Result : P0AFN1
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Phage shock protein B |
| NCBI Accession ID | AE005174.2 |
| Organism | Escherichia coli O157:H7 |
| Left | 2210325 |
| Right | 2210549 |
| Strand | - |
| Nucleotide Sequence | ATGAGCGCGCTATTTCTGGCTATTCCATTAACCATTTTTGTGCTGTTTGTTTTACCGATCTGGTTATGGCTGCATTACAGCAATCGTTCTGGTCGCAGTGAATTGTCGCAAAGTGAGCAGCAGCGATTAGCGCAACTGGCTGATGAAGCAAAACGGATGCGCGAACGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCTAA |
| Sequence | MSALFLAIPLTIFVLFVLPIWLWLHYSNRSGRSELSQSEQQRLAQLADEAKRMRERIQALESILDAEHPNWRDR |
| Source of smORF | Swiss-Prot |
| Function | The phage shock protein (psp) operon (pspABCDE) may play a significant role in the competition for survival under nutrient- or energy-limited conditions. PspB is involved in transcription regulation (By similarity). {ECO:0000250}. |
| Pubmed ID | 11206551 11258796 |
| Domain | CDD:414601 |
| Functional Category | Others |
| Uniprot ID | P0AFN1 |
| ORF Length (Amino Acid) | 74 |
++ More..
| Conservation Analysis |
No. of Species: 163
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1839962 | 1840186 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 2 | 1368801 | 1369025 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 3 | 1876757 | 1876981 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 4 | 1432058 | 1432282 | + | NZ_AP014857.1 | Escherichia albertii |
| 5 | 1362948 | 1363172 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 6 | 2369440 | 2369664 | - | NZ_LR134340.1 | Escherichia marmotae |
| 7 | 1346393 | 1346617 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 8 | 689591 | 689815 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 9 | 2560131 | 2560355 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 10 | 889251 | 889475 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 11 | 4709960 | 4710184 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 12 | 2774682 | 2774906 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 13 | 1813868 | 1814092 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 14 | 2514977 | 2515201 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 15 | 3968554 | 3968778 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 16 | 2990128 | 2990352 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 17 | 443568 | 443792 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 18 | 1781457 | 1781681 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 19 | 4239743 | 4239967 | - | NZ_CP053416.1 | Salmonella bongori |
| 20 | 2071853 | 2072077 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 21 | 4718795 | 4719019 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 22 | 352685 | 352909 | - | NZ_CP033744.1 | Citrobacter freundii |
| 23 | 1749452 | 1749676 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 24 | 2560989 | 2561213 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 25 | 1374684 | 1374908 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 26 | 2548083 | 2548307 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 27 | 1113072 | 1113296 | - | NZ_CP038469.1 | Citrobacter tructae |
| 28 | 4117464 | 4117688 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 29 | 2009930 | 2010154 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 30 | 2528250 | 2528474 | - | NC_015968.1 | Enterobacter soli |
| 31 | 3007356 | 3007580 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 32 | 1090769 | 1090993 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 33 | 1861842 | 1862066 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 34 | 1660730 | 1660954 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 35 | 2123823 | 2124047 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 36 | 2511769 | 2511990 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 37 | 2528694 | 2528918 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 38 | 2294371 | 2294595 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 39 | 2362388 | 2362612 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 40 | 2360694 | 2360918 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 41 | 2573747 | 2573971 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 42 | 545445 | 545669 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 43 | 2256014 | 2256238 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 44 | 2244655 | 2244879 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 45 | 3345703 | 3345927 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 46 | 2948989 | 2949213 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 47 | 2256426 | 2256650 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 48 | 3135314 | 3135538 | - | NZ_CP054254.1 | Klebsiella variicola |
| 49 | 3284001 | 3284225 | - | NZ_CP050508.1 | Raoultella terrigena |
| 50 | 1888510 | 1888734 | - | NZ_LR134201.1 | Cedecea lapagei |
| 51 | 3000071 | 3000295 | - | NZ_CP041247.1 | Raoultella electrica |
| 52 | 4043141 | 4043365 | + | NZ_CP026047.1 | Raoultella planticola |
| 53 | 3179526 | 3179750 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 54 | 3483986 | 3484210 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 55 | 2193498 | 2193725 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 56 | 2189436 | 2189660 | + | NZ_CP023525.1 | Cedecea neteri |
| 57 | 4062963 | 4063190 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 58 | 3295032 | 3295253 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 59 | 2538738 | 2538959 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 60 | 2650254 | 2650475 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 61 | 493374 | 493595 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 62 | 2338440 | 2338667 | + | NZ_CP071320.1 | Serratia ureilytica |
| 63 | 2064272 | 2064499 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 64 | 2768721 | 2768948 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 65 | 2818735 | 2818962 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 66 | 561326 | 561553 | - | NZ_CP049115.1 | Pantoea stewartii |
| 67 | 2611403 | 2611630 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 68 | 2254278 | 2254505 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 69 | 1958652 | 1958879 | + | NZ_CP038853.1 | Pantoea vagans |
| 70 | 2825273 | 2825500 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 71 | 2863876 | 2864103 | - | NZ_LR134494.1 | Serratia quinivorans |
| 72 | 1968561 | 1968788 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 73 | 3558932 | 3559159 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 74 | 1857336 | 1857563 | + | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 75 | 5477642 | 5477869 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 76 | 2047483 | 2047710 | - | NZ_CP023567.1 | Erwinia pyrifoliae |
| 77 | 2038675 | 2038902 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 78 | 2100300 | 2100527 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 79 | 80482 | 80709 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 80 | 1995402 | 1995629 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 81 | 2813006 | 2813233 | - | NZ_LT906479.1 | Serratia ficaria |
| 82 | 1941956 | 1942183 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 83 | 3606025 | 3606252 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 84 | 2226792 | 2227019 | + | NZ_CP043727.1 | Yersinia canariae |
| 85 | 1740758 | 1740985 | + | NZ_CP032487.1 | Yersinia hibernica |
| 86 | 2120598 | 2120825 | + | NZ_CP050150.1 | Hafnia alvei |
| 87 | 2430707 | 2430934 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 88 | 3810073 | 3810300 | + | NZ_CP065640.1 | Serratia rubidaea |
| 89 | 1717816 | 1718043 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 90 | 2284894 | 2285121 | - | NZ_CP061511.1 | Mixta calida |
| 91 | 478849 | 479076 | - | NZ_CP011078.1 | Yersinia ruckeri |
| 92 | 2385627 | 2385854 | - | NZ_CP026377.1 | Mixta gaviniae |
| 93 | 4936070 | 4936297 | - | NZ_CP011254.1 | Serratia fonticola |
| 94 | 2377911 | 2378138 | - | NZ_CP046293.1 | Yersinia intermedia |
| 95 | 337691 | 337918 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 96 | 3590379 | 3590603 | + | NZ_CP019706.1 | Pantoea alhagi |
| 97 | 4288430 | 4288654 | - | NZ_CP047495.1 | Pectobacterium brasiliense |
| 98 | 2800610 | 2800834 | - | NZ_CP065044.1 | Pectobacterium aroidearum |
| 99 | 1518219 | 1518443 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 100 | 2857760 | 2857984 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 101 | 1747104 | 1747331 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 102 | 2656440 | 2656664 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 103 | 3918298 | 3918525 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 104 | 2094772 | 2094996 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 105 | 2201380 | 2201604 | + | NZ_CP034938.1 | Pectobacterium odoriferum |
| 106 | 742949 | 743173 | - | NZ_CP009787.1 | Yersinia rohdei |
| 107 | 1271363 | 1271587 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 108 | 4493121 | 4493345 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 109 | 1722821 | 1723048 | - | NZ_CP067057.1 | Rahnella aceris |
| 110 | 1771842 | 1772069 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 111 | 1975391 | 1975621 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 112 | 1481716 | 1481943 | - | NZ_CP028271.1 | Mixta intestinalis |
| 113 | 3194854 | 3195084 | + | NZ_CP026364.1 | Proteus hauseri |
| 114 | 1379535 | 1379762 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 115 | 1552069 | 1552296 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 116 | 1453492 | 1453722 | - | NC_010554.1 | Proteus mirabilis HI4320 |
| 117 | 1218971 | 1219198 | + | NZ_CP060401.1 | Xenorhabdus nematophila |
| 118 | 1896319 | 1896546 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 119 | 1557792 | 1558019 | + | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 120 | 1984204 | 1984431 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 121 | 1678429 | 1678659 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 122 | 4261200 | 4261427 | - | NZ_CP007230.1 | Yersinia similis |
| 123 | 2448844 | 2449065 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 124 | 1965980 | 1966168 | + | NZ_LR134531.1 | Pragia fontium |
| 125 | 1896690 | 1896875 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 126 | 1852026 | 1852211 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 127 | 2062661 | 2062882 | + | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 128 | 2008669 | 2008896 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 129 | 2896698 | 2896925 | + | NZ_CP023009.1 | Lonsdalea britannica |
| 130 | 2775431 | 2775661 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 131 | 82178 | 82408 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 132 | 2149099 | 2149332 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 133 | 2136118 | 2136351 | - | NZ_CP015581.1 | Tatumella citrea |
| 134 | 1682667 | 1682894 | + | NZ_CP065534.1 | Lonsdalea populi |
| 135 | 1803960 | 1804187 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 136 | 2758360 | 2758587 | - | NZ_CP025799.1 | Dickeya zeae |
| 137 | 2522925 | 2523155 | - | NZ_LS483422.1 | Providencia heimbachae |
| 138 | 4967585 | 4967815 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 139 | 1983612 | 1983812 | - | NZ_LS483470.1 | Leminorella richardii |
| 140 | 3342377 | 3342607 | - | NZ_CP023536.1 | Providencia alcalifaciens |
| 141 | 2599900 | 2600130 | - | NZ_CP048796.1 | Providencia vermicola |
| 142 | 2827742 | 2827972 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 143 | 3026716 | 3026934 | - | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 144 | 2703165 | 2703395 | - | NZ_LT615367.1 | Dickeya aquatica |
| 145 | 4270118 | 4270336 | + | NZ_CP011104.1 | Photorhabdus thracensis |
| 146 | 2050410 | 2050640 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 147 | 2188456 | 2188683 | + | NC_012962.1 | Photorhabdus asymbiotica |
| 148 | 1666525 | 1666758 | - | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 149 | 1355928 | 1356161 | - | NZ_CP035688.1 | Vibrio metoecus |
| 150 | 959428 | 959661 | + | NZ_CP016414.1 | Vibrio scophthalmi |
| 151 | 894869 | 895102 | + | NZ_AP019657.1 | Vibrio ponticus |
| 152 | 2561977 | 2562207 | + | NZ_CP029736.1 | Providencia rettgeri |
| 153 | 1169288 | 1169518 | + | NZ_CP031123.2 | Providencia huaxiensis |
| 154 | 2406669 | 2406899 | + | NZ_CP014056.2 | Grimontia hollisae |
| 155 | 1563077 | 1563304 | + | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 156 | 787964 | 788182 | - | NC_006512.1 | Idiomarina loihiensis L2TR |
| 157 | 2928121 | 2928339 | - | NC_015554.1 | Alteromonas naphthalenivorans |
| 158 | 1233189 | 1233407 | + | NZ_CP008849.1 | Alteromonas australica |
| 159 | 1066982 | 1067212 | + | NZ_CP040021.1 | Salinivibrio kushneri |
| 160 | 2299550 | 2299768 | - | NZ_CP014322.1 | Alteromonas addita |
| 161 | 2558884 | 2559123 | - | NC_016041.1 | Glaciecola nitratireducens FR1064 |
| 162 | 3317514 | 3317753 | + | NZ_CP052766.1 | Alteromonas pelagimontana |
| 163 | 3993168 | 3993359 | + | NZ_CP034759.1 | Litorilituus sediminis |
| 164 | 884743 | 884925 | + | NZ_CP029347.1 | Saliniradius amylolyticus |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR134340.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00158.28 | 0.99 | 162 | 959 | opposite-strand | Sigma-54 interaction domain |
| 2 | PF14532.8 | 0.99 | 162 | 959 | opposite-strand | Sigma-54 interaction domain |
| 3 | PF07728.16 | 0.99 | 162 | 937.5 | opposite-strand | AAA domain (dynein-related subfamily) |
| 4 | PF02954.21 | 0.78 | 127 | 905.5 | opposite-strand | Bacterial regulatory protein, Fis family |
| 5 | PF04012.14 | 1.0 | 163 | 62.0 | same-strand | PspA/IM30 family |
| 6 | PF04024.14 | 1.0 | 163 | 0.0 | same-strand | PspC domain |
| 7 | PF04317.14 | 0.74 | 120 | 667.0 | same-strand | YcjX-like family, DUF463 |
| 8 | PF05128.14 | 0.74 | 120 | 2061.0 | same-strand | Domain of unknown function (DUF697) |
| 9 | PF00496.24 | 0.73 | 119 | 2157 | opposite-strand | Bacterial extracellular solute-binding proteins, family 5 Middle |
| 10 | PF00528.24 | 0.68 | 111 | 4203.0 | opposite-strand | Binding-protein-dependent transport system inner membrane component |
++ More..