Result : P0ADE2
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YtfK |
| NCBI Accession ID | U00096.3 |
| Organism | Escherichia coli (strain K12) |
| Left | 4439587 |
| Right | 4439793 |
| Strand | + |
| Nucleotide Sequence | ATGAAAATTTTCCAACGGTACAACCCACTTCAGGTGGCGAAGTACGTAAAGATCCTGTTCCGTGGACGGTTATACATCAAGGACGTTGGCGCTTTTGAATTCGATAAGGGTAAGATTCTTATCCCAAAAGTGAAGGATAAGCTGCATTTGTCAGTGATGTCCGAAGTTAACCGTCAGGTTATGCGTCTGCAAACAGAGATGGCTTAA |
| Sequence | MKIFQRYNPLQVAKYVKILFRGRLYIKDVGAFEFDKGKILIPKVKDKLHLSVMSEVNRQVMRLQTEMA |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of pfam06526. Profile Description: Protein of unknown function (DUF1107). This family consists of several short, hypothetical bacterial proteins of unknown function. |
| Pubmed ID | 7610040 9278503 16738553 |
| Domain | CDD:399495 |
| Functional Category | Others |
| Uniprot ID | P0ADE2 |
| ORF Length (Amino Acid) | 68 |
++ More..
| Conservation Analysis |
No. of Species: 157
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3819549 | 3819755 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 2 | 474215 | 474421 | + | NZ_LR134340.1 | Escherichia marmotae |
| 3 | 4439587 | 4439793 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 4 | 5295177 | 5295383 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 5 | 4056837 | 4057043 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 6 | 1744719 | 1744925 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 7 | 3367379 | 3367585 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 8 | 4448187 | 4448393 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 9 | 4486073 | 4486279 | + | NZ_AP014857.1 | Escherichia albertii |
| 10 | 5491613 | 5491819 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 11 | 4732333 | 4732539 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 12 | 489501 | 489707 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 13 | 5013257 | 5013463 | - | NZ_CP054254.1 | Klebsiella variicola |
| 14 | 1848310 | 1848516 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 15 | 3232656 | 3232862 | + | NZ_CP033744.1 | Citrobacter freundii |
| 16 | 5493573 | 5493779 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 17 | 5368949 | 5369155 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 18 | 477549 | 477755 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 19 | 462115 | 462321 | + | NC_015968.1 | Enterobacter soli |
| 20 | 3552284 | 3552490 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 21 | 2635715 | 2635921 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 22 | 4855888 | 4856094 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 23 | 224595 | 224801 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 24 | 4643400 | 4643606 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 25 | 456494 | 456700 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 26 | 467863 | 468069 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 27 | 479072 | 479278 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 28 | 2071724 | 2071930 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 29 | 472669 | 472875 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 30 | 572849 | 573055 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 31 | 2422434 | 2422640 | + | NZ_CP053416.1 | Salmonella bongori |
| 32 | 2866544 | 2866750 | - | NZ_CP038469.1 | Citrobacter tructae |
| 33 | 3367368 | 3367574 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 34 | 4699619 | 4699825 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 35 | 1480511 | 1480717 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 36 | 3651565 | 3651771 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 37 | 504342 | 504548 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 38 | 567474 | 567680 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 39 | 4784689 | 4784895 | - | NZ_CP041247.1 | Raoultella electrica |
| 40 | 1098097 | 1098303 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 41 | 2234789 | 2234995 | + | NZ_CP026047.1 | Raoultella planticola |
| 42 | 5076905 | 5077111 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 43 | 2999362 | 2999568 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 44 | 3061352 | 3061558 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 45 | 4089471 | 4089677 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 46 | 4346153 | 4346359 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 47 | 3986907 | 3987113 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 48 | 414369 | 414575 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 49 | 3697174 | 3697380 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 50 | 3931727 | 3931933 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 51 | 3451050 | 3451256 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 52 | 268931 | 269137 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 53 | 5109992 | 5110198 | - | NZ_CP050508.1 | Raoultella terrigena |
| 54 | 3673137 | 3673343 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 55 | 4000766 | 4000972 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 56 | 4168041 | 4168247 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 57 | 3865491 | 3865697 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 58 | 3773516 | 3773722 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 59 | 1190414 | 1190620 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 60 | 4173679 | 4173885 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 61 | 4079276 | 4079482 | - | NZ_LR134201.1 | Cedecea lapagei |
| 62 | 4363870 | 4364076 | - | NZ_CP023525.1 | Cedecea neteri |
| 63 | 563194 | 563400 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 64 | 3227096 | 3227302 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 65 | 3387475 | 3387681 | - | NZ_CP023567.1 | Erwinia pyrifoliae |
| 66 | 3283018 | 3283224 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 67 | 3313572 | 3313778 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 68 | 2337458 | 2337664 | - | NZ_CP049115.1 | Pantoea stewartii |
| 69 | 1924308 | 1924514 | + | NZ_CP065640.1 | Serratia rubidaea |
| 70 | 559502 | 559708 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 71 | 3511916 | 3512122 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 72 | 559258 | 559464 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 73 | 569357 | 569563 | + | NZ_CP038853.1 | Pantoea vagans |
| 74 | 2135540 | 2135746 | + | NZ_CP019706.1 | Pantoea alhagi |
| 75 | 1769745 | 1769951 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 76 | 523171 | 523377 | + | NZ_LT906479.1 | Serratia ficaria |
| 77 | 3731930 | 3732136 | - | NZ_CP061511.1 | Mixta calida |
| 78 | 3953994 | 3954200 | - | NZ_CP026377.1 | Mixta gaviniae |
| 79 | 534778 | 534984 | + | NZ_CP050150.1 | Hafnia alvei |
| 80 | 380628 | 380834 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 81 | 381013 | 381219 | + | NZ_LR134494.1 | Serratia quinivorans |
| 82 | 4131839 | 4132045 | + | NZ_CP067057.1 | Rahnella aceris |
| 83 | 390920 | 391126 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 84 | 441739 | 441945 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 85 | 3325867 | 3326073 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 86 | 3096633 | 3096839 | - | NZ_CP028271.1 | Mixta intestinalis |
| 87 | 2150439 | 2150645 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 88 | 534667 | 534870 | + | NZ_CP043727.1 | Yersinia canariae |
| 89 | 434037 | 434243 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 90 | 3182373 | 3182576 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 91 | 3367674 | 3367877 | + | NZ_CP009787.1 | Yersinia rohdei |
| 92 | 2049402 | 2049608 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 93 | 4203669 | 4203872 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 94 | 1298055 | 1298261 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 95 | 2345122 | 2345328 | + | NZ_CP011254.1 | Serratia fonticola |
| 96 | 266359 | 266565 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 97 | 618886 | 619092 | + | NZ_CP065534.1 | Lonsdalea populi |
| 98 | 4644938 | 4645144 | - | NZ_CP071320.1 | Serratia ureilytica |
| 99 | 4861601 | 4861807 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 100 | 2625370 | 2625576 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 101 | 472400 | 472603 | + | NZ_CP032487.1 | Yersinia hibernica |
| 102 | 404118 | 404324 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 103 | 4190315 | 4190527 | - | NZ_CP046293.1 | Yersinia intermedia |
| 104 | 3012778 | 3012984 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 105 | 3995988 | 3996194 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 106 | 1116259 | 1116465 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 107 | 900902 | 901108 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 108 | 3951837 | 3952043 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 109 | 3915172 | 3915378 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 110 | 3808116 | 3808322 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 111 | 919185 | 919391 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 112 | 970334 | 970540 | - | NZ_CP065044.1 | Pectobacterium aroidearum |
| 113 | 2761196 | 2761402 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 114 | 166509 | 166715 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 115 | 662763 | 662969 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 116 | 3763540 | 3763746 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 117 | 2568421 | 2568627 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 118 | 892507 | 892713 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 119 | 3989004 | 3989210 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 120 | 102600 | 102806 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 121 | 851802 | 852008 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 122 | 3748064 | 3748270 | - | NZ_CP025799.1 | Dickeya zeae |
| 123 | 3031187 | 3031393 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 124 | 4044558 | 4044770 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 125 | 2362798 | 2363004 | + | NZ_CP011104.1 | Photorhabdus thracensis |
| 126 | 3612016 | 3612222 | - | NZ_LT615367.1 | Dickeya aquatica |
| 127 | 3956503 | 3956709 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 128 | 5320931 | 5321137 | - | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 129 | 2170514 | 2170726 | + | NZ_CP007230.1 | Yersinia similis |
| 130 | 927177 | 927383 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 131 | 345243 | 345449 | + | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 132 | 4723808 | 4724014 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 133 | 421107 | 421313 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 134 | 3632471 | 3632677 | - | NZ_CP015581.1 | Tatumella citrea |
| 135 | 3016738 | 3016944 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 136 | 3367662 | 3367868 | - | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 137 | 1830267 | 1830473 | + | NZ_CP026364.1 | Proteus hauseri |
| 138 | 3712406 | 3712612 | + | NC_010554.1 | Proteus mirabilis HI4320 |
| 139 | 3269147 | 3269353 | - | NZ_LS483470.1 | Leminorella richardii |
| 140 | 253640 | 253846 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 141 | 1101262 | 1101468 | + | NZ_CP029736.1 | Providencia rettgeri |
| 142 | 4049269 | 4049475 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 143 | 485162 | 485368 | + | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 144 | 3435405 | 3435611 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 145 | 430377 | 430583 | + | NZ_LR134531.1 | Pragia fontium |
| 146 | 3973474 | 3973680 | - | NZ_LS483422.1 | Providencia heimbachae |
| 147 | 510965 | 511171 | + | NZ_CP029185.2 | Limnobaculum parvum |
| 148 | 1321771 | 1321977 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 149 | 3950330 | 3950536 | - | NZ_CP048796.1 | Providencia vermicola |
| 150 | 2504891 | 2505097 | - | NZ_CP040021.1 | Salinivibrio kushneri |
| 151 | 1651387 | 1651590 | + | NZ_CP014056.2 | Grimontia hollisae |
| 152 | 3849419 | 3849628 | - | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 153 | 3132599 | 3132808 | - | NZ_CP071325.1 | Photobacterium ganghwense |
| 154 | 466827 | 467000 | + | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 155 | 305250 | 305456 | + | NZ_AP018689.1 | Vibrio aphrogenes |
| 156 | 339699 | 339905 | + | NZ_AP018685.1 | Vibrio rumoiensis |
| 157 | 2591550 | 2591717 | - | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 158 | 1734180 | 1734371 | + | NZ_CP028897.1 | Dongshaea marina |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR134340.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF06094.14 | 0.71 | 111 | 8006.5 | same-strand | Gamma-glutamyl cyclotransferase, AIG2-like |
| 2 | PF04357.15 | 0.82 | 128 | 4235 | same-strand | TamB, inner membrane protein subunit of TAM complex |
| 3 | PF01103.25 | 0.76 | 120 | 2489 | same-strand | Omp85 superfamily domain |
| 4 | PF17243.4 | 0.84 | 132 | 2507 | same-strand | POTRA domain TamA domain 1 |
| 5 | PF01625.23 | 0.78 | 122 | 1620 | opposite-strand | Peptide methionine sulfoxide reductase |
| 6 | PF01595.22 | 0.92 | 145 | 82.0 | opposite-strand | Cyclin M transmembrane N-terminal domain |
| 7 | PF03471.19 | 0.92 | 145 | 82.0 | opposite-strand | Transporter associated domain |
| 8 | PF09695.12 | 0.83 | 130 | 325 | opposite-strand | Bacterial protein of unknown function (YtfJ HI0045) |
| 9 | PF02872.20 | 0.72 | 113 | 1836.5 | opposite-strand | 5'-nucleotidase, C-terminal domain |
| 10 | PF00149.30 | 0.72 | 113 | 1836.5 | opposite-strand | Calcineurin-like phosphoesterase |
| 11 | PF00459.27 | 0.89 | 140 | 879 | same-strand | Inositol monophosphatase family |
++ More..