Protein Information |
Information Type | Description |
---|---|
Protein name | Putative antitoxin VapB1 |
NCBI Accession ID | AL123456.3 |
Organism | Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) |
Left | 71589 |
Right | 71828 |
Strand | + |
Nucleotide Sequence | ATGGCTACCATTCAAGTTCGGGATTTGCCCGAAGATGTCGCCGAAACCTATCGACGGCGCGCCACCGCAGCGGGGCAGTCGCTGCAGACGTATATGCGCACCAAGCTCATCGAAGGGGTGCGGGGCCGAGACAAGGCCGAGGCAATCGAGATCCTGGAACAGGCGCTCGCCAGCACTGCCAGCCCAGGCATCAGCCGGGAGACCATCGAGGCATCCCGGCGGGAGCTCAGGGGTGGATGA |
Sequence | MATIQVRDLPEDVAETYRRRATAAGQSLQTYMRTKLIEGVRGRDKAEAIEILEQALASTASPGISRETIEASRRELRGG |
Source of smORF | Swiss-Prot |
Function | Antitoxin component of a possible type II toxin-antitoxin (TA) system. The cognate toxin is VapC1. {ECO:0000305|Pubmed:15718296}. |
Pubmed ID | 9634230 15718296 |
Domain | |
Functional Category | Antitoxin_type_2 |
Uniprot ID | P0CW29 |
ORF Length (Amino Acid) | 79 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 71589 | 71828 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
2 | 73650 | 73889 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
3 | 2297998 | 2298237 | - | NZ_AP022583.1 | Mycobacterium noviomagense |
4 | 1852338 | 1852577 | - | NZ_LR134352.1 | Nocardia asteroides |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF01850.23 | 1.0 | 4 | -7.0 | same-strand | PIN domain |