Result : A4VNB1
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Protein SlyX homolog |
| NCBI Accession ID | CP000304.1 |
| Organism | Pseudomonas stutzeri (strain A1501) |
| Left | 3038592 |
| Right | 3038807 |
| Strand | - |
| Nucleotide Sequence | ATGATTGTGGATCTTGAATCGCGAGTAACGGACCTGGAGACGCGTCTGGCATTTCAGGATGACACCATCCAGGCGTTGAACGATGTACTGGTCGAGCAGCAGCGACTGGTGGAGCGGCTTCAGCTCCAGCTGGTCGCACTGGCGAAGCGTCAGGAGGAGATGCAGGGTTCGCTGGGTGCTGCCGATGAGGACGAGGCGCCGCCACCTCATTATTGA |
| Sequence | MIVDLESRVTDLETRLAFQDDTIQALNDVLVEQQRLVERLQLQLVALAKRQEEMQGSLGAADEDEAPPPHY |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl01090. Profile Description: SlyX. hypothetical protein; Provisional |
| Pubmed ID | 18495935 |
| Domain | CDD:412736 |
| Functional Category | Others |
| Uniprot ID | A4VNB1 |
| ORF Length (Amino Acid) | 71 |
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| Conservation Analysis |
No. of Species: 59
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2173107 | 2173313 | - | NZ_CP014262.1 | Pseudomonas corrugata |
| 2 | 2989589 | 2989798 | - | NZ_CP011835.1 | Azotobacter chroococcum |
| 3 | 4877444 | 4877650 | - | NZ_CP029608.1 | Pseudomonas kribbensis |
| 4 | 1847346 | 1847561 | + | NC_012560.1 | Azotobacter vinelandii DJ |
| 5 | 535895 | 536101 | - | NZ_CP014205.2 | Pseudomonas glycinae |
| 6 | 5090860 | 5091066 | - | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 7 | 5134101 | 5134313 | - | NZ_CP062252.1 | Pseudomonas allokribbensis |
| 8 | 5624317 | 5624523 | + | NZ_CP048810.1 | Pseudomonas bijieensis |
| 9 | 5294003 | 5294209 | - | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 10 | 4781504 | 4781710 | - | NZ_AP014862.1 | Pseudomonas furukawaii |
| 11 | 1501241 | 1501447 | + | NZ_CP070503.1 | Pseudomonas atacamensis |
| 12 | 5321587 | 5321793 | - | NZ_CP035088.1 | Pseudomonas viciae |
| 13 | 5533624 | 5533830 | - | NZ_CP051487.1 | Pseudomonas umsongensis |
| 14 | 4356763 | 4356972 | + | NZ_CP045302.1 | Azotobacter salinestris |
| 15 | 5292928 | 5293134 | - | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 16 | 3446042 | 3446230 | - | NZ_CP062158.2 | Pseudomonas lundensis |
| 17 | 4654597 | 4654803 | - | NZ_CP043311.1 | Pseudomonas lalkuanensis |
| 18 | 4472657 | 4472863 | - | NZ_CP046621.1 | Pseudomonas alkylphenolica |
| 19 | 4824267 | 4824473 | - | NZ_CP023272.1 | Pseudomonas lurida |
| 20 | 4745397 | 4745597 | - | NZ_CP054205.1 | Pseudomonas rhodesiae |
| 21 | 1184753 | 1184941 | + | NZ_CP012400.2 | Pseudomonas yamanorum |
| 22 | 1510694 | 1510873 | + | NZ_CP071706.1 | Pseudomonas donghuensis |
| 23 | 5069541 | 5069747 | - | NZ_CP027756.1 | Pseudomonas synxantha |
| 24 | 5478392 | 5478598 | - | NZ_CP018420.1 | Pseudomonas veronii |
| 25 | 4894235 | 4894441 | - | NZ_CP010896.1 | Pseudomonas simiae |
| 26 | 5239600 | 5239806 | - | NZ_CP014870.1 | Pseudomonas silesiensis |
| 27 | 4631598 | 4631807 | - | NZ_AP022642.1 | Pseudomonas otitidis |
| 28 | 1440017 | 1440223 | + | NZ_CP068551.1 | Pseudomonas khazarica |
| 29 | 5344791 | 5344997 | - | NZ_LS999205.1 | Pseudomonas protegens CHA0 |
| 30 | 4496624 | 4496809 | - | NZ_CP049044.1 | Pseudomonas psychrophila |
| 31 | 3681186 | 3681392 | + | NZ_CP070505.1 | Pseudomonas toyotomiensis |
| 32 | 3864151 | 3864336 | - | NZ_CP060009.1 | Pseudomonas sediminis |
| 33 | 3125840 | 3126025 | - | NZ_CP012676.1 | Pseudomonas versuta |
| 34 | 1046462 | 1046671 | + | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 35 | 4571220 | 4571426 | - | NZ_CP027723.1 | Pseudomonas orientalis |
| 36 | 5417506 | 5417712 | + | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 37 | 4911031 | 4911216 | - | NZ_CP056030.1 | Pseudomonas eucalypticola |
| 38 | 3693725 | 3693931 | - | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 39 | 1738115 | 1738327 | + | NZ_CP067022.1 | Pseudomonas cannabina pv. alisalensis |
| 40 | 2216696 | 2216905 | + | NZ_CP048833.1 | Pseudomonas multiresinivorans |
| 41 | 1720748 | 1720933 | + | NZ_CP068034.2 | Pseudomonas syringae |
| 42 | 4850192 | 4850398 | + | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 43 | 4504553 | 4504759 | - | NZ_CP022562.1 | Pseudomonas monteilii |
| 44 | 1380504 | 1380710 | + | NZ_CP047698.1 | Pseudomonas knackmussii |
| 45 | 225855 | 226067 | + | NZ_CP009365.1 | Pseudomonas soli |
| 46 | 1846730 | 1846936 | + | NZ_CP014158.1 | Pseudomonas citronellolis |
| 47 | 1597797 | 1597982 | + | NZ_CP042804.1 | Pseudomonas amygdali pv. tabaci str. ATCC 11528 |
| 48 | 1088278 | 1088484 | + | NZ_CP009533.1 | Pseudomonas rhizosphaerae |
| 49 | 1576081 | 1576287 | + | NZ_LR215729.2 | Pseudomonas marincola |
| 50 | 1327299 | 1327505 | + | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 51 | 4395753 | 4395959 | - | NC_008027.1 | Pseudomonas entomophila L48 |
| 52 | 4491291 | 4491497 | - | NC_004578.1 | Pseudomonas syringae pv. tomato str. DC3000 |
| 53 | 1459641 | 1459853 | + | NZ_CP007039.1 | Pseudomonas cichorii JBC1 |
| 54 | 4362947 | 4363159 | - | NZ_CP024159.1 | Pseudomonas mosselii |
| 55 | 1102853 | 1103059 | - | NZ_CP012362.1 | Oblitimonas alkaliphila |
| 56 | 4508567 | 4508746 | - | NZ_CP044399.1 | Moritella marina ATCC 15381 |
| 57 | 806873 | 807064 | - | NZ_LR134510.1 | Actinobacillus delphinicola |
| 58 | 3585436 | 3585615 | - | NZ_LS483250.1 | Moritella yayanosii |
| 59 | 734895 | 735110 | - | NZ_CP012621.1 | Zobellella denitrificans |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP014262.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00152.22 | 0.83 | 49 | 2500 | same-strand | tRNA synthetases class II (D, K and N) |
| 2 | PF02938.16 | 0.83 | 49 | 2500 | same-strand | GAD domain |
| 3 | PF01336.27 | 0.83 | 49 | 2500 | same-strand | OB-fold nucleic acid binding domain |
| 4 | PF13467.8 | 0.61 | 36 | 1709.5 | same-strand | Ribbon-helix-helix domain |
| 5 | PF00210.26 | 0.75 | 44 | 1083.0 | same-strand | Ferritin-like domain |
| 6 | PF00313.24 | 0.88 | 52 | 67.5 | opposite-strand | 'Cold-shock' DNA-binding domain |
| 7 | PF01230.25 | 0.93 | 55 | 4 | same-strand | HIT domain |
| 8 | PF03573.15 | 0.88 | 52 | 1234.5 | opposite-strand | outer membrane porin, OprD family |
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