Result : P0AF46
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YjbE |
| NCBI Accession ID | AE014075.1 |
| Organism | Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) |
| Left | 4771579 |
| Right | 4771821 |
| Strand | + |
| Nucleotide Sequence | ATGAAAAAAGTTCTGTATGGCATTTTTGCCATATCTGCGCTTGCGGCGACTTCTGCGTGGGCTGCACCTGTACAGGTGGGCGAAGCGGCAGGATCGGCAGCAACGTCGGTTTCGGCGGGGAGTTCCTCCGCGACCAGCGTCAGCACCGTAAGCTCGGCGGTGGGTGTCGCGCTCGCGGCAACCGGTGGCGGTGATGGTTCTAATACCGGGACCACCACAACCACGACCACCAGTACCCAGTAA |
| Sequence | MKKVLYGIFAISALAATSAWAAPVQVGEAAGSAATSVSAGSSSATSVSTVSSAVGVALAATGGGDGSNTGTTTTTTTSTQ |
| Source of smORF | Swiss-Prot |
| Function | |
| Pubmed ID | 12471157 |
| Domain | |
| Functional Category | Others |
| Uniprot ID | P0AF46 |
| ORF Length (Amino Acid) | 80 |
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| Conservation Analysis |
No. of Species: 44
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 4031260 | 4031502 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 2 | 3202756 | 3202998 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 3 | 4235906 | 4236148 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 4 | 5089307 | 5089549 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 5 | 274044 | 274286 | + | NZ_LR134340.1 | Escherichia marmotae |
| 6 | 4353541 | 4353783 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 7 | 3620586 | 3620828 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 8 | 2849663 | 2849905 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 9 | 3448310 | 3448552 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 10 | 292504 | 292746 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 11 | 5090861 | 5091103 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 12 | 5635025 | 5635267 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 13 | 1378367 | 1378612 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 14 | 4129077 | 4129322 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 15 | 3767679 | 3767921 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 16 | 3850552 | 3850800 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 17 | 276949 | 277197 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 18 | 3914755 | 3915000 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 19 | 3092136 | 3092378 | - | NZ_CP038469.1 | Citrobacter tructae |
| 20 | 2765940 | 2766182 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 21 | 253515 | 253757 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 22 | 269425 | 269667 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 23 | 272875 | 273117 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 24 | 281726 | 281968 | + | NC_015968.1 | Enterobacter soli |
| 25 | 2334763 | 2335005 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 26 | 295291 | 295533 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 27 | 3270000 | 3270242 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 28 | 282566 | 282808 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 29 | 130832 | 131080 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 30 | 777535 | 777777 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 31 | 3902182 | 3902424 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 32 | 894974 | 895216 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 33 | 4043169 | 4043411 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 34 | 4442270 | 4442512 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 35 | 3835941 | 3836189 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 36 | 2188576 | 2188818 | + | NZ_CP053416.1 | Salmonella bongori |
| 37 | 2053028 | 2053270 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 38 | 3019475 | 3019717 | + | NZ_CP033744.1 | Citrobacter freundii |
| 39 | 274635 | 274877 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 40 | 4364657 | 4364899 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 41 | 115083 | 115325 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 42 | 4231967 | 4232209 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 43 | 4005763 | 4006011 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 44 | 4329521 | 4329772 | - | NZ_LR134201.1 | Cedecea lapagei |
| 45 | 4754959 | 4755210 | - | NZ_CP023525.1 | Cedecea neteri |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP057657.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00696.30 | 1.0 | 44 | 2459 | opposite-strand | Amino acid kinase family |
| 2 | PF01842.27 | 0.73 | 32 | 2589 | opposite-strand | ACT domain |
| 3 | PF00342.21 | 1.0 | 44 | 382 | same-strand | Phosphoglucose isomerase |
| 4 | PF11102.10 | 1.0 | 44 | 66 | same-strand | Group 4 capsule polysaccharide lipoprotein gfcB, YjbF |
| 5 | PF06251.13 | 0.98 | 43 | 701.0 | same-strand | Capsule biosynthesis GfcC |
| 6 | PF06082.13 | 0.95 | 42 | 1438 | same-strand | Exopolysaccharide biosynthesis protein YbjH |
++ More..