Result : P0AD75
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Phenylalanyl--tRNA ligase operon leader peptide (pheST attenuator peptide) |
| NCBI Accession ID | AE014075.1 |
| Organism | Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) |
| Left | 1955194 |
| Right | 1955238 |
| Strand | - |
| Nucleotide Sequence | ATGAATGCTGCTATTTTCCGCTTCTTTTTTTACTTTAGCACCTGA |
| Sequence | MNAAIFRFFFYFST |
| Source of smORF | Swiss-Prot |
| Function | |
| Pubmed ID | 12471157 |
| Domain | |
| Functional Category | Others |
| Uniprot ID | P0AD75 |
| ORF Length (Amino Acid) | 14 |
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| Conservation Analysis |
No. of Species: 104
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1733612 | 1733656 | - | NZ_AP014857.1 | Escherichia albertii |
| 2 | 2132761 | 2132805 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 3 | 2191645 | 2191689 | + | NZ_CP041247.1 | Raoultella electrica |
| 4 | 670880 | 670924 | + | NZ_CP038469.1 | Citrobacter tructae |
| 5 | 4818271 | 4818315 | + | NZ_CP033744.1 | Citrobacter freundii |
| 6 | 633080 | 633124 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 7 | 1861261 | 1861305 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 8 | 1892787 | 1892831 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 9 | 1424598 | 1424642 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 10 | 252183 | 252227 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 11 | 1579242 | 1579286 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 12 | 2101259 | 2101303 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 13 | 2129778 | 2129822 | + | NZ_CP054254.1 | Klebsiella variicola |
| 14 | 2077924 | 2077968 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 15 | 2271844 | 2271888 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 16 | 2491755 | 2491799 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 17 | 2279432 | 2279476 | + | NZ_CP050508.1 | Raoultella terrigena |
| 18 | 3159450 | 3159494 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 19 | 3049016 | 3049060 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 20 | 2142411 | 2142455 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 21 | 2439578 | 2439622 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 22 | 4997916 | 4997960 | - | NZ_CP026047.1 | Raoultella planticola |
| 23 | 2059077 | 2059121 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 24 | 2399076 | 2399120 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 25 | 3426869 | 3426913 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 26 | 2687232 | 2687276 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 27 | 3125549 | 3125593 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 28 | 3914546 | 3914590 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 29 | 1435307 | 1435351 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 30 | 3572888 | 3572932 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 31 | 974622 | 974666 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 32 | 2102434 | 2102478 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 33 | 1023242 | 1023286 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 34 | 1415488 | 1415532 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 35 | 1130982 | 1131026 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 36 | 3824614 | 3824658 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 37 | 1921152 | 1921196 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 38 | 1887484 | 1887528 | + | NC_015968.1 | Enterobacter soli |
| 39 | 2790074 | 2790118 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 40 | 1665789 | 1665833 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 41 | 1926048 | 1926092 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 42 | 2544146 | 2544190 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 43 | 2647111 | 2647155 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 44 | 1799226 | 1799270 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 45 | 1547738 | 1547782 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 46 | 336507 | 336551 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 47 | 1959889 | 1959933 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 48 | 2631452 | 2631496 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 49 | 3827334 | 3827378 | + | NZ_CP053416.1 | Salmonella bongori |
| 50 | 4389094 | 4389138 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 51 | 787876 | 787920 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 52 | 2030266 | 2030310 | + | NZ_LR134340.1 | Escherichia marmotae |
| 53 | 1955886 | 1955930 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 54 | 3653580 | 3653624 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 55 | 1648971 | 1649015 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 56 | 1545371 | 1545415 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 57 | 1867483 | 1867527 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 58 | 2330018 | 2330062 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 59 | 2167368 | 2167412 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 60 | 1812596 | 1812640 | - | NZ_CP067057.1 | Rahnella aceris |
| 61 | 2087834 | 2087878 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 62 | 1716887 | 1716931 | + | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 63 | 1841649 | 1841693 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 64 | 2930126 | 2930170 | - | NZ_CP023525.1 | Cedecea neteri |
| 65 | 2692846 | 2692890 | - | NZ_LR134201.1 | Cedecea lapagei |
| 66 | 1807640 | 1807684 | + | NZ_CP015581.1 | Tatumella citrea |
| 67 | 2293094 | 2293138 | - | NZ_CP038853.1 | Pantoea vagans |
| 68 | 1762567 | 1762611 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 69 | 1041426 | 1041470 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 70 | 1819010 | 1819054 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 71 | 3870352 | 3870396 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 72 | 3481315 | 3481359 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 73 | 1732296 | 1732340 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 74 | 2231453 | 2231497 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 75 | 2510019 | 2510063 | - | NZ_CP025799.1 | Dickeya zeae |
| 76 | 2348127 | 2348171 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 77 | 5159918 | 5159962 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 78 | 172443 | 172487 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 79 | 2650762 | 2650806 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 80 | 2299030 | 2299074 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 81 | 2592655 | 2592699 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 82 | 4762159 | 4762203 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 83 | 2518916 | 2518960 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 84 | 2556353 | 2556397 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 85 | 2615869 | 2615913 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 86 | 146182 | 146226 | + | NZ_CP049115.1 | Pantoea stewartii |
| 87 | 1835119 | 1835163 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 88 | 2298262 | 2298306 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 89 | 1946475 | 1946519 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 90 | 3622658 | 3622702 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 91 | 1787629 | 1787673 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 92 | 1442867 | 1442911 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 93 | 1814204 | 1814248 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 94 | 2026268 | 2026312 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 95 | 2262380 | 2262424 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 96 | 1761805 | 1761849 | + | NZ_LS483470.1 | Leminorella richardii |
| 97 | 3613970 | 3614014 | + | NZ_CP065640.1 | Serratia rubidaea |
| 98 | 2236488 | 2236532 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 99 | 2429951 | 2429995 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 100 | 3409635 | 3409679 | - | NZ_CP023536.1 | Providencia alcalifaciens |
| 101 | 3849729 | 3849773 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 102 | 2281021 | 2281065 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 103 | 2827886 | 2827930 | - | NZ_CP071320.1 | Serratia ureilytica |
| 104 | 2172121 | 2172165 | + | NZ_CP050150.1 | Hafnia alvei |
| 105 | 1066116 | 1066160 | + | NZ_CP031123.2 | Providencia huaxiensis |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_AP014857.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01032.20 | 0.63 | 66 | 3949 | same-strand | FecCD transport family |
| 2 | PF00216.23 | 1.0 | 104 | 3554 | same-strand | Bacterial DNA-binding protein |
| 3 | PF03483.19 | 1.0 | 104 | 1162 | same-strand | B3/4 domain |
| 4 | PF17759.3 | 1.0 | 104 | 1162 | same-strand | Phenylalanyl tRNA synthetase beta chain CLM domain |
| 5 | PF03147.16 | 1.0 | 104 | 1162 | same-strand | Ferredoxin-fold anticodon binding domain |
| 6 | PF01588.22 | 1.0 | 104 | 1162 | same-strand | Putative tRNA binding domain |
| 7 | PF03484.17 | 1.0 | 104 | 1162 | same-strand | tRNA synthetase B5 domain |
| 8 | PF01409.22 | 1.0 | 104 | 164 | same-strand | tRNA synthetases class II core domain (F) |
| 9 | PF02912.20 | 0.99 | 103 | 164.0 | same-strand | Aminoacyl tRNA synthetase class II, N-terminal domain |
| 10 | PF00453.20 | 1.0 | 104 | 124 | same-strand | Ribosomal protein L20 |
| 11 | PF01632.21 | 1.0 | 104 | 531 | same-strand | Ribosomal protein L35 |
| 12 | PF00707.24 | 1.0 | 104 | 825 | same-strand | Translation initiation factor IF-3, C-terminal domain |
| 13 | PF00587.27 | 1.0 | 104 | 1371 | same-strand | tRNA synthetase class II core domain (G, H, P, S and T) |
| 14 | PF03129.22 | 1.0 | 104 | 1371 | same-strand | Anticodon binding domain |
| 15 | PF07973.16 | 1.0 | 104 | 1371 | same-strand | Threonyl and Alanyl tRNA synthetase second additional domain |
| 16 | PF02824.23 | 1.0 | 104 | 1371 | same-strand | TGS domain |
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