Result : P0AD33
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | UPF0381 protein YfcZ |
| NCBI Accession ID | U00096.3 |
| Organism | Escherichia coli (strain K12) |
| Left | 2460650 |
| Right | 2460934 |
| Strand | - |
| Nucleotide Sequence | ATGAGTAAATGTAGTGCTGATGAAACCCCGGTTTGCTGCTGTATGGATGTTGGCACCATTATGGACAACTCCGACTGCACCGCGTCTTACAGCCGCGTGTTTGCAAACCGCGCAGAAGCAGAGCAAACGCTGGCGGCGCTGACTGAAAAAGCCCGTAGCGTGGAATCTGAACCTTGCAAAATCACCCCGACTTTCACTGAAGAGTCTGACGGTGTGCGCCTGGATATCGATTTCACTTTTGCCTGCGAAGCTGAAATGCTGATTTTCCAGCTGGGTCTGCGTTAA |
| Sequence | MSKCSADETPVCCCMDVGTIMDNSDCTASYSRVFANRAEAEQTLAALTEKARSVESEPCKITPTFTEESDGVRLDIDFTFACEAEMLIFQLGLR |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl11449. Profile Description: Protein of unknown function (DUF406). These small proteins are approximately 100 amino acids in length and appear to be found only in gamma proteobacteria. The function of this protein family is unknown. [Hypothetical proteins, Conserved] |
| Pubmed ID | 9205837 9278503 16738553 |
| Domain | CDD:416274 |
| Functional Category | Others |
| Uniprot ID | P0AD33 |
| ORF Length (Amino Acid) | 94 |
++ More..
| Conservation Analysis |
No. of Species: 153
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2997964 | 2998248 | - | NZ_LR134340.1 | Escherichia marmotae |
| 2 | 2460650 | 2460934 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 3 | 2462184 | 2462468 | - | NZ_AP014857.1 | Escherichia albertii |
| 4 | 3187198 | 3187482 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 5 | 1263981 | 1264265 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 6 | 2469611 | 2469895 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 7 | 2899918 | 2900202 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 8 | 4698206 | 4698490 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 9 | 2161134 | 2161418 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 10 | 2501739 | 2502023 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 11 | 464149 | 464433 | - | NZ_CP053416.1 | Salmonella bongori |
| 12 | 3926087 | 3926371 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 13 | 1141434 | 1141718 | - | NZ_CP033744.1 | Citrobacter freundii |
| 14 | 4337886 | 4338170 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 15 | 430897 | 431181 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 16 | 1430590 | 1430874 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 17 | 21271 | 21555 | + | NZ_CP038469.1 | Citrobacter tructae |
| 18 | 3542190 | 3542474 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 19 | 240036 | 240320 | - | NZ_CP026047.1 | Raoultella planticola |
| 20 | 1641576 | 1641860 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 21 | 1684360 | 1684644 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 22 | 1449213 | 1449497 | + | NZ_CP041247.1 | Raoultella electrica |
| 23 | 4600192 | 4600476 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 24 | 1438700 | 1438984 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 25 | 1460546 | 1460830 | + | NZ_CP054254.1 | Klebsiella variicola |
| 26 | 3829157 | 3829441 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 27 | 4799324 | 4799608 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 28 | 1635658 | 1635942 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 29 | 2998827 | 2999111 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 30 | 3378461 | 3378745 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 31 | 1417188 | 1417472 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 32 | 2048438 | 2048722 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 33 | 691696 | 691980 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 34 | 3318537 | 3318821 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 35 | 187778 | 188062 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 36 | 4662390 | 4662674 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 37 | 1505701 | 1505985 | + | NZ_CP050508.1 | Raoultella terrigena |
| 38 | 1370192 | 1370476 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 39 | 3004419 | 3004703 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 40 | 3323128 | 3323412 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 41 | 3433882 | 3434166 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 42 | 3237748 | 3238032 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 43 | 2580852 | 2581136 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 44 | 3964458 | 3964742 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 45 | 3294756 | 3295040 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 46 | 3604071 | 3604355 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 47 | 3280913 | 3281197 | - | NC_015968.1 | Enterobacter soli |
| 48 | 4835592 | 4835876 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 49 | 1414587 | 1414871 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 50 | 1253592 | 1253876 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 51 | 1310984 | 1311268 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 52 | 1070421 | 1070705 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 53 | 3151238 | 3151522 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 54 | 2837918 | 2838214 | + | NZ_CP019706.1 | Pantoea alhagi |
| 55 | 929799 | 930083 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 56 | 3179785 | 3180081 | - | NZ_CP026377.1 | Mixta gaviniae |
| 57 | 1263498 | 1263782 | + | NZ_LR134201.1 | Cedecea lapagei |
| 58 | 2076946 | 2077230 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 59 | 1301688 | 1301972 | + | NZ_CP023525.1 | Cedecea neteri |
| 60 | 1382398 | 1382682 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 61 | 3017155 | 3017397 | - | NZ_CP061511.1 | Mixta calida |
| 62 | 3047339 | 3047623 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 63 | 1138080 | 1138364 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 64 | 4355881 | 4356123 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 65 | 2742145 | 2742387 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 66 | 3730778 | 3731074 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 67 | 2306537 | 2306779 | - | NZ_CP028271.1 | Mixta intestinalis |
| 68 | 3018773 | 3019057 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 69 | 5893450 | 5893746 | - | NZ_CP011254.1 | Serratia fonticola |
| 70 | 3363452 | 3363748 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 71 | 1525967 | 1526203 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 72 | 3210236 | 3210532 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 73 | 3809216 | 3809500 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 74 | 2551022 | 2551318 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 75 | 3344780 | 3345016 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 76 | 663488 | 663784 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 77 | 4381699 | 4381935 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 78 | 4977681 | 4977923 | - | NZ_CP065640.1 | Serratia rubidaea |
| 79 | 530775 | 531011 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 80 | 1265276 | 1265512 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 81 | 1460054 | 1460296 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 82 | 3358881 | 3359123 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 83 | 2731886 | 2732179 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 84 | 406879 | 407163 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 85 | 3152901 | 3153137 | - | NZ_CP025799.1 | Dickeya zeae |
| 86 | 2544319 | 2544615 | - | NZ_CP065534.1 | Lonsdalea populi |
| 87 | 1531383 | 1531619 | + | NZ_CP043727.1 | Yersinia canariae |
| 88 | 3198005 | 3198301 | - | NZ_CP046293.1 | Yersinia intermedia |
| 89 | 99265 | 99501 | + | NZ_CP067057.1 | Rahnella aceris |
| 90 | 1200775 | 1201011 | + | NZ_CP038853.1 | Pantoea vagans |
| 91 | 1480677 | 1480988 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 92 | 2813249 | 2813545 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 93 | 2643161 | 2643457 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 94 | 1125449 | 1125745 | + | NZ_CP016043.1 | Edwardsiella hoshinae |
| 95 | 1335058 | 1335369 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 96 | 1419628 | 1419870 | + | NZ_CP071320.1 | Serratia ureilytica |
| 97 | 4212781 | 4213017 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 98 | 3679404 | 3679646 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 99 | 3519949 | 3520245 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 100 | 1022011 | 1022322 | + | NZ_CP032487.1 | Yersinia hibernica |
| 101 | 1460333 | 1460575 | - | NZ_CP049115.1 | Pantoea stewartii |
| 102 | 3710757 | 3710999 | - | NZ_LT906479.1 | Serratia ficaria |
| 103 | 1252151 | 1252387 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 104 | 3687471 | 3687767 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 105 | 1091367 | 1091663 | - | NZ_CP011078.1 | Yersinia ruckeri |
| 106 | 1428592 | 1428888 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 107 | 2995056 | 2995298 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 108 | 1411775 | 1412071 | - | NZ_CP009787.1 | Yersinia rohdei |
| 109 | 2801452 | 2801748 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 110 | 1234705 | 1234986 | + | NZ_LR134531.1 | Pragia fontium |
| 111 | 3194167 | 3194463 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 112 | 2607577 | 2607870 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 113 | 1524773 | 1525069 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 114 | 3323796 | 3324092 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 115 | 2442956 | 2443249 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 116 | 1172566 | 1172859 | + | NZ_LS483470.1 | Leminorella richardii |
| 117 | 3095107 | 3095403 | - | NZ_CP050150.1 | Hafnia alvei |
| 118 | 1305936 | 1306172 | + | NZ_LT615367.1 | Dickeya aquatica |
| 119 | 1636544 | 1636840 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 120 | 459746 | 460042 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 121 | 2142844 | 2143080 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 122 | 2932422 | 2932658 | - | NZ_CP015581.1 | Tatumella citrea |
| 123 | 1707589 | 1707885 | + | NZ_LS483422.1 | Providencia heimbachae |
| 124 | 2475706 | 2476002 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 125 | 2141525 | 2141821 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 126 | 3315645 | 3315881 | - | NZ_CP029736.1 | Providencia rettgeri |
| 127 | 1543608 | 1543844 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 128 | 4727109 | 4727345 | - | NZ_CP007230.1 | Yersinia similis |
| 129 | 2656946 | 2657242 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 130 | 180275 | 180511 | - | NZ_CP026364.1 | Proteus hauseri |
| 131 | 2518315 | 2518551 | - | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 132 | 238243 | 238539 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 133 | 1464079 | 1464375 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 134 | 2957096 | 2957392 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 135 | 3757638 | 3757934 | - | NZ_LR134494.1 | Serratia quinivorans |
| 136 | 1940352 | 1940648 | - | NC_010554.1 | Proteus mirabilis HI4320 |
| 137 | 1764325 | 1764621 | + | NZ_CP048796.1 | Providencia vermicola |
| 138 | 215941 | 216177 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 139 | 2269685 | 2269981 | - | NZ_CP007445.1 | Gilliamella apicola |
| 140 | 901085 | 901321 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 141 | 2787445 | 2787681 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 142 | 1168391 | 1168675 | + | NZ_CP015029.1 | Frederiksenia canicola |
| 143 | 1274899 | 1275195 | + | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 144 | 1133444 | 1133740 | + | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 145 | 950496 | 950783 | + | NZ_CP040863.1 | Rodentibacter heylii |
| 146 | 914760 | 915014 | + | NZ_LS483443.1 | Aggregatibacter segnis ATCC 33393 |
| 147 | 361362 | 361598 | + | NZ_CP028926.1 | Pasteurella multocida |
| 148 | 1606753 | 1607034 | + | NC_012962.1 | Photorhabdus asymbiotica |
| 149 | 162993 | 163277 | + | NZ_LR134167.1 | Avibacterium volantium |
| 150 | 1786848 | 1787138 | + | NZ_CP015031.1 | Basfia succiniciproducens |
| 151 | 2194875 | 2195165 | + | NC_006300.1 | [Mannheimia] succiniciproducens MBEL55E |
| 152 | 1881991 | 1882254 | - | NZ_CP030753.1 | Actinobacillus pleuropneumoniae |
| 153 | 2004704 | 2004967 | - | NZ_CP007715.1 | Actinobacillus equuli subsp. equuli |
| 154 | 2912881 | 2913123 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR134340.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF13649.8 | 0.66 | 101 | 5119.0 | same-strand | Methyltransferase domain |
| 2 | PF01713.23 | 0.8 | 123 | 4429 | opposite-strand | Smr domain |
| 3 | PF02737.20 | 0.84 | 129 | 1505.0 | same-strand | 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain |
| 4 | PF00725.24 | 0.84 | 129 | 1505.0 | same-strand | 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain |
| 5 | PF00108.25 | 0.84 | 129 | 196.5 | same-strand | Thiolase, N-terminal domain |
| 6 | PF02803.20 | 0.84 | 129 | 196.5 | same-strand | Thiolase, C-terminal domain |
| 7 | PF03349.18 | 0.93 | 142 | 377 | opposite-strand | Outer membrane protein transport protein (OMPP1/FadL/TodX) |
| 8 | PF04333.15 | 0.9 | 138 | 1815 | same-strand | MlaA lipoprotein |
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