NC_014831.1 | Thermaerobacter marianensis DSM 12885 |
| 205 | 2410196 | 2410453 | + | NZ_AP018449.1 | Methylomusa anaerophila |
| 206 | 483502 | 483756 | + | NZ_CP043998.1 | Clostridium diolis |
| 207 | 2766212 | 2766484 | - | NZ_CP038015.1 | Paenisporosarcina antarctica |
| 208 | 3516265 | 3516513 | - | NC_019903.1 | Desulfitobacterium dichloroeliminans LMG P-21439 |
| 209 | 2573907 | 2574137 | - | NZ_CP016379.1 | Anoxybacter fermentans |
| 210 | 2841324 | 2841551 | - | NZ_LR699011.1 | Roseburia hominis |
| 211 | 4155399 | 4155647 | - | NC_018017.1 | Desulfitobacterium dehalogenans ATCC 51507 |
| 212 | 5087949 | 5088197 | - | NC_011830.1 | Desulfitobacterium hafniense DCB-2 |
| 213 | 1954318 | 1954584 | - | NZ_CP027002.1 | [Ruminococcus] gnavus ATCC 29149 |
| 214 | 122663 | 122911 | + | NC_006177.1 | Symbiobacterium thermophilum IAM 14863 |
| 215 | 371331 | 371585 | - | NC_015520.1 | Mahella australiensis 50-1 BON |
| 216 | 3926583 | 3926837 | - | NC_015275.1 | Cellulosilyticum lentocellum DSM 5427 |
| 217 | 2449044 | 2449301 | - | NZ_CP045798.1 | Thermoanaerosceptrum fracticalcis |
| 218 | 665180 | 665407 | + | NZ_LR027880.1 | Roseburia intestinalis L1-82 |
| 219 | 3264125 | 3264385 | - | NZ_AP014924.1 | Limnochorda pilosa |
| 220 | 2326842 | 2327102 | - | NC_014378.1 | Acetohalobium arabaticum DSM 5501 |
| 221 | 2264279 | 2264533 | - | NC_007503.1 | Carboxydothermus hydrogenoformans Z-2901 |
| 222 | 588658 | 588906 | + | NZ_CP061336.1 | Ruminiclostridium herbifermentans |
| 223 | 5750755 | 5751003 | - | NC_016584.1 | Desulfosporosinus orientis DSM 765 |
| 224 | 202427 | 202684 | - | NC_012778.1 | [Eubacterium] eligens ATCC 27750 |
| 225 | 4829905 | 4830153 | - | NC_018068.1 | Desulfosporosinus acidiphilus SJ4 |
| 226 | 2419618 | 2419869 | - | NZ_CP016786.1 | Clostridium isatidis |
| 227 | 4764801 | 4765049 | - | NC_018515.1 | Desulfosporosinus meridiei DSM 13257 |
| 228 | 2940854 | 2941108 | - | NZ_CP046996.1 | Dehalobacter restrictus |
| 229 | 3523214 | 3523513 | - | NZ_CP025197.1 | Acetivibrio saccincola |
| 230 | 87695 | 87958 | + | NC_020134.1 | Thermoclostridium stercorarium subsp. stercorarium DSM 8532 |
| 231 | 939782 | 940048 | - | NZ_HF545616.1 | Ruminococcus bicirculans |
| 232 | 258907 | 259182 | + | NC_010001.1 | Lachnoclostridium phytofermentans ISDg |
| 233 | 3680075 | 3680335 | - | NZ_CP036259.1 | Sporomusa termitida |
| 234 | 671174 | 671431 | + | NZ_CP039126.1 | Blautia producta |
| 235 | 406205 | 406477 | + | NC_014376.1 | [Clostridium] saccharolyticum WM1 |
| 236 | 637648 | 637923 | + | NZ_CP022464.2 | Enterocloster bolteae |
| 237 | 5121837 | 5122097 | - | NZ_AP023367.1 | Anaerocolumna cellulosilytica |
| 238 | 748385 | 748627 | + | NC_016048.1 | Oscillibacter valericigenes Sjm18-20 |
| 239 | 25277 | 25534 | + | NZ_CP014223.1 | Anaerotignum propionicum DSM 1682 |
| 240 | 1245493 | 1245729 | + | NZ_CP034413.2 | Dysosmobacter welbionis |
| 241 | 3969747 | 3969998 | + | NZ_CP048436.1 | Flavonifractor plautii |
| 242 | 924154 | 924414 | - | NZ_CP048000.1 | Anaerocolumna sedimenticola |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP053989.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF06429.15 | 0.62 | 149 | 1677.0 | same-strand | Flagellar basal body rod FlgEFG protein C-terminal |
| 2 | PF00460.22 | 0.61 | 146 | 1598.5 | same-strand | Flagella basal body rod protein |
| 3 | PF06723.15 | 0.86 | 206 | 162.0 | same-strand | MreB/Mbl protein |
| 4 | PF14450.8 | 0.85 | 203 | 163 | same-strand | Cell division protein FtsA |
| 5 | PF01551.24 | 0.75 | 180 | 201 | same-strand | Peptidase family M23 |
| 6 | PF08486.12 | 0.74 | 178 | 1101.0 | same-strand | Stage II sporulation protein |
| 7 | PF00275.22 | 0.61 | 145 | 2469 | same-strand | EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) |
++ More..