Result : A4XJV6
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | UPF0473 protein Csac_1599 |
| NCBI Accession ID | CP000679.1 |
| Organism | Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) |
| Left | 1758137 |
| Right | 1758439 |
| Strand | + |
| Nucleotide Sequence | ATGGATATGTTTGCAGACAATGTTGTAACATTAGTAGATGAGGAAGGAAGAGAGATATCATTTGAAATGCTCGATAAGGTCAATTACAATGGTAATGACTATATAGTCCTTCTTCCTTTAGAAGAGATTGAAAAGGAAGACGAAGAGGCAGAGGTCATCATACTGCGAATTGAAGATAGAGACGGAGAAGAGGTCTATGTTGGTGTAGAAGATGAGGAGGAGCTTGAAAACGTATTTGAAATCTTCCAGTCCCGCTTTGACGATGAAGACTTTGACATGTATGATGAAGAAGATGAAGAATAA |
| Sequence | MDMFADNVVTLVDEEGREISFEMLDKVNYNGNDYIVLLPLEEIEKEDEEAEVIILRIEDRDGEEVYVGVEDEEELENVFEIFQSRFDDEDFDMYDEEDEE |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl01608. Profile Description: Protein of unknown function (DUF1292). hypothetical protein; Provisional |
| Pubmed ID | |
| Domain | CDD:412983 |
| Functional Category | Others |
| Uniprot ID | A4XJV6 |
| ORF Length (Amino Acid) | 100 |
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| Conservation Analysis |
No. of Species: 13
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1697944 | 1698246 | - | NZ_CP034791.1 | Caldicellulosiruptor changbaiensis |
| 2 | 1758137 | 1758439 | + | NC_009437.1 | Caldicellulosiruptor saccharolyticus DSM 8903 |
| 3 | 1050600 | 1050899 | + | NC_014657.1 | Caldicellulosiruptor owensensis OL |
| 4 | 1611809 | 1612108 | - | NC_014652.1 | Caldicellulosiruptor hydrothermalis 108 |
| 5 | 1500663 | 1500962 | - | NC_014392.1 | Caldicellulosiruptor obsidiansis OB47 |
| 6 | 619928 | 620224 | + | NC_015949.1 | Caldicellulosiruptor lactoaceticus 6A |
| 7 | 1190393 | 1190689 | + | NC_014721.1 | Caldicellulosiruptor kristjanssonii I77R1B |
| 8 | 1716130 | 1716429 | - | NC_014720.1 | Caldicellulosiruptor kronotskyensis 2002 |
| 9 | 1243628 | 1243927 | + | NC_012034.1 | Caldicellulosiruptor bescii DSM 6725 |
| 10 | 2450617 | 2450883 | - | NZ_CP016502.1 | Acetivibrio thermocellus DSM 2360 |
| 11 | 2618033 | 2618284 | - | NC_011898.1 | Ruminiclostridium cellulolyticum H10 |
| 12 | 1389781 | 1390032 | + | NC_016627.1 | Acetivibrio clariflavus DSM 19732 |
| 13 | 548103 | 548369 | + | NZ_CP045875.1 | Heliorestis convoluta |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP034791.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00698.23 | 0.62 | 8 | 3762.5 | same-strand | Acyl transferase domain |
| 2 | PF08541.12 | 0.69 | 9 | 2758 | same-strand | 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal |
| 3 | PF08545.12 | 0.69 | 9 | 2758 | same-strand | 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III |
| 4 | PF02504.17 | 0.69 | 9 | 1750 | same-strand | Fatty acid synthesis protein |
| 5 | PF00483.25 | 0.69 | 9 | 114 | same-strand | Nucleotidyl transferase |
| 6 | PF01370.23 | 0.69 | 9 | 482 | same-strand | NAD dependent epimerase/dehydratase family |
| 7 | PF16363.7 | 0.69 | 9 | 482 | same-strand | GDP-mannose 4,6 dehydratase |
| 8 | PF01073.21 | 0.69 | 9 | 482 | same-strand | 3-beta hydroxysteroid dehydrogenase/isomerase family |
| 9 | PF02719.17 | 0.69 | 9 | 482 | same-strand | Polysaccharide biosynthesis protein |
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