* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_004337.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF03797.21
|
1.0
|
2
|
755.0
|
opposite-strand
|
Autotransporter beta-domain
|
2
|
PF18883.2
|
1.0
|
2
|
1305.5
|
opposite-strand
|
Autochaperone Domain Type 1
|
3
|
PF16456.7
|
1.0
|
2
|
356.0
|
same-strand
|
YmgD protein
|
4
|
PF13441.8
|
1.0
|
2
|
62.0
|
same-strand
|
YMGG-like Gly-zipper
|
5
|
PF13488.8
|
1.0
|
2
|
62.0
|
same-strand
|
Glycine zipper
|
6
|
PF03776.16
|
1.0
|
2
|
1116.5
|
same-strand
|
Septum formation topological specificity factor MinE
|
7
|
PF13614.8
|
1.0
|
2
|
1386.5
|
same-strand
|
AAA domain
|
8
|
PF01656.25
|
1.0
|
2
|
1386.5
|
same-strand
|
CobQ/CobB/MinD/ParA nucleotide binding domain
|
9
|
PF05209.15
|
1.0
|
2
|
2222.5
|
same-strand
|
Septum formation inhibitor MinC, N-terminal domain
|
10
|
PF03775.18
|
1.0
|
2
|
2222.5
|
same-strand
|
Septum formation inhibitor MinC, C-terminal domain
|
11
|
PF05666.13
|
1.0
|
2
|
3437.5
|
opposite-strand
|
Fels-1 Prophage Protein-like
|
++ More..