Result : P0ACW2
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YdbJ |
| NCBI Accession ID | U00096.3 |
| Organism | Escherichia coli (strain K12) |
| Left | 1441058 |
| Right | 1441324 |
| Strand | + |
| Nucleotide Sequence | ATGCGAGCAGCGTTTTGGGTAGGGTGTGCCGCTTTATTGTTGTCGGCGTGTAGTAGTGAACCTGTTCAGCAGGCGACTGCCGCGCACGTAGCGCCAGGTTTAAAAGCGTCGATGTCCAGTAGTGGAGAAGCAAATTGTGCAATGATCGGCGGTTCGCTTTCTGTTGCCCGTCAACTGGATGGTACGGCGATTGGGATGTGTGCATTACCCAACGGCAAACGCTGTAGCGAACAGTCACTTGCCGCCGGGAGCTGTGGCAGCTATTAA |
| Sequence | MRAAFWVGCAALLLSACSSEPVQQATAAHVAPGLKASMSSSGEANCAMIGGSLSVARQLDGTAIGMCALPNGKRCSEQSLAAGSCGSY |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl19829. Profile Description: Domain of unknown function (DUF333). This small domain of about 70 residues is found in a number of bacterial proteins. It is found at the N-terminus the of AF_1947 protein. The proteins containing this domain are uncharacterized. |
| Pubmed ID | 9025293 9097039 9278503 16738553 |
| Domain | CDD:418660 |
| Functional Category | Others |
| Uniprot ID | P0ACW2 |
| ORF Length (Amino Acid) | 88 |
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| Conservation Analysis |
No. of Species: 71
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2259925 | 2260191 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 2 | 1441058 | 1441324 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 3 | 1978697 | 1978963 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 4 | 656026 | 656292 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 5 | 2288592 | 2288858 | - | NZ_LR134340.1 | Escherichia marmotae |
| 6 | 1461901 | 1462167 | + | NZ_AP014857.1 | Escherichia albertii |
| 7 | 252849 | 253115 | - | NZ_CP033744.1 | Citrobacter freundii |
| 8 | 4756408 | 4756674 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 9 | 1066421 | 1066687 | - | NZ_CP038469.1 | Citrobacter tructae |
| 10 | 1982771 | 1983037 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 11 | 2474962 | 2475228 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 12 | 3032010 | 3032276 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 13 | 1378874 | 1379140 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 14 | 3910893 | 3911165 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 15 | 38958 | 39224 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 16 | 2728561 | 2728827 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 17 | 3033053 | 3033325 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 18 | 2144298 | 2144564 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 19 | 4151178 | 4151444 | - | NZ_CP053416.1 | Salmonella bongori |
| 20 | 1741577 | 1741843 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 21 | 371893 | 372159 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 22 | 2498322 | 2498588 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 23 | 2186008 | 2186274 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 24 | 1755006 | 1755278 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 25 | 965529 | 965795 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 26 | 2623139 | 2623405 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 27 | 1705806 | 1706072 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 28 | 2475770 | 2476036 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 29 | 1304497 | 1304763 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 30 | 2564102 | 2564368 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 31 | 574641 | 574907 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 32 | 2468353 | 2468619 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 33 | 4179396 | 4179662 | + | NZ_CP026047.1 | Raoultella planticola |
| 34 | 3091294 | 3091560 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 35 | 2499476 | 2499742 | - | NC_015968.1 | Enterobacter soli |
| 36 | 2501529 | 2501795 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 37 | 3229328 | 3229594 | - | NZ_CP050508.1 | Raoultella terrigena |
| 38 | 2823701 | 2823967 | - | NZ_CP041247.1 | Raoultella electrica |
| 39 | 2301005 | 2301271 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 40 | 2275656 | 2275922 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 41 | 2544495 | 2544761 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 42 | 2420234 | 2420500 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 43 | 3326376 | 3326642 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 44 | 3276276 | 3276548 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 45 | 3336348 | 3336620 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 46 | 1856872 | 1857099 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 47 | 2160790 | 2161056 | + | NZ_LR134201.1 | Cedecea lapagei |
| 48 | 2825227 | 2825490 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 49 | 3036804 | 3037067 | - | NZ_CP054254.1 | Klebsiella variicola |
| 50 | 2527204 | 2527470 | - | NZ_CP023525.1 | Cedecea neteri |
| 51 | 2386187 | 2386450 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 52 | 519217 | 519483 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 53 | 2332434 | 2332700 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 54 | 1906920 | 1907186 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 55 | 2315397 | 2315663 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 56 | 2303591 | 2303857 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 57 | 1137426 | 1137692 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 58 | 4088853 | 4089134 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 59 | 1753730 | 1753996 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 60 | 2241670 | 2241936 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 61 | 4028446 | 4028712 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 62 | 2045157 | 2045423 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 63 | 2267337 | 2267612 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 64 | 2338726 | 2338998 | - | NZ_CP026377.1 | Mixta gaviniae |
| 65 | 2247515 | 2247787 | - | NZ_CP061511.1 | Mixta calida |
| 66 | 2592543 | 2592818 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 67 | 3608723 | 3608956 | + | NZ_CP019706.1 | Pantoea alhagi |
| 68 | 1877363 | 1877638 | + | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 69 | 2024686 | 2024964 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 70 | 2243942 | 2244166 | + | NZ_CP050150.1 | Hafnia alvei |
| 71 | 1920373 | 1920609 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 72 | 2025929 | 2026165 | - | NZ_CP023567.1 | Erwinia pyrifoliae |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP061527.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF13617.8 | 0.75 | 53 | 4398.5 | same-strand | YnbE-like lipoprotein |
| 2 | PF11739.10 | 0.8 | 57 | 1796.0 | same-strand | Dicarboxylate transport |
| 3 | PF02826.21 | 0.83 | 59 | 536.0 | opposite-strand | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain |
| 4 | PF00389.32 | 0.83 | 59 | 536.0 | opposite-strand | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain |
| 5 | PF03724.18 | 0.86 | 61 | 1.0 | opposite-strand | META domain |
| 6 | PF01855.21 | 0.83 | 59 | 283.0 | opposite-strand | Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg |
| 7 | PF01558.20 | 0.83 | 59 | 283.0 | opposite-strand | Pyruvate ferredoxin/flavodoxin oxidoreductase |
| 8 | PF10371.11 | 0.83 | 59 | 283.0 | opposite-strand | Domain of unknown function |
| 9 | PF13484.8 | 0.83 | 59 | 283.0 | opposite-strand | 4Fe-4S double cluster binding domain |
| 10 | PF12838.9 | 0.83 | 59 | 285 | opposite-strand | 4Fe-4S dicluster domain |
| 11 | PF00037.29 | 0.83 | 59 | 283.0 | opposite-strand | 4Fe-4S binding domain |
| 12 | PF13187.8 | 0.83 | 59 | 285 | opposite-strand | 4Fe-4S dicluster domain |
| 13 | PF14697.8 | 0.83 | 59 | 283.0 | opposite-strand | 4Fe-4S dicluster domain |
| 14 | PF12837.9 | 0.83 | 59 | 285 | opposite-strand | 4Fe-4S binding domain |
| 15 | PF13237.8 | 0.83 | 59 | 285 | opposite-strand | 4Fe-4S dicluster domain |
| 16 | PF13534.8 | 0.8 | 57 | 280.5 | opposite-strand | 4Fe-4S dicluster domain |
| 17 | PF13183.8 | 0.76 | 54 | 323.0 | opposite-strand | 4Fe-4S dicluster domain |
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