Result : P0AD08
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YecF |
| NCBI Accession ID | AE014075.1 |
| Organism | Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) |
| Left | 2144494 |
| Right | 2144718 |
| Strand | + |
| Nucleotide Sequence | ATGAGTACGCCTGATTTTTCTACTGCCGAGAATAATCAAGAACTGGCAAATGAAGTCTCCTGCCTGAAAGCGATGCTGACGCTGATGCTGCAGGCGATGGGACAAGCTGACGCGGGCCGCGTGATGTTAAAGATGGAAAAACAGCTTGCGCTGATCGAAGACGAAACCCAGGCTGCAGTATTTTCCAAAACGGTTAAGCAAATTAAACAAGCCTACCGTCAGTAA |
| Sequence | MSTPDFSTAENNQELANEVSCLKAMLTLMLQAMGQADAGRVMLKMEKQLALIEDETQAAVFSKTVKQIKQAYRQ |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl23926. Profile Description: Protein of unknown function (DUF2594). This family of proteins with unknown function appear to be restricted to Enterobacteriaceae. |
| Pubmed ID | 12471157 |
| Domain | CDD:390178 |
| Functional Category | Others |
| Uniprot ID | P0AD08 |
| ORF Length (Amino Acid) | 74 |
++ More..
| Conservation Analysis |
No. of Species: 137
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2572326 | 2572550 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 2 | 1992100 | 1992324 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 3 | 1995818 | 1996042 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 4 | 1926697 | 1926921 | + | NZ_AP014857.1 | Escherichia albertii |
| 5 | 2618226 | 2618450 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 6 | 2560038 | 2560262 | + | NZ_LR134340.1 | Escherichia marmotae |
| 7 | 4386919 | 4387143 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 8 | 711120 | 711344 | + | NZ_CP033744.1 | Citrobacter freundii |
| 9 | 2088684 | 2088908 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 10 | 1019253 | 1019477 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 11 | 1500051 | 1500275 | + | NZ_CP038469.1 | Citrobacter tructae |
| 12 | 4255812 | 4256036 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 13 | 2678115 | 2678339 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 14 | 164985 | 165209 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 15 | 2263020 | 2263244 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 16 | 1869415 | 1869639 | - | NZ_CP054254.1 | Klebsiella variicola |
| 17 | 2167797 | 2168021 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 18 | 1801370 | 1801594 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 19 | 2039364 | 2039588 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 20 | 1935104 | 1935328 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 21 | 1202446 | 1202670 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 22 | 3409274 | 3409498 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 23 | 50481 | 50705 | + | NZ_CP053416.1 | Salmonella bongori |
| 24 | 2481436 | 2481660 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 25 | 1779433 | 1779657 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 26 | 1912497 | 1912721 | - | NZ_CP041247.1 | Raoultella electrica |
| 27 | 5291854 | 5292078 | + | NZ_CP026047.1 | Raoultella planticola |
| 28 | 1974866 | 1975090 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 29 | 2766094 | 2766318 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 30 | 2025741 | 2025965 | - | NZ_CP050508.1 | Raoultella terrigena |
| 31 | 1769635 | 1769859 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 32 | 120922 | 121146 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 33 | 2658440 | 2658664 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 34 | 1795796 | 1796020 | - | NZ_CP023525.1 | Cedecea neteri |
| 35 | 2833075 | 2833299 | + | NC_015968.1 | Enterobacter soli |
| 36 | 705525 | 705749 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 37 | 1658198 | 1658422 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 38 | 791269 | 791493 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 39 | 2876175 | 2876399 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 40 | 2894469 | 2894693 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 41 | 2896791 | 2897015 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 42 | 4373689 | 4373913 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 43 | 3184694 | 3184918 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 44 | 1657129 | 1657353 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 45 | 2133085 | 2133309 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 46 | 2623329 | 2623553 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 47 | 2947979 | 2948203 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 48 | 4156676 | 4156900 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 49 | 1525795 | 1526019 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 50 | 584801 | 585025 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 51 | 23682 | 23906 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 52 | 2758465 | 2758689 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 53 | 2123451 | 2123675 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 54 | 3081142 | 3081366 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 55 | 2987530 | 2987754 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 56 | 1715693 | 1715917 | - | NZ_LR134201.1 | Cedecea lapagei |
| 57 | 1301787 | 1302011 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 58 | 1875434 | 1875658 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 59 | 1763959 | 1764183 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 60 | 106711 | 106935 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 61 | 4475862 | 4476086 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 62 | 1490874 | 1491098 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 63 | 1615825 | 1616049 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 64 | 1532402 | 1532626 | - | NZ_CP023567.1 | Erwinia pyrifoliae |
| 65 | 1914955 | 1915179 | - | NZ_CP046293.1 | Yersinia intermedia |
| 66 | 1478183 | 1478407 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 67 | 4636774 | 4636998 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 68 | 1710103 | 1710327 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 69 | 1870285 | 1870509 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 70 | 1934499 | 1934723 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 71 | 2757424 | 2757648 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 72 | 2212490 | 2212714 | + | NZ_CP032487.1 | Yersinia hibernica |
| 73 | 3212359 | 3212583 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 74 | 152274 | 152498 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 75 | 2341609 | 2341833 | + | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 76 | 2735182 | 2735406 | + | NZ_CP043727.1 | Yersinia canariae |
| 77 | 2951491 | 2951715 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 78 | 1856139 | 1856363 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 79 | 3007829 | 3008053 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 80 | 309315 | 309539 | - | NZ_CP009787.1 | Yersinia rohdei |
| 81 | 2317783 | 2318007 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 82 | 54854 | 55078 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 83 | 1904604 | 1904828 | - | NZ_LT615367.1 | Dickeya aquatica |
| 84 | 1912801 | 1913025 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 85 | 1947344 | 1947568 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 86 | 1230202 | 1230426 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 87 | 1779071 | 1779295 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 88 | 1926643 | 1926867 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 89 | 3132986 | 3133210 | + | NZ_CP071320.1 | Serratia ureilytica |
| 90 | 1935182 | 1935406 | - | NZ_LR134494.1 | Serratia quinivorans |
| 91 | 2026785 | 2027009 | + | NZ_CP067057.1 | Rahnella aceris |
| 92 | 1735871 | 1736095 | - | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 93 | 3393785 | 3394009 | - | NZ_CP065640.1 | Serratia rubidaea |
| 94 | 1996699 | 1996923 | - | NZ_LT906479.1 | Serratia ficaria |
| 95 | 1729873 | 1730097 | - | NZ_CP026377.1 | Mixta gaviniae |
| 96 | 1718559 | 1718783 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 97 | 395605 | 395829 | + | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 98 | 2947491 | 2947715 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 99 | 2267951 | 2268175 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 100 | 1366934 | 1367158 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 101 | 4563467 | 4563691 | - | NZ_CP009460.1 | Dickeya fangzhongdai |
| 102 | 3122303 | 3122527 | + | NZ_CP031560.1 | Dickeya dianthicola |
| 103 | 1652051 | 1652275 | - | NZ_CP061511.1 | Mixta calida |
| 104 | 4369242 | 4369466 | - | NZ_CP049115.1 | Pantoea stewartii |
| 105 | 3123345 | 3123569 | + | NC_014500.1 | Dickeya dadantii 3937 |
| 106 | 3012985 | 3013209 | + | NZ_CP025799.1 | Dickeya zeae |
| 107 | 4283384 | 4283608 | - | NZ_CP011254.1 | Serratia fonticola |
| 108 | 891142 | 891366 | - | NZ_CP028271.1 | Mixta intestinalis |
| 109 | 1819013 | 1819237 | - | NZ_CP050150.1 | Hafnia alvei |
| 110 | 3561039 | 3561263 | + | NZ_CP023009.1 | Lonsdalea britannica |
| 111 | 4200044 | 4200268 | + | NZ_CP019706.1 | Pantoea alhagi |
| 112 | 25727 | 25951 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 113 | 2187963 | 2188187 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 114 | 2672963 | 2673187 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 115 | 1451264 | 1451488 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 116 | 2620264 | 2620488 | + | NZ_CP038853.1 | Pantoea vagans |
| 117 | 2374326 | 2374550 | + | NZ_CP065534.1 | Lonsdalea populi |
| 118 | 752635 | 752859 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 119 | 3186113 | 3186337 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 120 | 1511577 | 1511801 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 121 | 4607185 | 4607409 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 122 | 1519912 | 1520136 | - | NZ_CP042220.2 | Dickeya poaceiphila |
| 123 | 2957988 | 2958212 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 124 | 676345 | 676575 | - | NZ_LS483470.1 | Leminorella richardii |
| 125 | 2093788 | 2094009 | - | NZ_LS483422.1 | Providencia heimbachae |
| 126 | 3155555 | 3155779 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 127 | 3162988 | 3163221 | + | NZ_LR134531.1 | Pragia fontium |
| 128 | 1699890 | 1700111 | + | NZ_CP031123.2 | Providencia huaxiensis |
| 129 | 2484840 | 2485064 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 130 | 2960536 | 2960757 | + | NZ_CP029736.1 | Providencia rettgeri |
| 131 | 2166172 | 2166393 | - | NZ_CP048796.1 | Providencia vermicola |
| 132 | 2061054 | 2061245 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 133 | 3757210 | 3757434 | - | NZ_CP007230.1 | Yersinia similis |
| 134 | 818056 | 818289 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 135 | 914434 | 914667 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 136 | 1534011 | 1534232 | + | NC_010554.1 | Proteus mirabilis HI4320 |
| 137 | 3616819 | 3617040 | + | NZ_CP026364.1 | Proteus hauseri |
| 138 | 3237342 | 3237566 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP061527.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01066.23 | 0.91 | 125 | 3022.0 | opposite-strand | CDP-alcohol phosphatidyltransferase |
| 2 | PF08459.13 | 0.92 | 126 | 1136 | opposite-strand | UvrC RIbonuclease H-like domain |
| 3 | PF01541.26 | 0.92 | 126 | 1136 | opposite-strand | GIY-YIG catalytic domain |
| 4 | PF02151.21 | 0.92 | 126 | 1136 | opposite-strand | UvrB/uvrC motif |
| 5 | PF14520.8 | 0.92 | 126 | 1136 | opposite-strand | Helix-hairpin-helix domain |
| 6 | PF00072.26 | 0.91 | 124 | 478 | opposite-strand | Response regulator receiver domain |
| 7 | PF00196.21 | 0.92 | 126 | 465.0 | opposite-strand | Bacterial regulatory proteins, luxR family |
++ More..