Result : P0AFW9
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Protein rof |
| NCBI Accession ID | |
| Organism | Shigella flexneri |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | |
| Sequence | MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETRELRLDKITSFSHPEIGTVVVSES |
| Source of smORF | Swiss-Prot |
| Function | Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination. {ECO:0000250}. |
| Pubmed ID | 12384590 12704152 |
| Domain | CDD:415605 |
| Functional Category | Others |
| Uniprot ID | P0AFW9 |
| ORF Length (Amino Acid) | 84 |
++ More..
| Conservation Analysis |
No. of Species: 148
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3399353 | 3399607 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 2 | 204622 | 204876 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 3 | 213678 | 213932 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 4 | 217023 | 217277 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 5 | 3768921 | 3769175 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 6 | 216457 | 216711 | - | NZ_AP014857.1 | Escherichia albertii |
| 7 | 836388 | 836642 | - | NZ_LR134340.1 | Escherichia marmotae |
| 8 | 4920876 | 4921130 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 9 | 3645926 | 3646180 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 10 | 2437309 | 2437563 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 11 | 4684519 | 4684773 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 12 | 856010 | 856264 | - | NC_015968.1 | Enterobacter soli |
| 13 | 928753 | 929007 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 14 | 869079 | 869333 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 15 | 1015467 | 1015721 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 16 | 4227017 | 4227271 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 17 | 992030 | 992284 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 18 | 4500844 | 4501098 | + | NZ_CP054254.1 | Klebsiella variicola |
| 19 | 899511 | 899765 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 20 | 2940376 | 2940630 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 21 | 3409542 | 3409796 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 22 | 4953909 | 4954163 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 23 | 886459 | 886713 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 24 | 854876 | 855130 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 25 | 1645922 | 1646176 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 26 | 233662 | 233916 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 27 | 4010272 | 4010526 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 28 | 2653919 | 2654173 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 29 | 1386299 | 1386553 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 30 | 3671538 | 3671792 | - | NZ_CP033744.1 | Citrobacter freundii |
| 31 | 2458629 | 2458883 | + | NZ_CP038469.1 | Citrobacter tructae |
| 32 | 3730564 | 3730818 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 33 | 2733516 | 2733770 | - | NZ_CP026047.1 | Raoultella planticola |
| 34 | 4501652 | 4501906 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 35 | 4840418 | 4840672 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 36 | 4299832 | 4300086 | + | NZ_CP041247.1 | Raoultella electrica |
| 37 | 4018196 | 4018450 | + | NZ_CP023525.1 | Cedecea neteri |
| 38 | 2157727 | 2157981 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 39 | 915610 | 915864 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 40 | 4388637 | 4388891 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 41 | 698845 | 699099 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 42 | 3732934 | 3733188 | + | NZ_LR134201.1 | Cedecea lapagei |
| 43 | 2179139 | 2179393 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 44 | 4615119 | 4615373 | + | NZ_CP050508.1 | Raoultella terrigena |
| 45 | 3770034 | 3770294 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 46 | 3635470 | 3635730 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 47 | 3716286 | 3716540 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 48 | 3134446 | 3134700 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 49 | 902251 | 902505 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 50 | 4293000 | 4293254 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 51 | 2005828 | 2006082 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 52 | 2528425 | 2528679 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 53 | 3269285 | 3269539 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 54 | 2570465 | 2570719 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 55 | 900578 | 900832 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 56 | 2867262 | 2867516 | - | NZ_CP053416.1 | Salmonella bongori |
| 57 | 3338935 | 3339189 | + | NZ_CP015581.1 | Tatumella citrea |
| 58 | 4185483 | 4185737 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 59 | 3902057 | 3902311 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 60 | 280048 | 280302 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 61 | 3256258 | 3256512 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 62 | 907541 | 907795 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 63 | 3645881 | 3646135 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 64 | 3744673 | 3744927 | - | NZ_CP049115.1 | Pantoea stewartii |
| 65 | 3590610 | 3590819 | + | NZ_CP050150.1 | Hafnia alvei |
| 66 | 4598727 | 4598981 | - | NZ_CP067057.1 | Rahnella aceris |
| 67 | 996377 | 996637 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 68 | 1427434 | 1427688 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 69 | 1677818 | 1678072 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 70 | 3605845 | 3606099 | + | NZ_CP032487.1 | Yersinia hibernica |
| 71 | 1146530 | 1146784 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 72 | 3611058 | 3611312 | + | NZ_CP043727.1 | Yersinia canariae |
| 73 | 214399 | 214653 | + | NZ_CP007230.1 | Yersinia similis |
| 74 | 902898 | 903152 | - | NZ_CP046293.1 | Yersinia intermedia |
| 75 | 62881 | 63135 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 76 | 814847 | 815104 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 77 | 3229372 | 3229629 | + | NZ_CP038853.1 | Pantoea vagans |
| 78 | 1004760 | 1005017 | - | NZ_CP071320.1 | Serratia ureilytica |
| 79 | 3405623 | 3405880 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 80 | 4097574 | 4097831 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 81 | 335715 | 335972 | + | NZ_CP065640.1 | Serratia rubidaea |
| 82 | 955175 | 955435 | - | NZ_CP061511.1 | Mixta calida |
| 83 | 1061742 | 1062002 | - | NZ_CP026377.1 | Mixta gaviniae |
| 84 | 3291673 | 3291930 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 85 | 1206214 | 1206468 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 86 | 3846992 | 3847246 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 87 | 1824673 | 1824927 | + | NZ_CP009787.1 | Yersinia rohdei |
| 88 | 1266418 | 1266672 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 89 | 3664745 | 3664999 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 90 | 2886 | 3140 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 91 | 513615 | 513869 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 92 | 3450853 | 3451107 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 93 | 1173407 | 1173661 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 94 | 619495 | 619755 | + | NZ_CP019706.1 | Pantoea alhagi |
| 95 | 3086720 | 3086974 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 96 | 449115 | 449369 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 97 | 4107229 | 4107486 | + | NZ_LT906479.1 | Serratia ficaria |
| 98 | 2273997 | 2274254 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 99 | 829410 | 829664 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 100 | 3752535 | 3752792 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 101 | 1083056 | 1083310 | - | NZ_CP025799.1 | Dickeya zeae |
| 102 | 1652971 | 1653225 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 103 | 3585750 | 3586004 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 104 | 3297152 | 3297406 | + | NZ_LT615367.1 | Dickeya aquatica |
| 105 | 1143914 | 1144168 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 106 | 181721 | 181981 | - | NZ_CP028271.1 | Mixta intestinalis |
| 107 | 3253227 | 3253481 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 108 | 1163625 | 1163879 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 109 | 926359 | 926622 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 110 | 1019151 | 1019411 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 111 | 2218535 | 2218789 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 112 | 3108365 | 3108619 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 113 | 3705168 | 3705422 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 114 | 999436 | 999690 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 115 | 2033975 | 2034229 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 116 | 2823375 | 2823623 | + | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 117 | 1019251 | 1019511 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 118 | 2574893 | 2575153 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 119 | 1070165 | 1070374 | + | NZ_CP011104.1 | Photorhabdus thracensis |
| 120 | 3042132 | 3042386 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 121 | 899143 | 899403 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 122 | 2967912 | 2968160 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 123 | 998353 | 998607 | - | NZ_CP065534.1 | Lonsdalea populi |
| 124 | 3047978 | 3048238 | + | NZ_LR134531.1 | Pragia fontium |
| 125 | 780085 | 780345 | - | NZ_LS483470.1 | Leminorella richardii |
| 126 | 4226752 | 4227009 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 127 | 4180669 | 4180926 | + | NZ_LR134494.1 | Serratia quinivorans |
| 128 | 4154201 | 4154458 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 129 | 1016994 | 1017248 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 130 | 849331 | 849591 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 131 | 377574 | 377831 | + | NZ_CP011254.1 | Serratia fonticola |
| 132 | 4015619 | 4015882 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 133 | 751750 | 752016 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 134 | 793789 | 794055 | - | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 135 | 866232 | 866492 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 136 | 628987 | 629244 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 137 | 2875472 | 2875732 | + | NZ_CP016043.1 | Edwardsiella hoshinae |
| 138 | 4024998 | 4025261 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 139 | 2709478 | 2709744 | + | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 140 | 3758024 | 3758290 | + | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 141 | 3479257 | 3479520 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 142 | 3317492 | 3317755 | + | NZ_LS483422.1 | Providencia heimbachae |
| 143 | 1879617 | 1879880 | - | NZ_CP023536.1 | Providencia alcalifaciens |
| 144 | 3429746 | 3430009 | + | NZ_CP048796.1 | Providencia vermicola |
| 145 | 2833337 | 2833600 | + | NZ_CP031123.2 | Providencia huaxiensis |
| 146 | 1847000 | 1847263 | - | NZ_CP029736.1 | Providencia rettgeri |
| 147 | 739123 | 739332 | + | NZ_CP026364.1 | Proteus hauseri |
| 148 | 2462048 | 2462257 | + | NC_010554.1 | Proteus mirabilis HI4320 |
| 149 | 3027072 | 3027332 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP051548.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF17185.6 | 0.76 | 113 | 1388.0 | opposite-strand | NlpE C-terminal OB domain |
| 2 | PF04170.14 | 0.85 | 126 | 1387 | opposite-strand | NlpE N-terminal domain |
| 3 | PF00472.22 | 0.72 | 106 | 932 | opposite-strand | RF-1 domain |
| 4 | PF07152.14 | 0.82 | 122 | 400 | opposite-strand | YaeQ protein |
| 5 | PF06786.14 | 0.79 | 117 | -7.0 | same-strand | Uncharacterised protein family (UPF0253) |
| 6 | PF01171.22 | 0.99 | 146 | 84 | opposite-strand | PP-loop family |
| 7 | PF11734.10 | 0.99 | 146 | 84 | opposite-strand | TilS substrate C-terminal domain |
| 8 | PF09179.13 | 0.99 | 146 | 84 | opposite-strand | TilS substrate binding domain |
| 9 | PF00903.27 | 0.78 | 116 | 1413 | opposite-strand | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily |
| 10 | PF03711.17 | 0.63 | 93 | 1903.5 | opposite-strand | Orn/Lys/Arg decarboxylase, C-terminal domain |
| 11 | PF03255.16 | 0.76 | 112 | 4072 | opposite-strand | Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit |
| 12 | PF01276.22 | 0.62 | 92 | 1907 | opposite-strand | Orn/Lys/Arg decarboxylase, major domain |
| 13 | PF03709.17 | 0.61 | 91 | 1903.5 | opposite-strand | Orn/Lys/Arg decarboxylase, N-terminal domain |
| 14 | PF13669.8 | 0.78 | 115 | 1413.0 | opposite-strand | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily |
| 15 | PF00587.27 | 0.65 | 96 | 2136.0 | same-strand | tRNA synthetase class II core domain (G, H, P, S and T) |
| 16 | PF04073.17 | 0.65 | 96 | 2136.0 | same-strand | Aminoacyl-tRNA editing domain |
| 17 | PF03129.22 | 0.65 | 96 | 2136.0 | same-strand | Anticodon binding domain |
++ More..