Result : P15033

Protein Information

• Protein name: Protein RacC
• NCBI Accession ID: M24905.1
• Organism: Escherichia coli (strain K12)
• Left: 116
• Right: 391
• Strand: +
• Nucleotide Sequence: ATGATTACCAATTATGAAGCCACTGTTGTAACTACCGATGACATTGTTCACGAGGTGAATCTGGAAGGAAAGCGCATTGGCTACGTAATTAAAACAGAAAATAAAGAAACCCCATTCACTGTGGTTGATATCGATGGTCCATCAGGCAACGTAAAAACACTTGATGAAGGTGTCAAAAAAATGTGCCTGGTGCATATCGGAAAGAATCTGCCCGCAGAAAAAAAAGCCGAATTTCTGGCAACTCTAATTGCAATGAAATTAAAAGGTGAAATCTGA
• Sequence: MITNYEATVVTTDDIVHEVNLEGKRIGYVIKTENKETPFTVVDIDGPSGNVKTLDEGVKKMCLVHIGKNLPAEKKAEFLATLIAMKLKGEI
• Source of smORF: Swiss-Prot
• Function: The ORF matches to the profile of PRK09790. Profile Description: hypothetical protein; Reviewed
• Pubmed ID: 2649487 9097039 9278503 16738553
• Domain: CDD:182076
• Functional Category: Others
• Uniprot ID: P15033
• ORF Length (Amino Acid): 91

Conservation Analysis

No. of Species: 3

Sr.No.	Left Position	Right Position	Strand	NCBI Accession id	Species Name
1	2340273	2340548	+	NZ_LR134340.1	Escherichia marmotae
2	1417488	1417763	-	NC_000913.3	Escherichia coli str. K-12 substr. MG1655
3	1927096	1927371	-	NC_002695.2	Escherichia coli O157:H7 str. Sakai
4	1416561	1416836	-	NC_004337.2	Shigella flexneri 2a str. 301

Neighborhood Conservation Analysis

^* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
^* 'Small ORF' represents the entry/query analyzed.
^* Image generated using 'gggenes'(R-Package).

Neighborhood Representative Chosen(Species): NZ_LR134340.1

Sr.No.	Domain	Co-occurrence Frequency	No. of species in which domain occurs with smORF	Median distance b/w smORF and domain bearing ORFs	Orientation relative to smORF	PFAM Information
1	PF07151.14	0.67	2	1393	same-strand	Protein of unknown function (DUF1391)
2	PF14163.8	0.67	2	785	opposite-strand	Super-infection exclusion protein B
3	PF06630.13	0.67	2	102	same-strand	Enterobacterial exodeoxyribonuclease VIII
4	PF12684.9	0.67	2	102	same-strand	PDDEXK-like domain of unknown function (DUF3799)
5	PF03837.16	0.67	2	2695	same-strand	RecT family
6	PF06688.13	0.67	2	3748	same-strand	Protein of unknown function (DUF1187)
7	PF06806.14	0.67	2	4036	same-strand	Putative excisionase (DUF1233)
8	PF12167.10	0.67	2	4253	same-strand	Arm DNA-binding domain
9	PF00589.24	0.67	2	4253	same-strand	Phage integrase family
10	PF14659.8	0.67	2	4253	same-strand	Phage integrase, N-terminal SAM-like domain