Protein Information |
Information Type | Description |
---|---|
Protein name | Protein YldA |
NCBI Accession ID | U00096.3 |
Organism | Escherichia coli (strain K12) |
Left | 643330 |
Right | 643419 |
Strand | - |
Nucleotide Sequence | ATGGCAGAAGCATTTTACATCCTGATAGGATTTCTGATTATGGCGGCGATTATCGTCATGGCTGTCCTTTACCTCGAAAACCACTCCTGA |
Sequence | MAEAFYILIGFLIMAAIIVMAVLYLENHS |
Source of smORF | Swiss-Prot |
Function | |
Pubmed ID | 9278503 29645342 |
Domain | |
Functional Category | Others |
Uniprot ID | P0DPN4 |
ORF Length (Amino Acid) | 29 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 724685 | 724774 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
2 | 643330 | 643419 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
3 | 549177 | 549266 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
4 | 4253661 | 4253750 | + | NZ_CP045205.1 | Citrobacter telavivensis |
5 | 2855535 | 2855624 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
6 | 2353376 | 2353465 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
7 | 686112 | 686201 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
8 | 1476280 | 1476369 | - | NZ_CP043318.1 | Enterobacter chengduensis |
9 | 3787891 | 3787980 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
10 | 1219951 | 1220040 | - | NC_015968.1 | Enterobacter soli |
11 | 1228208 | 1228297 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
12 | 1282421 | 1282510 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
13 | 1273307 | 1273396 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
14 | 1283345 | 1283434 | - | NZ_LR134340.1 | Escherichia marmotae |
15 | 2249529 | 2249618 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
16 | 1531490 | 1531579 | + | NZ_CP057657.1 | Escherichia fergusonii |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF00578.23 | 0.6 | 9 | 3078.0 | opposite-strand | AhpC/TSA family |
2 | PF08534.12 | 0.6 | 9 | 3078.0 | opposite-strand | Redoxin |
3 | PF07992.16 | 0.6 | 9 | 1296.5 | opposite-strand | Pyridine nucleotide-disulphide oxidoreductase |
4 | PF00070.29 | 0.6 | 9 | 1296.5 | opposite-strand | Pyridine nucleotide-disulphide oxidoreductase |
5 | PF13192.8 | 0.6 | 9 | 1296.5 | opposite-strand | Thioredoxin domain |
6 | PF00582.28 | 1.0 | 15 | 1430 | same-strand | Universal stress protein family |
7 | PF01272.21 | 1.0 | 15 | 139.5 | same-strand | Transcription elongation factor, GreA/GreB, C-term |
8 | PF14760.8 | 1.0 | 15 | 139.5 | same-strand | Rnk N-terminus |
9 | PF00445.20 | 0.8 | 12 | 1406 | same-strand | Ribonuclease T2 family |
10 | PF01613.20 | 0.6 | 9 | 853 | opposite-strand | Flavin reductase like domain |