Protein Information |
Information Type | Description |
---|---|
Protein name | Uncharacterized protein Rv1954A |
NCBI Accession ID | AL123456.3 |
Organism | Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) |
Left | 2201277 |
Right | 2201579 |
Strand | + |
Nucleotide Sequence | ATGGCCAGGGGCAGGGTCGTGTGCATTGGGGATGCAGGTTGCGACTGTACACCCGGCGTGTTCCGCGCGACAGCGGGTGGGATGCCGGTGCTGGTGGTCATCGAGTCTGGGACAGGAGGTGATCAGATGGCTCGTAAAGCTACGTCCCCGGGTAAGCCGGCTCCGACGTCGGGACAGTATCGCCCGGTTGGCGGTGGCAACGAGGTGACCGTTCCGAAGGGACACCGTCTGCCTCCCTCGCCCAAGCCCGGTCAGAAGTGGGTGAACGTCGATCCGACGAAGAACAAGAGCGGCCGCGGCTGA |
Sequence | MARGRVVCIGDAGCDCTPGVFRATAGGMPVLVVIESGTGGDQMARKATSPGKPAPTSGQYRPVGGGNEVTVPKGHRLPPSPKPGQKWVNVDPTKNKSGRG |
Source of smORF | Swiss-Prot |
Function | |
Pubmed ID | 9634230 19118359 20585061 |
Domain | |
Functional Category | Others |
Uniprot ID | P0CV86 |
ORF Length (Amino Acid) | 100 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 2201277 | 2201579 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
2 | 2245286 | 2245588 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF05973.16 | 1.0 | 2 | 152.0 | same-strand | Phage derived protein Gp49-like (DUF891) |
2 | PF01381.24 | 1.0 | 2 | 559.0 | same-strand | Helix-turn-helix |
3 | PF13560.8 | 1.0 | 2 | 559.0 | same-strand | Helix-turn-helix domain |
4 | PF05016.17 | 1.0 | 2 | 2102.5 | opposite-strand | ParE toxin of type II toxin-antitoxin system, parDE |