Result : A4XDG6
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S18 |
| NCBI Accession ID | CP000667.1 |
| Organism | Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) |
| Left | 5142336 |
| Right | 5142617 |
| Strand | - |
| Nucleotide Sequence | ATGGCGCCGAGCGCCCGCAATCGCAAACCAGGAGCAAGGTCAATGGCCAAGGCTGCGGCACTTCGCAAGCCGAAGAAGAAAGTGAACCCGCTTGATAAGGACGGGATCACGTACATCGATTACAAGGACACTGCGCTGCTGCGCAAGTTCATCTCCGACCGCGGCAAGATTCGTGCCCGGCGAGTGACTGGCGTGACCTCGCAGCAGCAGCGGCAGATCGCCCGCGCGGTCAAGAACGCCCGCGAGATGGCGCTCTTGCCGTACACGGCGACGGCTCGCTGA |
| Sequence | MAPSARNRKPGARSMAKAAALRKPKKKVNPLDKDGITYIDYKDTALLRKFISDRGKIRARRVTGVTSQQQRQIARAVKNAREMALLPYTATAR |
| Source of smORF | Swiss-Prot |
| Function | Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit. {ECO:0000255|HAMAP-Rule:MF_00270}. |
| Pubmed ID | 17563368 |
| Domain | CDD:412341 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | A4XDG6 |
| ORF Length (Amino Acid) | 93 |
++ More..
| Conservation Analysis |
No. of Species: 248
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 5142336 | 5142617 | - | NC_009380.1 | Salinispora tropica CNB-440 |
| 2 | 7483720 | 7484001 | - | NZ_CP058322.1 | Micromonospora carbonacea |
| 3 | 3056558 | 3056839 | - | NZ_CP061725.1 | Micromonospora craniellae |
| 4 | 5506879 | 5507160 | - | NZ_CP045309.1 | Micromonospora terminaliae |
| 5 | 6986233 | 6986514 | - | NC_014391.1 | Micromonospora aurantiaca ATCC 27029 |
| 6 | 3593196 | 3593435 | + | NZ_AP022871.1 | Phytohabitans suffuscus |
| 7 | 8243683 | 8243922 | - | NZ_CP023865.1 | Actinoplanes teichomyceticus ATCC 31121 |
| 8 | 8732872 | 8733111 | - | NC_017093.1 | Actinoplanes missouriensis 431 |
| 9 | 7544528 | 7544767 | + | NZ_AP022870.1 | Phytohabitans flavus |
| 10 | 9331734 | 9331973 | - | NC_022657.1 | Actinoplanes friuliensis DSM 7358 |
| 11 | 136434 | 136673 | + | NC_013947.1 | Stackebrandtia nassauensis DSM 44728 |
| 12 | 7010357 | 7010596 | + | NZ_AP023355.1 | Actinocatenispora thailandica |
| 13 | 2141831 | 2142067 | + | NZ_CP047156.1 | Epidermidibacterium keratini |
| 14 | 8757374 | 8757610 | - | NC_014666.1 | Frankia inefficax |
| 15 | 4150393 | 4150629 | - | NC_014165.1 | Thermobispora bispora DSM 43833 |
| 16 | 246476 | 246712 | + | NZ_LS483427.1 | Arcanobacterium haemolyticum |
| 17 | 3404622 | 3404858 | - | NZ_CP051884.1 | Cellulomonas taurus |
| 18 | 2707966 | 2708202 | - | NZ_LS483423.1 | Jonesia denitrificans |
| 19 | 3494187 | 3494423 | - | NC_015671.1 | Cellulomonas gilvus ATCC 13127 |
| 20 | 1965917 | 1966153 | - | NZ_CP070228.1 | Arcanobacterium phocisimile |
| 21 | 4228786 | 4229022 | - | NC_015514.1 | Cellulomonas fimi ATCC 484 |
| 22 | 1589982 | 1590221 | - | NZ_CP007519.1 | Trueperella pyogenes |
| 23 | 3404847 | 3405083 | - | NZ_CP040887.1 | Serinicoccus chungangensis |
| 24 | 2116938 | 2117174 | + | NZ_CP014989.1 | Serinicoccus hydrothermalis |
| 25 | 1875143 | 1875379 | - | NZ_CP060713.1 | Nocardioides mesophilus |
| 26 | 11238748 | 11238984 | - | NZ_CP045572.1 | Nonomuraea nitratireducens |
| 27 | 3486768 | 3487004 | - | NZ_CP044427.1 | Ornithinimicrobium pratense |
| 28 | 10304090 | 10304326 | - | NC_013595.1 | Streptosporangium roseum DSM 43021 |
| 29 | 7454684 | 7454920 | - | NC_008278.1 | Frankia alni ACN14a |
| 30 | 553736 | 553990 | - | NC_008278.1 | Frankia alni ACN14a |
| 31 | 520611 | 520847 | + | NZ_LT906453.1 | Dermatophilus congolensis |
| 32 | 3975101 | 3975334 | + | NZ_CP022310.1 | Streptomyces calvus |
| 33 | 3587931 | 3588176 | + | NZ_CP017316.1 | Streptomyces rubrolavendulae |
| 34 | 2475775 | 2476014 | - | NC_012803.1 | Micrococcus luteus NCTC 2665 |
| 35 | 1091098 | 1091337 | - | NZ_LR134476.1 | Trueperella bialowiezensis |
| 36 | 6683844 | 6684080 | + | NZ_CP031142.1 | Saccharopolyspora pogona |
| 37 | 3813797 | 3814036 | - | NC_014550.1 | Glutamicibacter arilaitensis Re117 |
| 38 | 7192288 | 7192524 | - | NZ_CP072931.1 | Streptomyces auratus AGR0001 |
| 39 | 5395420 | 5395656 | - | NC_007777.1 | Frankia casuarinae |
| 40 | 3585441 | 3585677 | - | NC_013172.1 | Brachybacterium faecium DSM 4810 |
| 41 | 3197446 | 3197685 | - | NZ_LR131272.1 | Arthrobacter agilis |
| 42 | 1975452 | 1975688 | - | NZ_LN849456.1 | Devriesea agamarum |
| 43 | 4447488 | 4447718 | - | NZ_CP023689.1 | Streptomyces chartreusis |
| 44 | 3399757 | 3399990 | - | NZ_CP033325.1 | Georgenia faecalis |
| 45 | 7488820 | 7489053 | - | NC_013729.1 | Kribbella flavida DSM 17836 |
| 46 | 4288256 | 4288489 | - | NZ_CP043661.1 | Kribbella qitaiheensis |
| 47 | 3290493 | 3290729 | - | NZ_CP061007.1 | Saccharopolyspora spinosa |
| 48 | 2691515 | 2691751 | - | NZ_LR134479.1 | Rothia aeria |
| 49 | 366402 | 366638 | - | NZ_CP022753.1 | Nocardiopsis gilva YIM 90087 |
| 50 | 1762085 | 1762327 | - | NZ_CP066065.1 | Schaalia meyeri |
| 51 | 1408503 | 1408745 | - | NZ_LT635457.1 | Actinomyces pacaensis |
| 52 | 2368615 | 2368851 | - | NZ_CP012117.1 | Dermabacter vaginalis |
| 53 | 4113999 | 4114238 | - | NZ_CP068013.1 | Paenarthrobacter ureafaciens |
| 54 | 2831835 | 2832071 | - | NZ_CP012507.1 | Kocuria palustris |
| 55 | 3128338 | 3128577 | - | NC_010168.1 | Renibacterium salmoninarum ATCC 33209 |
| 56 | 785923 | 786159 | + | NZ_LR134363.1 | Actinomyces slackii |
| 57 | 7053300 | 7053536 | - | NC_015312.1 | Pseudonocardia dioxanivorans CB1190 |
| 58 | 3070373 | 3070609 | - | NZ_CP031356.1 | Brachybacterium saurashtrense |
| 59 | 3936138 | 3936374 | + | NZ_CP023564.1 | Brachybacterium ginsengisoli |
| 60 | 3642436 | 3642675 | + | NZ_CP013745.1 | Arthrobacter alpinus |
| 61 | 447796 | 448035 | - | NZ_CP029642.1 | Arthrobacter dokdonellae |
| 62 | 374568 | 374804 | - | NC_013131.1 | Catenulispora acidiphila DSM 44928 |
| 63 | 1774370 | 1774606 | - | NZ_CP034438.1 | Flaviflexus salsibiostraticola |
| 64 | 3069117 | 3069371 | - | NZ_CP031194.1 | Streptomyces paludis |
| 65 | 2486947 | 2487186 | - | NZ_CP042260.1 | Glutamicibacter halophytocola |
| 66 | 2927760 | 2928002 | + | NZ_CP011005.1 | Psychromicrobium lacuslunae |
| 67 | 1293709 | 1293948 | - | NZ_CP018863.1 | Arthrobacter crystallopoietes |
| 68 | 6954455 | 6954691 | + | NZ_CP029196.1 | Streptomyces venezuelae |
| 69 | 4751220 | 4751456 | + | NZ_CP060404.1 | Streptomyces buecherae |
| 70 | 4584799 | 4585035 | - | NZ_CP059164.1 | Nocardioides ungokensis |
| 71 | 2272954 | 2273190 | + | NZ_LR134357.1 | Actinomyces israelii |
| 72 | 3657855 | 3658091 | - | NZ_CP038213.1 | Ornithinimicrobium flavum |
| 73 | 1892771 | 1893010 | + | NZ_CP018135.1 | Neomicrococcus aestuarii |
| 74 | 3263978 | 3264217 | - | NZ_CP034412.1 | Glutamicibacter creatinolyticus |
| 75 | 3601213 | 3601452 | - | NZ_CP033081.1 | Glutamicibacter nicotianae |
| 76 | 974474 | 974710 | + | NC_014643.1 | Rothia dentocariosa ATCC 17931 |
| 77 | 655350 | 655586 | + | NZ_CP023563.1 | Brachybacterium vulturis |
| 78 | 2794415 | 2794651 | - | NZ_CP035504.1 | Kocuria indica |
| 79 | 4552284 | 4552520 | - | NZ_CP049257.1 | Nocardioides anomalus |
| 80 | 3538669 | 3538905 | - | NZ_CP039292.1 | Actinomyces procaprae |
| 81 | 2420285 | 2420521 | - | NZ_CP056080.1 | Rothia nasimurium |
| 82 | 2400590 | 2400826 | - | NZ_CP061538.1 | Rothia amarae |
| 83 | 1669060 | 1669296 | + | NZ_CP038436.1 | Nocardioides seonyuensis |
| 84 | 2186311 | 2186553 | + | NZ_CP017812.1 | Boudabousia tangfeifanii |
| 85 | 4956513 | 4956749 | + | NZ_CP023691.1 | Streptomyces platensis |
| 86 | 2473983 | 2474219 | - | NZ_CP061539.1 | Rothia terrae |
| 87 | 4889394 | 4889627 | + | NZ_CP071839.1 | Streptomyces cyanogenus |
| 88 | 7131554 | 7131790 | + | NZ_CP010407.1 | Streptomyces vietnamensis |
| 89 | 4809158 | 4809400 | + | NZ_CP051486.1 | Streptomyces pratensis |
| 90 | 3659225 | 3659467 | - | NZ_CP051486.1 | Streptomyces pratensis |
| 91 | 1749739 | 1749975 | + | NZ_AP019307.1 | Nocardioides baekrokdamisoli |
| 92 | 2531708 | 2531944 | + | NZ_CP038267.1 | Nocardioides euryhalodurans |
| 93 | 838631 | 838870 | - | NZ_CP065682.1 | Brevibacterium casei |
| 94 | 8156985 | 8157224 | - | NC_009142.1 | Saccharopolyspora erythraea NRRL 2338 |
| 95 | 647442 | 647678 | + | NZ_CP013254.1 | Kocuria flava |
| 96 | 6386322 | 6386573 | + | NZ_CP018082.1 | Nocardia mangyaensis |
| 97 | 7158430 | 7158681 | + | NZ_CP018082.1 | Nocardia mangyaensis |
| 98 | 1927161 | 1927397 | - | NZ_CP053564.1 | Pseudonocardia broussonetiae |
| 99 | 7201551 | 7201787 | - | NZ_AP018920.1 | Pseudonocardia autotrophica |
| 100 | 6274276 | 6274548 | - | NZ_AP018920.1 | Pseudonocardia autotrophica |
| 101 | 3025959 | 3026195 | + | NZ_CP044344.1 | Nocardioides cynanchi |
| 102 | 4585945 | 4586181 | - | NZ_CP023699.1 | Streptomyces kanamyceticus |
| 103 | 3025319 | 3025555 | - | NZ_CP041146.1 | Nocardioides humi |
| 104 | 5591877 | 5592113 | - | NZ_CP009896.1 | Pimelobacter simplex |
| 105 | 1288835 | 1289071 | - | NZ_CP015079.1 | Nocardioides dokdonensis FR1436 |
| 106 | 3491162 | 3491398 | + | NZ_CP041091.1 | Nocardioides sambongensis |
| 107 | 4968891 | 4969130 | + | NZ_CP022752.1 | Actinopolyspora erythraea |
| 108 | 5197161 | 5197397 | - | NZ_CP022295.1 | Nocardioides aromaticivorans |
| 109 | 631871 | 632119 | + | NC_010572.1 | Streptomyces griseus subsp. griseus NBRC 13350 |
| 110 | 5313642 | 5313875 | + | NZ_CP047020.1 | Streptomyces broussonetiae |
| 111 | 1141592 | 1141840 | - | NZ_CP011786.1 | Bifidobacterium actinocoloniiforme DSM 22766 |
| 112 | 1724203 | 1724457 | - | NZ_CP023698.1 | Streptomyces viridifaciens |
| 113 | 3816550 | 3816786 | + | NZ_CP023698.1 | Streptomyces viridifaciens |
| 114 | 1230129 | 1230362 | - | NC_014168.1 | Segniliparus rotundus DSM 44985 |
| 115 | 1613195 | 1613452 | - | NZ_CP022208.1 | Rhodococcus pyridinivorans |
| 116 | 507579 | 507821 | - | NZ_CP022208.1 | Rhodococcus pyridinivorans |
| 117 | 6668949 | 6669185 | - | NZ_CP029254.1 | Streptomyces spongiicola |
| 118 | 7478526 | 7478762 | + | NZ_CP029043.1 | Streptomyces nigra |
| 119 | 4372105 | 4372344 | + | NZ_CP023695.1 | Streptomyces alboniger |
| 120 | 660290 | 660532 | + | NC_021985.1 | Streptomyces collinus Tu 365 |
| 121 | 5693809 | 5694048 | + | NZ_CP022744.1 | Streptomyces lincolnensis |
| 122 | 1502963 | 1503202 | - | NZ_CP008802.1 | Actinotignum schaalii |
| 123 | 6530487 | 6530735 | + | NZ_CP022521.1 | Actinoalloteichus hoggarensis |
| 124 | 6802955 | 6803203 | + | NZ_LR134352.1 | Nocardia asteroides |
| 125 | 632180 | 632431 | + | NZ_LR134352.1 | Nocardia asteroides |
| 126 | 859184 | 859441 | - | NZ_CP059694.1 | Gordonia rubripertincta |
| 127 | 1206658 | 1206909 | + | NZ_CP068168.1 | Corynebacterium amycolatum |
| 128 | 1107271 | 1107528 | - | NZ_LT906450.1 | Rhodococcus rhodochrous |
| 129 | 5188118 | 5188360 | - | NZ_LT906450.1 | Rhodococcus rhodochrous |
| 130 | 2235530 | 2235769 | - | NZ_CP035810.1 | Brevibacterium luteolum |
| 131 | 4768146 | 4768385 | - | NZ_CP045929.1 | Saccharopolyspora coralli |
| 132 | 2126973 | 2127224 | + | NZ_CP006841.1 | Corynebacterium lactis RW2-5 |
| 133 | 1851958 | 1852215 | + | NZ_LS483468.1 | Rhodococcus coprophilus |
| 134 | 2923320 | 2923562 | + | NZ_LS483468.1 | Rhodococcus coprophilus |
| 135 | 5199441 | 5199683 | - | NZ_CP029146.1 | Rhodococcus ruber |
| 136 | 7568784 | 7569038 | - | NZ_CP022088.2 | Nocardia brasiliensis |
| 137 | 6728350 | 6728601 | - | NZ_CP022088.2 | Nocardia brasiliensis |
| 138 | 7699819 | 7700070 | + | NZ_AP023396.1 | Nocardia wallacei |
| 139 | 7157405 | 7157656 | - | NZ_CP041695.1 | Nocardia otitidiscaviarum |
| 140 | 5067314 | 5067574 | + | NZ_AP022586.1 | Mycolicibacterium litorale |
| 141 | 2953796 | 2954032 | - | NZ_LT985188.1 | Micropruina glycogenica |
| 142 | 2057587 | 2057838 | + | NZ_CP009248.1 | Corynebacterium sphenisci DSM 44792 |
| 143 | 7269563 | 7269811 | - | NZ_CP013738.1 | Streptomyces globisporus C-1027 |
| 144 | 4333444 | 4333707 | - | NZ_AP022601.1 | Mycobacterium gallinarum |
| 145 | 2719592 | 2719828 | + | NZ_CP030862.1 | Streptomyces globosus |
| 146 | 6532770 | 6533006 | + | NZ_CP023693.1 | Streptomyces cinereoruber |
| 147 | 7589947 | 7590183 | + | NZ_CP023692.1 | Streptomyces vinaceus |
| 148 | 7321120 | 7321368 | - | NZ_CP024957.1 | Streptomyces cavourensis |
| 149 | 7835399 | 7835641 | - | NZ_CP020563.1 | Kitasatospora albolonga |
| 150 | 595349 | 595603 | - | NZ_CP048813.1 | Rhodococcus triatomae |
| 151 | 4365436 | 4365675 | - | NZ_CP008953.1 | Amycolatopsis japonica |
| 152 | 1670876 | 1671121 | + | NZ_LT906473.1 | Corynebacterium cystitidis |
| 153 | 4382356 | 4382595 | + | NZ_CP016174.1 | Amycolatopsis orientalis |
| 154 | 4678365 | 4678601 | - | NC_015564.1 | Hoyosella subflava DQS3-9A1 |
| 155 | 5070523 | 5070780 | - | NC_013441.1 | Gordonia bronchialis DSM 43247 |
| 156 | 4085994 | 4086233 | + | NC_021252.1 | Amycolatopsis keratiniphila |
| 157 | 1810101 | 1810334 | + | NZ_CP011312.1 | Corynebacterium kutscheri |
| 158 | 1414696 | 1414959 | + | NZ_AP022618.1 | Mycolicibacterium insubricum |
| 159 | 3563179 | 3563436 | - | NZ_CP033972.1 | Gordonia insulae |
| 160 | 4344048 | 4344290 | + | NZ_AP022565.1 | Mycolicibacterium alvei |
| 161 | 3987837 | 3988088 | - | NZ_AP022616.1 | Mycolicibacterium phocaicum |
| 162 | 5864512 | 5864760 | + | NZ_CP062008.1 | Mycolicibacterium mucogenicum DSM 44124 |
| 163 | 4020879 | 4021142 | + | NZ_AP022593.1 | Mycolicibacterium arabiense |
| 164 | 3613560 | 3613823 | + | NZ_AP022593.1 | Mycolicibacterium arabiense |
| 165 | 2136427 | 2136687 | + | NZ_CP049863.1 | Leucobacter viscericola |
| 166 | 1199233 | 1199493 | - | NZ_AP022596.1 | Mycolicibacterium helvum |
| 167 | 55940 | 56200 | + | NZ_CP049933.1 | Leucobacter coleopterorum |
| 168 | 4853762 | 4854025 | + | NZ_CP023147.1 | Mycobacterium marseillense |
| 169 | 3198499 | 3198759 | - | NZ_CP035037.1 | Leucobacter muris |
| 170 | 5011759 | 5012022 | + | NC_016946.1 | Mycobacterium intracellulare ATCC 13950 |
| 171 | 1154506 | 1154763 | + | NZ_LR134501.1 | Nocardiopsis dassonvillei |
| 172 | 6936526 | 6936780 | - | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 173 | 587468 | 587728 | + | NZ_CP049934.1 | Leucobacter insecticola |
| 174 | 5535211 | 5535474 | - | NZ_CP011269.1 | Mycolicibacterium fortuitum |
| 175 | 6197914 | 6198174 | - | NZ_CP011269.1 | Mycolicibacterium fortuitum |
| 176 | 1980553 | 1980813 | + | NZ_CP035806.1 | Leucobacter triazinivorans |
| 177 | 2811078 | 2811332 | - | NZ_AP022603.1 | Mycolicibacterium fallax |
| 178 | 867948 | 868208 | + | NZ_CP035491.1 | Agromyces protaetiae |
| 179 | 1143651 | 1143908 | + | NZ_CP027114.1 | Gordonia alkanivorans |
| 180 | 1556869 | 1557117 | - | NZ_LS483464.1 | Corynebacterium renale |
| 181 | 4318137 | 4318391 | - | NZ_CP011853.1 | Gordonia phthalatica |
| 182 | 4352401 | 4352661 | - | NZ_CP013979.1 | Agromyces aureus |
| 183 | 2759547 | 2759786 | - | NZ_CP060789.1 | Tessaracoccus defluvii |
| 184 | 3387090 | 3387329 | + | NZ_CP019606.1 | Tessaracoccus aquimaris |
| 185 | 2406339 | 2406593 | + | NZ_AP022568.1 | Mycobacterium simiae |
| 186 | 1512625 | 1512864 | - | NZ_LR214441.1 | Tessaracoccus lapidicaptus |
| 187 | 2705329 | 2705604 | - | NZ_AP022615.1 | Mycobacterium heidelbergense |
| 188 | 2624204 | 2624464 | + | NZ_AP022567.1 | Mycolicibacterium mageritense |
| 189 | 2569862 | 2570122 | - | NZ_CP058670.1 | Chryseoglobus indicus |
| 190 | 245627 | 245884 | - | NZ_CP027433.1 | Gordonia iterans |
| 191 | 871923 | 872156 | + | NZ_CP027433.1 | Gordonia iterans |
| 192 | 1255056 | 1255316 | - | NZ_AP022579.1 | Mycolicibacterium boenickei |
| 193 | 1526896 | 1527156 | + | NZ_AP022598.1 | Mycolicibacterium parafortuitum |
| 194 | 1450530 | 1450793 | + | NZ_AP017457.1 | Aurantimicrobium minutum |
| 195 | 2852164 | 2852427 | - | NZ_CP026949.1 | Mycetocola zhujimingii |
| 196 | 2648789 | 2649052 | + | NZ_AP022589.1 | Mycolicibacter minnesotensis |
| 197 | 5540145 | 5540405 | - | NC_016906.1 | Gordonia polyisoprenivorans VH2 |
| 198 | 4822669 | 4822923 | - | NZ_AP024310.1 | Mycobacterium heckeshornense |
| 199 | 3628532 | 3628789 | + | NZ_AP022573.1 | Mycobacterium saskatchewanense |
| 200 | 2087781 | 2088047 | - | NC_015389.1 | Coriobacterium glomerans PW2 |
| 201 | 3233692 | 3233946 | - | NZ_CP044231.1 | Microbacterium caowuchunii |
| 202 | 6440385 | 6440648 | - | NC_008726.1 | Mycolicibacterium vanbaalenii PYR-1 |
| 203 | 4592311 | 4592559 | - | NZ_AP022561.1 | Mycolicibacterium aichiense |
| 204 | 3310778 | 3311032 | + | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 205 | 3807613 | 3807867 | - | NZ_CP038266.1 | Microbacterium wangchenii |
| 206 | 3632060 | 3632314 | - | NZ_CP044232.1 | Microbacterium lushaniae |
| 207 | 4079322 | 4079579 | + | NZ_AP022620.1 | Mycolicibacterium anyangense |
| 208 | 1340798 | 1341052 | - | NZ_CP012150.1 | Mycobacterium goodii |
| 209 | 510350 | 510613 | + | NZ_AP022560.1 | Mycolicibacterium moriokaense |
| 210 | 1693387 | 1693647 | - | NZ_AP022600.1 | Mycolicibacterium tokaiense |
| 211 | 2314087 | 2314353 | - | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 212 | 2363816 | 2364085 | - | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 213 | 3541208 | 3541435 | - | NZ_CP048103.1 | Kroppenstedtia eburnea |
| 214 | 2555309 | 2555542 | - | NC_018704.1 | Amphibacillus xylanus NBRC 15112 |
| 215 | 908188 | 908448 | + | NZ_AP022574.1 | Mycolicibacterium psychrotolerans |
| 216 | 1239435 | 1239698 | - | NZ_AP022588.1 | Mycolicibacterium sediminis |
| 217 | 498628 | 498864 | + | NZ_CP070511.1 | Parageobacillus toebii |
| 218 | 4323811 | 4324074 | + | NZ_AP022608.1 | Mycolicibacterium gadium |
| 219 | 631066 | 631302 | + | NZ_CP016622.1 | Parageobacillus thermoglucosidasius |
| 220 | 35175 | 35414 | + | NC_013891.1 | Listeria seeligeri serovar 1/2b str. SLCC3954 |
| 221 | 36409 | 36648 | + | NZ_LT906444.1 | Listeria welshimeri |
| 222 | 103955 | 104194 | + | NZ_CP009577.1 | Listeria ivanovii subsp. ivanovii |
| 223 | 50514 | 50753 | + | NC_003210.1 | Listeria monocytogenes EGD-e |
| 224 | 3426827 | 3427084 | + | NZ_AP022569.1 | Mycobacterium cookii |
| 225 | 3500059 | 3500295 | - | NZ_CP009416.1 | Jeotgalibacillus malaysiensis |
| 226 | 209191 | 209427 | + | NZ_CP015438.1 | Anoxybacillus amylolyticus |
| 227 | 2789570 | 2789806 | - | NZ_CP012152.1 | Anoxybacillus gonensis |
| 228 | 4085277 | 4085510 | - | NZ_CP024848.1 | Oceanobacillus zhaokaii |
| 229 | 3527648 | 3527884 | - | NC_006510.1 | Geobacillus kaustophilus HTA426 |
| 230 | 2676883 | 2677119 | - | NZ_CP061470.1 | Geobacillus zalihae |
| 231 | 292108 | 292344 | + | NZ_CP018058.1 | Geobacillus thermocatenulatus |
| 232 | 2413269 | 2413505 | + | NZ_CP061472.1 | Geobacillus thermoleovorans |
| 233 | 3075934 | 3076164 | - | NZ_AP019309.1 | Intestinibaculum porci |
| 234 | 3113649 | 3113885 | - | NZ_CP064060.1 | Anoxybacillus caldiproteolyticus |
| 235 | 3279972 | 3280211 | - | NZ_CP011102.1 | Listeria weihenstephanensis |
| 236 | 33916 | 34155 | + | NZ_LR134483.1 | Listeria grayi |
| 237 | 4198958 | 4199191 | - | NZ_CP015378.1 | Fictibacillus phosphorivorans |
| 238 | 1712968 | 1713207 | - | NZ_CP019573.1 | Abyssicoccus albus |
| 239 | 1012724 | 1012960 | - | NZ_CP017703.1 | Aeribacillus pallidus |
| 240 | 1875019 | 1875258 | + | NZ_CP022096.2 | Staphylococcus pettenkoferi |
| 241 | 4294103 | 4294339 | - | NZ_CP065425.1 | Heyndrickxia vini |
| 242 | 10518 | 10763 | + | NZ_CP017713.1 | Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 |
| 243 | 2208914 | 2209150 | + | NZ_CP049366.1 | Companilactobacillus pabuli |
| 244 | 71196 | 71432 | + | NZ_CP017702.1 | Companilactobacillus farciminis KCTC 3681 = DSM 20184 |
| 245 | 9832 | 10068 | + | NZ_CP040736.1 | Companilactobacillus futsaii |
| 246 | 5213716 | 5213949 | - | NC_007530.2 | Bacillus anthracis str. 'Ames Ancestor' |
| 247 | 5236789 | 5237022 | - | NZ_CP064875.1 | Bacillus toyonensis |
| 248 | 5434274 | 5434507 | - | NZ_CP032365.1 | Bacillus wiedmannii |
| 249 | 2390798 | 2391025 | - | NZ_CP015421.1 | Rhodovulum sulfidophilum |
| 250 | 2183834 | 2184073 | - | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 251 | 5133380 | 5133613 | + | NZ_CP040336.1 | Bacillus luti |
| 252 | 5405331 | 5405564 | - | NC_011725.1 | Bacillus cereus B4264 |
| 253 | 3245941 | 3246177 | + | NZ_CP014342.1 | Geobacillus subterraneus |
| 254 | 9906 | 10142 | + | NZ_CP045530.1 | Limosilactobacillus pontis |
| 255 | 2252721 | 2252957 | - | NZ_CP017996.1 | Companilactobacillus crustorum |
| 256 | 9869 | 10105 | + | NZ_CP045605.1 | Limosilactobacillus reuteri |
| 257 | 3033389 | 3033634 | - | NZ_CP046996.1 | Dehalobacter restrictus |
| 258 | 2642167 | 2642403 | - | NZ_CP012559.1 | Companilactobacillus heilongjiangensis |
| 259 | 9859 | 10095 | + | NZ_CP045240.1 | Limosilactobacillus vaginalis |
| 260 | 19952 | 20179 | + | NZ_CP012502.1 | Bacillus beveridgei |
| 261 | 4771692 | 4771979 | - | NC_016627.1 | Acetivibrio clariflavus DSM 19732 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_009380.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03948.16 | 0.75 | 187 | 18 | same-strand | Ribosomal protein L9, C-terminal domain |
| 2 | PF01281.21 | 0.75 | 187 | 18 | same-strand | Ribosomal protein L9, N-terminal domain |
| 3 | PF00436.27 | 0.79 | 196 | 58.5 | same-strand | Single-strand binding protein family |
| 4 | PF01250.19 | 0.79 | 197 | 659 | same-strand | Ribosomal protein S6 |
++ More..