Result : P0AC66
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Glutaredoxin-like protein NrdH |
| NCBI Accession ID | AE014075.1 |
| Organism | Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) |
| Left | 3081260 |
| Right | 3081505 |
| Strand | + |
| Nucleotide Sequence | ATGCGCATTACTATTTACACTCGTAACGATTGCGTTCAGTGCCACGCCACTAAACGGGCGATGGAAAACCGGGGCTTTGATTTTGAAATGATTAATGTCGATCGCGTTCCTGAAGCGGCAGAAGCGCTGCGTGCTCAGGGCTTTCGTCAGTTGCCGGTTGTGATTGCAGGCGATCTTAGCTGGTCTGGTTTCCGCCCGGACATGATCAATCGTCTGCATCCAGCGCCACACGCGGCCAGTGCATGA |
| Sequence | MRITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRAQGFRQLPVVIAGDLSWSGFRPDMINRLHPAPHAASA |
| Source of smORF | Swiss-Prot |
| Function | Electron transport system for the ribonucleotide reductase system NrdEF. {ECO:0000250}. |
| Pubmed ID | 12471157 |
| Domain | CDD:412351 |
| Functional Category | Others |
| Uniprot ID | P0AC66 |
| ORF Length (Amino Acid) | 81 |
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| Conservation Analysis |
No. of Species: 92
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3943471 | 3943716 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 2 | 2774616 | 2774861 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 3 | 2800723 | 2800968 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 4 | 3525000 | 3525245 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 5 | 3290501 | 3290746 | + | NZ_LR134340.1 | Escherichia marmotae |
| 6 | 955506 | 955751 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 7 | 2742678 | 2742923 | + | NZ_AP014857.1 | Escherichia albertii |
| 8 | 775339 | 775584 | + | NZ_CP053416.1 | Salmonella bongori |
| 9 | 2951861 | 2952106 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 10 | 43459 | 43704 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 11 | 3743109 | 3743354 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 12 | 1690126 | 1690371 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 13 | 4002017 | 4002262 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 14 | 4480582 | 4480827 | - | NZ_CP038469.1 | Citrobacter tructae |
| 15 | 1180261 | 1180506 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 16 | 1675859 | 1676104 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 17 | 346881 | 347126 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 18 | 2356451 | 2356690 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 19 | 950118 | 950363 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 20 | 3735082 | 3735321 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 21 | 4212762 | 4213007 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 22 | 4243279 | 4243524 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 23 | 1387963 | 1388202 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 24 | 3777479 | 3777724 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 25 | 3545886 | 3546131 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 26 | 1034526 | 1034756 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 27 | 539803 | 540045 | + | NZ_CP026047.1 | Raoultella planticola |
| 28 | 1152982 | 1153224 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 29 | 5090064 | 5090306 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 30 | 1199407 | 1199649 | - | NZ_CP050508.1 | Raoultella terrigena |
| 31 | 3643434 | 3643673 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 32 | 1069540 | 1069782 | - | NZ_CP041247.1 | Raoultella electrica |
| 33 | 3376448 | 3376693 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 34 | 1269962 | 1270207 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 35 | 722304 | 722549 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 36 | 4744964 | 4745203 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 37 | 1375551 | 1375796 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 38 | 3639232 | 3639471 | + | NC_015968.1 | Enterobacter soli |
| 39 | 3626544 | 3626783 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 40 | 3651435 | 3651674 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 41 | 4736736 | 4736975 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 42 | 3304236 | 3304481 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 43 | 3599313 | 3599552 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 44 | 3940518 | 3940757 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 45 | 794835 | 795080 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 46 | 4110193 | 4110438 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 47 | 634113 | 634358 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 48 | 3500712 | 3500957 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 49 | 1594798 | 1595043 | + | NZ_CP033744.1 | Citrobacter freundii |
| 50 | 3549686 | 3549925 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 51 | 5143638 | 5143886 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 52 | 3292091 | 3292336 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 53 | 818803 | 819039 | - | NZ_CP023525.1 | Cedecea neteri |
| 54 | 817534 | 817770 | - | NZ_LR134201.1 | Cedecea lapagei |
| 55 | 73945 | 74190 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 56 | 1042837 | 1043073 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 57 | 1137651 | 1137863 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 58 | 1140556 | 1140768 | - | NZ_CP054254.1 | Klebsiella variicola |
| 59 | 1073003 | 1073215 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 60 | 1114846 | 1115058 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 61 | 927808 | 928056 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 62 | 2786709 | 2786951 | + | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 63 | 3820458 | 3820700 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 64 | 2560830 | 2561072 | - | NZ_CP019706.1 | Pantoea alhagi |
| 65 | 219582 | 219803 | - | NZ_CP048812.1 | Halomonas socia |
| 66 | 4017530 | 4017754 | + | NC_014532.2 | Halomonas elongata DSM 2581 |
| 67 | 1181998 | 1182243 | + | NC_013521.1 | Sanguibacter keddieii DSM 10542 |
| 68 | 2927227 | 2927469 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 69 | 2931581 | 2931823 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 70 | 1842963 | 1843205 | + | NZ_CP049115.1 | Pantoea stewartii |
| 71 | 1197085 | 1197306 | - | NC_014932.1 | Bartonella clarridgeiae 73 |
| 72 | 720503 | 720724 | - | NZ_CP020330.1 | Martelella mediterranea DSM 17316 |
| 73 | 1281317 | 1281538 | - | NZ_CP010803.1 | Martelella endophytica |
| 74 | 701067 | 701312 | + | NC_014246.1 | Mobiluncus curtisii ATCC 43063 |
| 75 | 3297102 | 3297344 | + | NZ_CP061511.1 | Mixta calida |
| 76 | 1209235 | 1209456 | + | NZ_CP045072.1 | Paracoccus kondratievae |
| 77 | 1760487 | 1760738 | - | NZ_CP034438.1 | Flaviflexus salsibiostraticola |
| 78 | 1118139 | 1118381 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 79 | 1055260 | 1055502 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 80 | 5055880 | 5056113 | - | NZ_CP015235.1 | Rhodococcus fascians D188 |
| 81 | 2076853 | 2077086 | + | NZ_AP023396.1 | Nocardia wallacei |
| 82 | 1810309 | 1810530 | - | NZ_CP053562.1 | Thioclava electrotropha |
| 83 | 3108962 | 3109204 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 84 | 6107619 | 6107858 | - | NZ_AP017900.1 | Nocardia seriolae |
| 85 | 981669 | 981911 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 86 | 956166 | 956408 | - | NZ_CP038853.1 | Pantoea vagans |
| 87 | 1063932 | 1064171 | - | NZ_CP018044.1 | Bifidobacterium choerinum |
| 88 | 1538365 | 1538586 | + | NZ_CP012908.1 | Ketogulonicigenium vulgare |
| 89 | 1297847 | 1298068 | + | NZ_CP019937.1 | Ketogulonicigenium robustum |
| 90 | 1129140 | 1129385 | + | NC_012803.1 | Micrococcus luteus NCTC 2665 |
| 91 | 756482 | 756679 | + | NZ_CP029684.2 | Oenococcus sicerae |
| 92 | 1362267 | 1362497 | - | NZ_CP042429.1 | Corynebacterium nuruki S6-4 |
| 93 | 119629 | 119826 | + | NZ_CP014324.1 | Oenococcus oeni |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP057657.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00528.24 | 0.72 | 66 | 5047 | same-strand | Binding-protein-dependent transport system inner membrane component |
| 2 | PF00005.29 | 0.79 | 73 | 3853.5 | same-strand | ABC transporter |
| 3 | PF00268.23 | 0.97 | 89 | 2535.0 | same-strand | Ribonucleotide reductase, small chain |
| 4 | PF02867.17 | 1.0 | 92 | 380 | same-strand | Ribonucleotide reductase, barrel domain |
| 5 | PF08343.12 | 1.0 | 92 | 380 | same-strand | Ribonucleotide reductase N-terminal |
| 6 | PF00317.23 | 1.0 | 92 | 380 | same-strand | Ribonucleotide reductase, all-alpha domain |
| 7 | PF07972.13 | 0.99 | 91 | -3.0 | same-strand | NrdI Flavodoxin like |
| 8 | PF05957.15 | 0.67 | 62 | 293 | same-strand | DUF883 N-terminal domain |
| 9 | PF19029.2 | 0.67 | 62 | 293 | same-strand | DUF883 C-terminal glycine zipper region |
| 10 | PF09400.12 | 0.78 | 72 | 775 | opposite-strand | Protein of unknown function (DUF2002) |
| 11 | PF06610.15 | 0.63 | 58 | 1161 | same-strand | L-alanine exporter |
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