Result : P0AFX1
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Ribosome hibernation promoting factor (HPF) (Hibernation factor HPF) |
| NCBI Accession ID | AE014075.1 |
| Organism | Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) |
| Left | 3779666 |
| Right | 3779953 |
| Strand | + |
| Nucleotide Sequence | ATGCAGCTCAACATTACCGGAAATAACGTCGAGATCACCGAGGCACTGCGCGAATTTGTTACAGCCAAATTTGCCAAACTTGAGCAATATTTTGACCGAATCAACCAGGTCTATGTTGTTCTGAAAGTGGAGAAAGTCACCCACACCTCAGATGCAACACTGCATGTAAACGGTGGTGAAATTCATGCCAGCGCGGAAGGTCAGGACATGTACGCTGCCATTGATGGCTTAATTGATAAGCTGGCACGCCAGTTGACCAAACATAAAGATAAACTGAAACAACACTAA |
| Sequence | MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH |
| Source of smORF | Swiss-Prot |
| Function | During stationary phase, promotes and stabilizes dimerization of 70S ribosomes by the ribosome modulation factor (RMF), leading to the formation of inactive 100S ribosomes. {ECO:0000250|UniProtKB:P0AFX0}. |
| Pubmed ID | 12471157 |
| Domain | CDD:412259 |
| Functional Category | Others |
| Uniprot ID | P0AFX1 |
| ORF Length (Amino Acid) | 95 |
++ More..
| Conservation Analysis |
No. of Species: 385
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 470410 | 470697 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 2 | 3338341 | 3338628 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 3 | 4088654 | 4088941 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 4 | 3346173 | 3346460 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 5 | 3851326 | 3851613 | + | NZ_LR134340.1 | Escherichia marmotae |
| 6 | 3329732 | 3330019 | + | NZ_AP014857.1 | Escherichia albertii |
| 7 | 2270833 | 2271120 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 8 | 4249524 | 4249811 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 9 | 1077520 | 1077807 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 10 | 5240310 | 5240597 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 11 | 3927404 | 3927691 | - | NZ_CP038469.1 | Citrobacter tructae |
| 12 | 2151811 | 2152098 | + | NZ_CP033744.1 | Citrobacter freundii |
| 13 | 2929382 | 2929669 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 14 | 1756082 | 1756369 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 15 | 5369164 | 5369451 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 16 | 1340788 | 1341075 | + | NZ_CP053416.1 | Salmonella bongori |
| 17 | 3485873 | 3486160 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 18 | 2608861 | 2609148 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 19 | 4358925 | 4359212 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 20 | 4873986 | 4874273 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 21 | 4087803 | 4088090 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 22 | 325519 | 325806 | - | NZ_LR134201.1 | Cedecea lapagei |
| 23 | 322286 | 322573 | - | NZ_CP023525.1 | Cedecea neteri |
| 24 | 4094196 | 4094483 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 25 | 4218876 | 4219163 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 26 | 4183166 | 4183453 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 27 | 4523182 | 4523469 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 28 | 489064 | 489351 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 29 | 4786302 | 4786589 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 30 | 496858 | 497145 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 31 | 557332 | 557619 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 32 | 1149933 | 1150220 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 33 | 451435 | 451722 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 34 | 3587361 | 3587648 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 35 | 4169282 | 4169569 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 36 | 3121905 | 3122192 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 37 | 4289135 | 4289422 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 38 | 1918244 | 1918531 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 39 | 4180166 | 4180453 | + | NC_015968.1 | Enterobacter soli |
| 40 | 3643526 | 3643813 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 41 | 537677 | 537964 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 42 | 388688 | 388975 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 43 | 2987613 | 2987900 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 44 | 4168208 | 4168495 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 45 | 4765042 | 4765329 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 46 | 3712053 | 3712340 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 47 | 2885707 | 2885994 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 48 | 488398 | 488685 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 49 | 454513 | 454800 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 50 | 521082 | 521369 | - | NZ_CP050508.1 | Raoultella terrigena |
| 51 | 604416 | 604703 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 52 | 514681 | 514968 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 53 | 345422 | 345709 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 54 | 528400 | 528687 | - | NZ_CP054254.1 | Klebsiella variicola |
| 55 | 502466 | 502753 | - | NZ_CP041247.1 | Raoultella electrica |
| 56 | 1170347 | 1170634 | + | NZ_CP026047.1 | Raoultella planticola |
| 57 | 552778 | 553065 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 58 | 623448 | 623735 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 59 | 510830 | 511117 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 60 | 548316 | 548603 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 61 | 439356 | 439643 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 62 | 4503422 | 4503709 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 63 | 643040 | 643327 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 64 | 375151 | 375438 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 65 | 3596081 | 3596368 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 66 | 4060975 | 4061262 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 67 | 4315573 | 4315860 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 68 | 388354 | 388641 | - | NZ_LT615367.1 | Dickeya aquatica |
| 69 | 3327727 | 3328014 | - | NZ_CP049115.1 | Pantoea stewartii |
| 70 | 342489 | 342776 | - | NZ_CP025799.1 | Dickeya zeae |
| 71 | 2499782 | 2500069 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 72 | 2439900 | 2440187 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 73 | 375318 | 375605 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 74 | 4242871 | 4243158 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 75 | 4080243 | 4080530 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 76 | 331161 | 331448 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 77 | 2443865 | 2444152 | + | NZ_CP009787.1 | Yersinia rohdei |
| 78 | 340629 | 340916 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 79 | 1767591 | 1767878 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 80 | 500270 | 500557 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 81 | 4163787 | 4164074 | + | NZ_CP043727.1 | Yersinia canariae |
| 82 | 4225819 | 4226106 | + | NZ_CP032487.1 | Yersinia hibernica |
| 83 | 1051619 | 1051906 | + | NZ_CP007230.1 | Yersinia similis |
| 84 | 359531 | 359818 | - | NZ_CP046293.1 | Yersinia intermedia |
| 85 | 3120865 | 3121152 | + | NZ_CP067057.1 | Rahnella aceris |
| 86 | 2203737 | 2204024 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 87 | 525812 | 526099 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 88 | 675361 | 675648 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 89 | 3926448 | 3926735 | + | NZ_CP050150.1 | Hafnia alvei |
| 90 | 1111579 | 1111866 | + | NZ_CP011254.1 | Serratia fonticola |
| 91 | 3531891 | 3532178 | + | NZ_CP065534.1 | Lonsdalea populi |
| 92 | 4828616 | 4828903 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 93 | 4771147 | 4771434 | + | NZ_LR134494.1 | Serratia quinivorans |
| 94 | 953616 | 953903 | + | NZ_CP065640.1 | Serratia rubidaea |
| 95 | 4719263 | 4719550 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 96 | 3847552 | 3847839 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 97 | 3245715 | 3246002 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 98 | 527969 | 528256 | - | NZ_CP071320.1 | Serratia ureilytica |
| 99 | 3879085 | 3879372 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 100 | 339245 | 339532 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 101 | 4624068 | 4624355 | + | NZ_LT906479.1 | Serratia ficaria |
| 102 | 4661777 | 4662064 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 103 | 352488 | 352775 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 104 | 4107692 | 4107979 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 105 | 3741935 | 3742222 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 106 | 2107539 | 2107826 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 107 | 4595083 | 4595370 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 108 | 1411457 | 1411744 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 109 | 341724 | 342011 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 110 | 488886 | 489173 | - | NZ_CP061511.1 | Mixta calida |
| 111 | 4448878 | 4449165 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 112 | 1102467 | 1102754 | + | NZ_CP019706.1 | Pantoea alhagi |
| 113 | 505585 | 505872 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 114 | 216783 | 217070 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 115 | 1265599 | 1265886 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 116 | 4503490 | 4503777 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 117 | 4228048 | 4228335 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 118 | 4324753 | 4325040 | - | NZ_CP028271.1 | Mixta intestinalis |
| 119 | 563652 | 563939 | - | NZ_CP026377.1 | Mixta gaviniae |
| 120 | 2274694 | 2274981 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 121 | 1142771 | 1143058 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 122 | 3169045 | 3169332 | + | NZ_CP016043.1 | Edwardsiella hoshinae |
| 123 | 195508 | 195795 | - | NZ_CP015581.1 | Tatumella citrea |
| 124 | 4282479 | 4282766 | + | NC_012962.1 | Photorhabdus asymbiotica |
| 125 | 3034276 | 3034563 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 126 | 3984975 | 3985262 | - | NC_010554.1 | Proteus mirabilis HI4320 |
| 127 | 563073 | 563360 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 128 | 3662650 | 3662937 | + | NZ_CP038853.1 | Pantoea vagans |
| 129 | 514123 | 514410 | - | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 130 | 3671988 | 3672275 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 131 | 2104342 | 2104629 | - | NZ_CP026364.1 | Proteus hauseri |
| 132 | 407834 | 408121 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 133 | 1557065 | 1557352 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 134 | 3702278 | 3702565 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 135 | 3788322 | 3788609 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 136 | 3722026 | 3722313 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 137 | 3228721 | 3229008 | + | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 138 | 479696 | 479983 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 139 | 2867520 | 2867807 | + | NZ_CP011039.1 | Pseudoalteromonas spongiae UST010723-006 |
| 140 | 1581412 | 1581699 | + | NZ_CP072133.1 | Pseudoalteromonas xiamenensis |
| 141 | 1790973 | 1791260 | - | NZ_CP072425.1 | Pseudoalteromonas viridis |
| 142 | 557237 | 557524 | - | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 143 | 3811963 | 3812250 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 144 | 463920 | 464207 | + | NZ_CP009888.1 | Pseudoalteromonas piratica |
| 145 | 520216 | 520503 | - | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 146 | 369122 | 369409 | - | NZ_CP040021.1 | Salinivibrio kushneri |
| 147 | 3529544 | 3529831 | + | NZ_LS483422.1 | Providencia heimbachae |
| 148 | 876522 | 876809 | - | NC_013456.1 | Vibrio antiquarius |
| 149 | 3663953 | 3664240 | + | NZ_CP048796.1 | Providencia vermicola |
| 150 | 3518585 | 3518872 | + | NZ_CP031416.1 | Gallaecimonas mangrovi |
| 151 | 1374982 | 1375269 | + | NZ_CP041660.1 | Catenovulum sediminis |
| 152 | 696338 | 696625 | - | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 153 | 3050269 | 3050556 | + | NZ_CP031123.2 | Providencia huaxiensis |
| 154 | 3025112 | 3025399 | - | NZ_CP040449.1 | Aeromonas simiae |
| 155 | 1538355 | 1538642 | - | NZ_CP029736.1 | Providencia rettgeri |
| 156 | 110517 | 110804 | - | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 157 | 339887 | 340174 | - | NZ_CP071325.1 | Photobacterium ganghwense |
| 158 | 4731412 | 4731699 | + | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 159 | 663618 | 663905 | - | NC_013166.1 | Kangiella koreensis DSM 16069 |
| 160 | 1955598 | 1955885 | + | NZ_CP012418.1 | Kangiella sediminilitoris |
| 161 | 596839 | 597126 | - | NZ_CP025120.1 | Kangiella profundi |
| 162 | 2002408 | 2002695 | + | NZ_AP018689.1 | Vibrio aphrogenes |
| 163 | 626035 | 626322 | - | NZ_AP018685.1 | Vibrio rumoiensis |
| 164 | 450877 | 451164 | - | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 165 | 880578 | 880865 | + | NZ_CP014056.2 | Grimontia hollisae |
| 166 | 414571 | 414858 | - | NC_006512.1 | Idiomarina loihiensis L2TR |
| 167 | 2798683 | 2798970 | + | NZ_CP030788.1 | Vibrio campbellii |
| 168 | 3358837 | 3359124 | + | NZ_CP009467.1 | Vibrio harveyi |
| 169 | 2929697 | 2929984 | + | NZ_CP031961.1 | Pseudoalteromonas tunicata |
| 170 | 2660298 | 2660585 | + | NZ_CP029347.1 | Saliniradius amylolyticus |
| 171 | 1944958 | 1945245 | + | NZ_CP010975.1 | Kangiella geojedonensis |
| 172 | 246718 | 247005 | - | NZ_CP018312.1 | Vibrio rotiferianus |
| 173 | 4142810 | 4143097 | - | NZ_LR134376.1 | Aeromonas encheleia |
| 174 | 2281526 | 2281813 | - | NZ_CP019959.1 | Vibrio owensii |
| 175 | 3086244 | 3086531 | - | NZ_CP051883.1 | Aeromonas salmonicida |
| 176 | 4378712 | 4378999 | - | NZ_CP050851.1 | Aeromonas hydrophila |
| 177 | 490578 | 490865 | + | NZ_AP022188.1 | Aeromonas media |
| 178 | 3888321 | 3888608 | + | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 179 | 563418 | 563705 | - | NZ_CP017689.1 | Thalassotalea crassostreae |
| 180 | 380205 | 380492 | - | NZ_CP028897.1 | Dongshaea marina |
| 181 | 3117438 | 3117725 | - | NZ_CP065745.1 | Aeromonas allosaccharophila |
| 182 | 2866258 | 2866545 | - | NZ_CP044060.1 | Aeromonas veronii |
| 183 | 2789840 | 2790127 | + | NZ_CP045350.1 | Vibrio aquimaris |
| 184 | 676169 | 676456 | - | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 185 | 452395 | 452682 | - | NZ_CP046268.1 | Vibrio spartinae |
| 186 | 330246 | 330533 | - | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 187 | 2651079 | 2651366 | + | NZ_CP016414.1 | Vibrio scophthalmi |
| 188 | 2703299 | 2703586 | - | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 189 | 1282973 | 1283260 | + | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 190 | 416594 | 416881 | - | NZ_CP032093.1 | Vibrio alfacsensis |
| 191 | 457189 | 457476 | - | NZ_CP044069.1 | Vibrio vulnificus |
| 192 | 3404071 | 3404358 | + | NZ_CP020373.1 | Shewanella khirikhana |
| 193 | 317077 | 317364 | - | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 194 | 3144212 | 3144499 | - | NZ_CP014035.2 | Vibrio fluvialis |
| 195 | 389636 | 389923 | - | NZ_CP047475.1 | Vibrio astriarenae |
| 196 | 365330 | 365617 | - | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 197 | 679845 | 680132 | - | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 198 | 3592139 | 3592426 | + | NZ_CP069213.1 | Shewanella litorisediminis |
| 199 | 3665019 | 3665306 | + | NC_008700.1 | Shewanella amazonensis SB2B |
| 200 | 2922541 | 2922828 | + | NC_011753.2 | Vibrio atlanticus |
| 201 | 799983 | 800270 | - | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 202 | 72816 | 73103 | + | NZ_CP040990.1 | Vibrio furnissii |
| 203 | 2509012 | 2509299 | + | NZ_CP033078.1 | Vibrio zhugei |
| 204 | 598457 | 598744 | - | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 205 | 462907 | 463215 | - | NZ_CP017715.1 | Marinobacter salinus |
| 206 | 2581531 | 2581839 | + | NC_017506.1 | Marinobacter adhaerens HP15 |
| 207 | 2416945 | 2417232 | + | NZ_CP022741.1 | Vibrio qinghaiensis |
| 208 | 2647049 | 2647336 | + | NZ_AP019651.1 | Vibrio taketomensis |
| 209 | 11439 | 11726 | - | NZ_AP019657.1 | Vibrio ponticus |
| 210 | 968208 | 968495 | - | NC_016041.1 | Glaciecola nitratireducens FR1064 |
| 211 | 2632263 | 2632550 | - | NZ_CP021376.1 | Oceanisphaera avium |
| 212 | 3524794 | 3525081 | + | NZ_CP012621.1 | Zobellella denitrificans |
| 213 | 1838975 | 1839262 | - | NZ_CP065150.1 | Vibrio kanaloae |
| 214 | 1529087 | 1529395 | - | NZ_CP020931.1 | Marinobacter salarius |
| 215 | 2218077 | 2218364 | - | NZ_CP046793.1 | Vibrio metschnikovii |
| 216 | 2573593 | 2573880 | + | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 217 | 3030189 | 3030476 | + | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 218 | 3149431 | 3149718 | + | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 219 | 870097 | 870384 | - | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 220 | 3705806 | 3706093 | + | NZ_CP022272.1 | Shewanella marisflavi |
| 221 | 418840 | 419127 | - | NZ_CP011041.1 | Pseudoalteromonas tetraodonis |
| 222 | 462074 | 462361 | - | NZ_CP011030.1 | Pseudoalteromonas issachenkonii |
| 223 | 3216550 | 3216837 | + | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 224 | 3953111 | 3953398 | + | NC_009092.1 | Shewanella loihica PV-4 |
| 225 | 2824929 | 2825216 | + | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 226 | 3067043 | 3067330 | + | NZ_AP014635.1 | Vibrio tritonius |
| 227 | 2568737 | 2569024 | + | NZ_CP041783.1 | Shewanella donghaensis |
| 228 | 2995250 | 2995558 | + | NZ_CP043042.1 | Marinobacter fonticola |
| 229 | 844727 | 845014 | - | NZ_CP046378.1 | Shewanella algae |
| 230 | 2628679 | 2628969 | + | NZ_CP043869.1 | Neptunomonas concharum |
| 231 | 2642183 | 2642491 | + | NZ_CP031093.1 | Hydrocarboniclastica marina |
| 232 | 576078 | 576371 | - | NZ_LN681225.1 | Legionella hackeliae |
| 233 | 3033109 | 3033396 | + | NZ_CP051180.1 | Ferrimonas lipolytica |
| 234 | 2831620 | 2831919 | + | NZ_CP011494.1 | Marinobacter psychrophilus |
| 235 | 5855131 | 5855418 | + | NZ_CP014782.1 | Shewanella psychrophila |
| 236 | 2996478 | 2996765 | - | NZ_CP034759.1 | Litorilituus sediminis |
| 237 | 2701245 | 2701538 | + | NZ_CP016397.1 | Legionella clemsonensis |
| 238 | 4300228 | 4300515 | + | NZ_CP020472.1 | Shewanella japonica |
| 239 | 4408324 | 4408611 | + | NZ_CP034015.1 | Shewanella livingstonensis |
| 240 | 560373 | 560660 | - | NC_007954.1 | Shewanella denitrificans OS217 |
| 241 | 3314113 | 3314400 | - | NZ_LS483250.1 | Moritella yayanosii |
| 242 | 4024548 | 4024835 | + | NC_008345.1 | Shewanella frigidimarina NCIMB 400 |
| 243 | 2231000 | 2231287 | + | NZ_CP035688.1 | Vibrio metoecus |
| 244 | 1531513 | 1531842 | + | NZ_CP007030.1 | Thiomicrospira aerophila AL3 |
| 245 | 2125488 | 2125796 | - | NZ_CP021425.1 | Oleiphilus messinensis |
| 246 | 863412 | 863699 | - | NC_016901.1 | Shewanella baltica OS678 |
| 247 | 3974995 | 3975282 | + | NZ_CP022358.1 | Shewanella bicestrii |
| 248 | 1573908 | 1574195 | + | NZ_CP020465.1 | Cognaticolwellia beringensis |
| 249 | 1636722 | 1637009 | - | NZ_CP023536.1 | Providencia alcalifaciens |
| 250 | 481111 | 481398 | - | NC_014012.1 | Shewanella violacea DSS12 |
| 251 | 5142973 | 5143260 | + | NC_010506.1 | Shewanella woodyi ATCC 51908 |
| 252 | 596823 | 597152 | - | NC_015581.1 | Thiomicrospira cyclica ALM1 |
| 253 | 478430 | 478723 | - | NZ_LT906451.1 | Legionella lansingensis |
| 254 | 681357 | 681644 | - | NC_011566.1 | Shewanella piezotolerans WP3 |
| 255 | 2700678 | 2700965 | + | NC_007481.1 | Pseudoalteromonas translucida |
| 256 | 2973911 | 2974198 | + | NZ_CP011036.1 | Pseudoalteromonas nigrifaciens |
| 257 | 2238364 | 2238696 | + | NZ_AP018724.1 | Sulfurivermis fontis |
| 258 | 4221208 | 4221495 | - | NZ_CP044399.1 | Moritella marina ATCC 15381 |
| 259 | 4796024 | 4796311 | + | NC_003910.7 | Colwellia psychrerythraea 34H |
| 260 | 2206041 | 2206328 | - | NZ_CP021377.1 | Oceanisphaera profunda |
| 261 | 473289 | 473582 | - | NZ_CP038254.1 | Legionella israelensis |
| 262 | 1597698 | 1597985 | + | NZ_CP036200.1 | Shewanella maritima |
| 263 | 3222841 | 3223128 | + | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 264 | 846249 | 846554 | - | NZ_CP051183.1 | Bermanella marisrubri |
| 265 | 3159805 | 3160125 | + | NZ_CP016268.1 | Woeseia oceani |
| 266 | 1311774 | 1312064 | - | NZ_CP015839.1 | Marinobacterium aestuarii |
| 267 | 4408632 | 4408919 | + | NC_009901.1 | Shewanella pealeana ATCC 700345 |
| 268 | 588629 | 588958 | - | NZ_CP040602.1 | Thiomicrorhabdus sediminis |
| 269 | 1860268 | 1860594 | + | NZ_CP012373.2 | Beggiatoa leptomitoformis |
| 270 | 3168409 | 3168738 | + | NZ_CP007029.1 | Thioalkalivibrio paradoxus ARh 1 |
| 271 | 3975395 | 3975694 | + | NC_018691.1 | Alcanivorax dieselolei B5 |
| 272 | 517527 | 517826 | - | NZ_CP013742.1 | Legionella pneumophila |
| 273 | 5461041 | 5461349 | + | NC_007645.1 | Hahella chejuensis KCTC 2396 |
| 274 | 3487831 | 3488118 | - | NZ_CP048711.1 | Kineobactrum salinum |
| 275 | 306385 | 306711 | - | NC_014315.1 | Nitrosococcus watsonii C-113 |
| 276 | 4505454 | 4505741 | + | NC_010334.1 | Shewanella halifaxensis HAW-EB4 |
| 277 | 3168317 | 3168643 | + | NC_007484.1 | Nitrosococcus oceani ATCC 19707 |
| 278 | 828899 | 829192 | - | NZ_LN614830.1 | Tatlockia micdadei |
| 279 | 1209684 | 1209992 | - | NZ_CP071706.1 | Pseudomonas donghuensis |
| 280 | 4253587 | 4253895 | + | NZ_CP023559.1 | Salinicola tamaricis |
| 281 | 328898 | 329224 | - | NC_013960.1 | Nitrosococcus halophilus Nc 4 |
| 282 | 2733068 | 2733397 | + | NC_019902.2 | Thioalkalivibrio nitratireducens DSM 14787 |
| 283 | 1121846 | 1122154 | - | NZ_CP022562.1 | Pseudomonas monteilii |
| 284 | 6210181 | 6210489 | - | NZ_CP009365.1 | Pseudomonas soli |
| 285 | 775077 | 775409 | - | NZ_CP033040.1 | Thiomicrorhabdus indica |
| 286 | 992244 | 992552 | - | NZ_CP043311.1 | Pseudomonas lalkuanensis |
| 287 | 1241121 | 1241447 | - | NZ_CP038033.1 | Nitrosococcus wardiae |
| 288 | 2932880 | 2933182 | + | NZ_LN614827.1 | Legionella fallonii LLAP-10 |
| 289 | 1283799 | 1284107 | - | NZ_AP022642.1 | Pseudomonas otitidis |
| 290 | 966704 | 967003 | - | NZ_CP004387.1 | Alcanivorax pacificus W11-5 |
| 291 | 778879 | 779178 | - | NZ_LT906442.1 | Legionella waltersii |
| 292 | 399144 | 399482 | - | NZ_CP011367.1 | Thioalkalivibrio versutus |
| 293 | 3182207 | 3182500 | + | NC_013861.1 | Legionella longbeachae NSW150 |
| 294 | 989384 | 989671 | - | NZ_CP036422.1 | Halioglobus maricola |
| 295 | 781328 | 781651 | - | NC_011901.1 | Thioalkalivibrio sulfidiphilus HL-EbGr7 |
| 296 | 1039793 | 1040101 | - | NZ_AP014862.1 | Pseudomonas furukawaii |
| 297 | 1176091 | 1176378 | + | NZ_CP052766.1 | Alteromonas pelagimontana |
| 298 | 4818325 | 4818633 | + | NZ_CP047698.1 | Pseudomonas knackmussii |
| 299 | 1258499 | 1258807 | - | NZ_CP014158.1 | Pseudomonas citronellolis |
| 300 | 1064782 | 1065090 | - | NZ_CP024159.1 | Pseudomonas mosselii |
| 301 | 1145729 | 1146037 | - | NC_008027.1 | Pseudomonas entomophila L48 |
| 302 | 3127204 | 3127512 | + | NZ_CP042382.1 | Pistricoccus aurantiacus |
| 303 | 5051835 | 5052143 | + | NZ_CP048878.1 | Spartinivicinus ruber |
| 304 | 2169464 | 2169799 | + | NZ_CP011412.1 | Sedimenticola thiotaurini |
| 305 | 211808 | 212104 | + | NZ_LR134418.1 | Legionella adelaidensis |
| 306 | 1004363 | 1004653 | - | NZ_LR699114.1 | Aquicella lusitana |
| 307 | 1547691 | 1547999 | + | NZ_CP045302.1 | Azotobacter salinestris |
| 308 | 2499071 | 2499379 | + | NC_007963.1 | Chromohalobacter salexigens DSM 3043 |
| 309 | 3035687 | 3035977 | + | NZ_AP014545.1 | Amphritea japonica ATCC BAA-1530 |
| 310 | 4753247 | 4753555 | + | NZ_CP046621.1 | Pseudomonas alkylphenolica |
| 311 | 4936571 | 4936879 | + | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 312 | 5082216 | 5082524 | + | NZ_CP070503.1 | Pseudomonas atacamensis |
| 313 | 4994441 | 4994749 | + | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 314 | 1009656 | 1009964 | - | NZ_CP068551.1 | Pseudomonas khazarica |
| 315 | 2857057 | 2857350 | + | NZ_CP025491.2 | Legionella sainthelensi |
| 316 | 25869 | 26156 | + | NZ_CP029822.1 | Entomomonas moraniae |
| 317 | 5943552 | 5943860 | + | NZ_CP048833.1 | Pseudomonas multiresinivorans |
| 318 | 711111 | 711398 | - | NZ_CP046670.1 | Alteromonas mediterranea |
| 319 | 859864 | 860151 | - | NZ_CP008849.1 | Alteromonas australica |
| 320 | 4042664 | 4042972 | + | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 321 | 716283 | 716570 | - | NZ_CP031769.1 | Salinimonas sediminis |
| 322 | 2186364 | 2186672 | + | NZ_CP043420.1 | Kushneria phosphatilytica |
| 323 | 3072404 | 3072691 | - | NZ_CP037953.1 | Permianibacter aggregans |
| 324 | 4216799 | 4217107 | + | NZ_CP060009.1 | Pseudomonas sediminis |
| 325 | 3354538 | 3354846 | - | NZ_CP070505.1 | Pseudomonas toyotomiensis |
| 326 | 916081 | 916368 | - | NZ_CP014322.1 | Alteromonas addita |
| 327 | 3298559 | 3298846 | + | NC_015554.1 | Alteromonas naphthalenivorans |
| 328 | 4581629 | 4581937 | - | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 329 | 1126508 | 1126816 | - | NZ_CP011835.1 | Azotobacter chroococcum |
| 330 | 3903371 | 3903679 | + | NZ_LR215729.2 | Pseudomonas marincola |
| 331 | 3047600 | 3047935 | + | NC_019940.1 | Thioflavicoccus mobilis 8321 |
| 332 | 4998827 | 4999135 | + | NZ_CP007039.1 | Pseudomonas cichorii JBC1 |
| 333 | 778758 | 779063 | - | NZ_CP012400.2 | Pseudomonas yamanorum |
| 334 | 969578 | 969883 | - | NZ_CP027723.1 | Pseudomonas orientalis |
| 335 | 974326 | 974631 | - | NZ_CP010896.1 | Pseudomonas simiae |
| 336 | 4902439 | 4902747 | + | NZ_CP068034.2 | Pseudomonas syringae |
| 337 | 4967739 | 4968047 | + | NZ_CP042804.1 | Pseudomonas amygdali pv. tabaci str. ATCC 11528 |
| 338 | 3034493 | 3034801 | - | NZ_CP048812.1 | Halomonas socia |
| 339 | 4837932 | 4838240 | + | NZ_CP067022.1 | Pseudomonas cannabina pv. alisalensis |
| 340 | 2439981 | 2440304 | + | NC_018012.1 | Thiocystis violascens DSM 198 |
| 341 | 5018797 | 5019105 | + | NC_004578.1 | Pseudomonas syringae pv. tomato str. DC3000 |
| 342 | 1030305 | 1030613 | - | NZ_CP035088.1 | Pseudomonas viciae |
| 343 | 1025632 | 1025940 | - | NZ_CP051487.1 | Pseudomonas umsongensis |
| 344 | 3413861 | 3414148 | + | NZ_CP036536.1 | Salinimonas lutimaris |
| 345 | 1025898 | 1026203 | - | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 346 | 1245045 | 1245353 | - | NC_012560.1 | Azotobacter vinelandii DJ |
| 347 | 932376 | 932684 | + | NZ_CP012362.1 | Oblitimonas alkaliphila |
| 348 | 997662 | 997967 | - | NZ_CP023272.1 | Pseudomonas lurida |
| 349 | 3589464 | 3589772 | + | NZ_CP012676.1 | Pseudomonas versuta |
| 350 | 1123011 | 1123316 | - | NZ_CP027756.1 | Pseudomonas synxantha |
| 351 | 5048015 | 5048302 | + | NZ_CP037952.1 | Parashewanella spongiae |
| 352 | 4573770 | 4574078 | - | NZ_CP014262.1 | Pseudomonas corrugata |
| 353 | 3108576 | 3108884 | + | NZ_CP048810.1 | Pseudomonas bijieensis |
| 354 | 1074382 | 1074690 | - | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 355 | 2717359 | 2717667 | - | NZ_CP019343.1 | Oceanicoccus sagamiensis |
| 356 | 5003161 | 5003469 | + | NZ_CP049044.1 | Pseudomonas psychrophila |
| 357 | 1062569 | 1062874 | - | NZ_LS999205.1 | Pseudomonas protegens CHA0 |
| 358 | 1042230 | 1042538 | - | NZ_CP029608.1 | Pseudomonas kribbensis |
| 359 | 4142430 | 4142738 | + | NZ_CP014205.2 | Pseudomonas glycinae |
| 360 | 1066561 | 1066869 | - | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 361 | 1028030 | 1028338 | - | NZ_CP062252.1 | Pseudomonas allokribbensis |
| 362 | 5659396 | 5659704 | + | NZ_CP014870.1 | Pseudomonas silesiensis |
| 363 | 1623483 | 1623791 | - | NZ_CP013106.1 | Halomonas huangheensis |
| 364 | 2917233 | 2917541 | + | NZ_CP065435.1 | Halomonas sp. SS10-MC5 |
| 365 | 1070899 | 1071210 | - | NC_014532.2 | Halomonas elongata DSM 2581 |
| 366 | 2845829 | 2846137 | + | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 367 | 1216265 | 1216573 | - | NZ_CP014226.1 | Halomonas chromatireducens |
| 368 | 829495 | 829803 | - | NZ_CP009533.1 | Pseudomonas rhizosphaerae |
| 369 | 4121440 | 4121766 | + | NZ_CP041335.1 | Chitinolyticbacter meiyuanensis |
| 370 | 990228 | 990551 | - | NZ_CP035704.1 | Pseudolysobacter antarcticus |
| 371 | 3208853 | 3209146 | + | NZ_CP019650.1 | Microbulbifer agarilyticus |
| 372 | 1238275 | 1238586 | - | NZ_CP021435.1 | Halomonas beimenensis |
| 373 | 428992 | 429300 | + | NZ_CP018139.1 | Halomonas aestuarii |
| 374 | 1058139 | 1058444 | - | NZ_CP018420.1 | Pseudomonas veronii |
| 375 | 1097409 | 1097714 | - | NZ_CP031415.1 | Saccharospirillum mangrovi |
| 376 | 4180321 | 4180629 | + | NZ_CP059082.1 | Halomonas titanicae |
| 377 | 2339021 | 2339329 | + | NZ_CP048602.1 | Halomonas piezotolerans |
| 378 | 5426449 | 5426757 | + | NZ_CP056030.1 | Pseudomonas eucalypticola |
| 379 | 3941561 | 3941875 | + | NZ_CP062158.2 | Pseudomonas lundensis |
| 380 | 2376855 | 2377163 | + | NZ_AP022843.1 | Halomonas hydrothermalis |
| 381 | 2626266 | 2626574 | + | NZ_CP065135.1 | Halomonas venusta |
| 382 | 1608976 | 1609272 | - | NZ_CP009654.1 | Francisella frigiditurris |
| 383 | 3256745 | 3257047 | + | NC_020888.1 | Thalassolituus oleivorans MIL-1 |
| 384 | 2344307 | 2344642 | + | NZ_AP018933.1 | Zymobacter palmae |
| 385 | 3523814 | 3524125 | + | NZ_CP021323.1 | Kushneria konosiri |
| 386 | 3371714 | 3372025 | - | NZ_CP021358.1 | Kushneria marisflavi |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP061527.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00381.21 | 0.94 | 363 | 1444.5 | same-strand | PTS HPr component phosphorylation site |
| 2 | PF03668.17 | 0.95 | 366 | 550 | same-strand | P-loop ATPase protein family |
| 3 | PF00359.24 | 0.94 | 363 | 21.0 | same-strand | Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 |
| 4 | PF04552.15 | 0.97 | 374 | 25 | same-strand | Sigma-54, DNA binding domain |
| 5 | PF04963.15 | 0.97 | 375 | 25.0 | same-strand | Sigma-54 factor, core binding domain |
| 6 | PF00309.22 | 0.95 | 366 | 25 | same-strand | Sigma-54 factor, Activator interacting domain (AID) |
| 7 | PF00005.29 | 0.96 | 370 | 1570 | same-strand | ABC transporter |
| 8 | PF12399.10 | 0.95 | 367 | 1570.0 | same-strand | Branched-chain amino acid ATP-binding cassette transporter |
| 9 | PF03968.16 | 0.96 | 371 | 2299.0 | same-strand | LptA/(LptD N-terminal domain) LPS transport protein |
| 10 | PF06835.15 | 0.96 | 370 | 2820 | same-strand | Lipopolysaccharide-assembly, LptC-related |
++ More..