Result : P0CY90
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Ferredoxin-1 (Ferredoxin I) (FdI) |
| NCBI Accession ID | M31073.1 |
| Organism | Rhodobacter capsulatus (Rhodopseudomonas capsulata) |
| Left | 295 |
| Right | 492 |
| Strand | + |
| Nucleotide Sequence | ATGGCCATGAAGATCGATCCCGAACTCTGCACCTCTTGCGGCGACTGCGAACCGGTCTGCCCGACCAATGCGATCGCGCCGAAGAAAGGCGTTTATGTGATCAACGCCGACACCTGCACCGAATGCGAAGGCGAGCATGACCTGCCGCAATGCGTCAACGCCTGCATGACCGACAACTGCATCAACCCGGCGGCGTAA |
| Sequence | MAMKIDPELCTSCGDCEPVCPTNAIAPKKGVYVINADTCTECEGEHDLPQCVNACMTDNCINPAA |
| Source of smORF | Swiss-Prot |
| Function | Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. This ferredoxin probably participates in nitrogen fixation. |
| Pubmed ID | 2681157 8264535 1847145 |
| Domain | CDD:394993 |
| Functional Category | Metal-binding |
| Uniprot ID | P0CY90 |
| ORF Length (Amino Acid) | 65 |
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| Conservation Analysis |
No. of Species: 69
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3332617 | 3332814 | - | NZ_CP061202.1 | Rhodobacter capsulatus |
| 2 | 1519986 | 1520186 | + | NZ_CP012661.1 | Defluviimonas alba |
| 3 | 3550751 | 3550945 | - | NC_019940.1 | Thioflavicoccus mobilis 8321 |
| 4 | 1966593 | 1966787 | - | NZ_CP072793.1 | Thiothrix unzii |
| 5 | 1933002 | 1933202 | - | NZ_AP018724.1 | Sulfurivermis fontis |
| 6 | 875678 | 875878 | + | NC_013959.1 | Sideroxydans lithotrophicus ES-1 |
| 7 | 3613509 | 3613703 | + | NZ_CP011412.1 | Sedimenticola thiotaurini |
| 8 | 3404572 | 3404763 | + | NZ_CP010803.1 | Martelella endophytica |
| 9 | 2155813 | 2156013 | - | NC_013851.1 | Allochromatium vinosum DSM 180 |
| 10 | 3981619 | 3981819 | + | NC_018012.1 | Thiocystis violascens DSM 198 |
| 11 | 999338 | 999538 | + | NZ_AP018738.1 | Ferriphaselus amnicola |
| 12 | 308299 | 308499 | - | NC_008789.1 | Halorhodospira halophila SL1 |
| 13 | 674896 | 675096 | + | NZ_CP007031.1 | Marichromatium purpuratum 984 |
| 14 | 3841558 | 3841758 | + | NZ_CP035467.1 | Methylotuvimicrobium buryatense |
| 15 | 583585 | 583788 | + | NZ_CP016210.1 | Azoarcus olearius |
| 16 | 3165784 | 3165972 | + | NZ_CP016210.1 | Azoarcus olearius |
| 17 | 1658666 | 1658869 | + | NZ_CP029331.1 | Thauera hydrothermalis |
| 18 | 1323539 | 1323730 | - | NZ_CP064781.1 | Azospira restricta |
| 19 | 1605945 | 1606145 | + | NC_015572.1 | Methylomonas methanica MC09 |
| 20 | 1301616 | 1301816 | + | NZ_AP017372.2 | Halorhodospira halochloris |
| 21 | 1027267 | 1027467 | + | NZ_CP043929.1 | Methylomonas rhizoryzae |
| 22 | 2065065 | 2065259 | + | NZ_CP039268.1 | Thermochromatium tepidum ATCC 43061 |
| 23 | 1492933 | 1493127 | + | NC_010524.1 | Leptothrix cholodnii SP-6 |
| 24 | 1357268 | 1357468 | + | NZ_CP014476.1 | Methylomonas denitrificans |
| 25 | 5074281 | 5074475 | - | NZ_CP058907.1 | Rhodopseudomonas palustris |
| 26 | 263406 | 263603 | - | NZ_CP011835.1 | Azotobacter chroococcum |
| 27 | 1821489 | 1821680 | + | NZ_CP029829.1 | Azospirillum ramasamyi |
| 28 | 1730111 | 1730305 | + | NZ_CP022423.1 | Vitreoscilla filiformis |
| 29 | 1667104 | 1667295 | - | NZ_CP012401.1 | Azospirillum thiophilum |
| 30 | 12530 | 12724 | - | NZ_CP022991.1 | Paraburkholderia aromaticivorans |
| 31 | 1774643 | 1774837 | - | NC_007952.1 | Paraburkholderia xenovorans LB400 |
| 32 | 795954 | 796151 | + | NZ_CP045302.1 | Azotobacter salinestris |
| 33 | 3718440 | 3718631 | - | NZ_CP030265.1 | Skermanella pratensis |
| 34 | 2637426 | 2637620 | - | NZ_CP017562.1 | Paraburkholderia sprentiae WSM5005 |
| 35 | 537240 | 537434 | + | NZ_CP019240.1 | Rhodoferax antarcticus |
| 36 | 924930 | 925121 | - | NZ_CP054619.1 | Azospirillum oryzae |
| 37 | 512788 | 512982 | + | NC_010627.1 | Paraburkholderia phymatum STM815 |
| 38 | 547029 | 547223 | + | NC_010627.1 | Paraburkholderia phymatum STM815 |
| 39 | 1663266 | 1663460 | + | NC_008781.1 | Polaromonas naphthalenivorans CJ2 |
| 40 | 1143946 | 1144137 | - | NZ_CP029353.1 | Azospirillum thermophilum |
| 41 | 7112829 | 7113038 | - | NZ_LS398110.1 | Bradyrhizobium vignae |
| 42 | 7150226 | 7150420 | - | NZ_LS398110.1 | Bradyrhizobium vignae |
| 43 | 1171782 | 1171979 | + | NC_009937.1 | Azorhizobium caulinodans ORS 571 |
| 44 | 1307567 | 1307752 | - | NC_011891.1 | Anaeromyxobacter dehalogenans 2CP-1 |
| 45 | 252192 | 252389 | - | NC_012560.1 | Azotobacter vinelandii DJ |
| 46 | 2275893 | 2276111 | + | NZ_AP018795.1 | Acidithiobacillus ferridurans |
| 47 | 990506 | 990718 | - | NZ_AP022853.1 | Sulfurimicrobium lacus |
| 48 | 1380439 | 1380627 | + | NC_011027.1 | Chlorobaculum parvum NCIB 8327 |
| 49 | 1380815 | 1381003 | + | NC_011027.1 | Chlorobaculum parvum NCIB 8327 |
| 50 | 177942 | 178136 | + | NZ_CP029426.1 | Bradyrhizobium amphicarpaeae |
| 51 | 3141182 | 3141376 | + | NZ_CP015421.1 | Rhodovulum sulfidophilum |
| 52 | 1184452 | 1184637 | + | NC_017584.1 | Rhodospirillum rubrum F11 |
| 53 | 3145804 | 3145992 | - | NC_017584.1 | Rhodospirillum rubrum F11 |
| 54 | 4051780 | 4051974 | - | NZ_CP053923.1 | Defluviicoccus vanus |
| 55 | 1027470 | 1027688 | + | NC_017161.1 | Hydrogenobacter thermophilus TK-6 |
| 56 | 1862200 | 1862394 | + | NC_006526.2 | Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 |
| 57 | 116017 | 116205 | + | NC_007512.1 | Pelodictyon luteolum DSM 273 |
| 58 | 2119389 | 2119583 | + | NZ_CP022221.1 | Bradyrhizobium zhanjiangense |
| 59 | 1652723 | 1652941 | + | NC_015942.1 | Acidithiobacillus ferrivorans SS3 |
| 60 | 1694149 | 1694343 | + | NZ_CP030050.1 | Bradyrhizobium arachidis |
| 61 | 1327506 | 1327724 | + | NC_011761.1 | Acidithiobacillus ferrooxidans ATCC 23270 |
| 62 | 896424 | 896612 | - | NC_010803.1 | Chlorobium limicola DSM 245 |
| 63 | 1257896 | 1258084 | - | NC_010803.1 | Chlorobium limicola DSM 245 |
| 64 | 1961638 | 1961826 | + | NZ_CP017305.1 | Chlorobaculum limnaeum |
| 65 | 1067633 | 1067821 | - | NZ_CP017305.1 | Chlorobaculum limnaeum |
| 66 | 1612909 | 1613097 | + | NC_008639.1 | Chlorobium phaeobacteroides DSM 266 |
| 67 | 1200237 | 1200425 | - | NC_011060.1 | Pelodictyon phaeoclathratiforme BU-1 |
| 68 | 1649300 | 1649488 | + | NC_002932.3 | Chlorobaculum tepidum TLS |
| 69 | 1184476 | 1184664 | + | NC_002932.3 | Chlorobaculum tepidum TLS |
| 70 | 1181225 | 1181419 | + | NZ_CP030051.1 | Bradyrhizobium guangdongense |
| 71 | 221924 | 222118 | - | NZ_CP029453.1 | Sinorhizobium fredii CCBAU 25509 |
| 72 | 235314 | 235508 | - | NZ_CP023069.1 | Ensifer sojae CCBAU 05684 |
| 73 | 5751298 | 5751492 | - | NZ_CP016428.1 | Bradyrhizobium icense |
| 74 | 455322 | 455516 | + | NC_010581.1 | Beijerinckia indica subsp. indica ATCC 9039 |
| 75 | 3062851 | 3063042 | + | NC_017059.1 | Pararhodospirillum photometricum DSM 122 |
| 76 | 414919 | 415107 | - | NC_017059.1 | Pararhodospirillum photometricum DSM 122 |
| 77 | 213723 | 213917 | - | NZ_CP032696.1 | Rhizobium jaguaris |
| 78 | 1509414 | 1509599 | + | NC_011059.1 | Prosthecochloris aestuarii DSM 271 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_019940.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02579.19 | 0.67 | 46 | 54 | same-strand | Dinitrogenase iron-molybdenum cofactor |
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