Result : P0AF85
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YjfN |
| NCBI Accession ID | |
| Organism | Shigella flexneri |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | |
| Sequence | MKQLLASPSLQLVTYPASATAQSAEFASADCVTGLNEIGQISVSNISGDPQDVERIVALKADEQGASWYRIITMYEDQQPDNWRVQAILYA |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl11507. Profile Description: Protein of unknown function (DUF1471). hypothetical protein; Provisional |
| Pubmed ID | 12384590 12704152 |
| Domain | CDD:416304 |
| Functional Category | Others |
| Uniprot ID | P0AF85 |
| ORF Length (Amino Acid) | 91 |
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| Conservation Analysis |
No. of Species: 62
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 4520295 | 4520570 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 2 | 4416017 | 4416292 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 3 | 5269871 | 5270146 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 4 | 4451166 | 4451441 | - | NZ_AP014857.1 | Escherichia albertii |
| 5 | 3901507 | 3901782 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 6 | 442117 | 442392 | - | NZ_LR134340.1 | Escherichia marmotae |
| 7 | 3336553 | 3336828 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 8 | 3425020 | 3425295 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 9 | 1081057 | 1081332 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 10 | 584399 | 584674 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 11 | 1873790 | 1874065 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 12 | 2900197 | 2900472 | + | NZ_CP038469.1 | Citrobacter tructae |
| 13 | 4806767 | 4807042 | + | NZ_CP041247.1 | Raoultella electrica |
| 14 | 3207176 | 3207451 | - | NZ_CP033744.1 | Citrobacter freundii |
| 15 | 2219397 | 2219672 | - | NZ_CP026047.1 | Raoultella planticola |
| 16 | 2399649 | 2399924 | - | NZ_CP053416.1 | Salmonella bongori |
| 17 | 5517633 | 5517908 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 18 | 5099005 | 5099280 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 19 | 5522836 | 5523111 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 20 | 4621296 | 4621571 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 21 | 4111773 | 4112033 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 22 | 4873038 | 4873313 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 23 | 207236 | 207511 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 24 | 4755489 | 4755764 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 25 | 5036626 | 5036901 | + | NZ_CP054254.1 | Klebsiella variicola |
| 26 | 3527751 | 3527978 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 27 | 5125005 | 5125280 | + | NZ_CP050508.1 | Raoultella terrigena |
| 28 | 3085941 | 3086186 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 29 | 466455 | 466730 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 30 | 2974712 | 2974939 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 31 | 444684 | 444911 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 32 | 443004 | 443231 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 33 | 455441 | 455668 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 34 | 2153796 | 2154023 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 35 | 4081288 | 4081563 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 36 | 437408 | 437635 | - | NC_015968.1 | Enterobacter soli |
| 37 | 548788 | 549015 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 38 | 454806 | 455036 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 39 | 1449539 | 1449793 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 40 | 5393255 | 5393530 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 41 | 431870 | 432097 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 42 | 3911265 | 3911492 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 43 | 3632113 | 3632388 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 44 | 4723699 | 4723974 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 45 | 484912 | 485187 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 46 | 2660015 | 2660290 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 47 | 4375746 | 4375973 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 48 | 4199240 | 4199515 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 49 | 4185694 | 4185969 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 50 | 1206355 | 1206630 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 51 | 251512 | 251757 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 52 | 3969435 | 3969680 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 53 | 396976 | 397221 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 54 | 3882795 | 3883052 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 55 | 3714500 | 3714745 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 56 | 3790873 | 3791118 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 57 | 4015774 | 4016010 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 58 | 1727676 | 1727951 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 59 | 522424 | 522684 | - | NZ_CP050150.1 | Hafnia alvei |
| 60 | 3685974 | 3686249 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 61 | 370067 | 370303 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 62 | 431182 | 431457 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 63 | 371233 | 371469 | - | NZ_LR134494.1 | Serratia quinivorans |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_AP014857.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF18158.3 | 0.98 | 61 | 137.5 | opposite-strand | Adaptive response protein AidB N-terminal domain |
| 2 | PF00441.26 | 0.98 | 61 | 137.5 | opposite-strand | Acyl-CoA dehydrogenase, C-terminal domain |
| 3 | PF02770.21 | 0.98 | 61 | 137.5 | opposite-strand | Acyl-CoA dehydrogenase, middle domain |
| 4 | PF08028.13 | 0.98 | 61 | 137.5 | opposite-strand | Acyl-CoA dehydrogenase, C-terminal domain |
| 5 | PF07338.15 | 1.0 | 62 | 153.5 | same-strand | Protein of unknown function (DUF1471) |
| 6 | PF00588.21 | 0.68 | 42 | 3013.5 | opposite-strand | SpoU rRNA Methylase family |
| 7 | PF08032.14 | 0.68 | 42 | 3013.5 | opposite-strand | RNA 2'-O ribose methyltransferase substrate binding |
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