* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF02901.17
|
1.0
|
3
|
4962.0
|
opposite-strand
|
Pyruvate formate lyase-like
|
2
|
PF01228.23
|
1.0
|
3
|
4962.0
|
opposite-strand
|
Glycine radical
|
3
|
PF00871.19
|
1.0
|
3
|
3720.0
|
opposite-strand
|
Acetokinase family
|
4
|
PF03222.15
|
1.0
|
3
|
2363.0
|
opposite-strand
|
Tryptophan/tyrosine permease family
|
5
|
PF00291.27
|
1.0
|
3
|
1352.0
|
opposite-strand
|
Pyridoxal-phosphate dependent enzyme
|
6
|
PF03466.22
|
1.0
|
3
|
315.0
|
opposite-strand
|
LysR substrate binding domain
|
7
|
PF00126.29
|
1.0
|
3
|
315.0
|
opposite-strand
|
Bacterial regulatory helix-turn-helix protein, lysR family
|
8
|
PF02595.17
|
0.67
|
2
|
3014
|
opposite-strand
|
Glycerate kinase family
|
9
|
PF03446.17
|
0.67
|
2
|
4256
|
opposite-strand
|
NAD binding domain of 6-phosphogluconate dehydrogenase
|
10
|
PF14833.8
|
0.67
|
2
|
4256
|
opposite-strand
|
NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
|
11
|
PF03807.19
|
0.67
|
2
|
4256
|
opposite-strand
|
NADP oxidoreductase coenzyme F420-dependent
|
++ More..