Result : P0ABW4
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized ferredoxin-like protein YfaE |
| NCBI Accession ID | AE014075.1 |
| Organism | Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) |
| Left | 2635327 |
| Right | 2635581 |
| Strand | + |
| Nucleotide Sequence | ATGGCCCGCGTTACCCTGCGCATTACTGGCACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGCCGCGAAGGTTACTGCGGCTCCTGTCGCACCCGACTGGTCGCAGGCCAGGTGGACTGGATTGCCGAACCGTTAGCTTTTATTCAGCCGGGGGAAATTTTGCCCTGTTGTTGCCGGGCAAAAGGCGATATTGAAATCGAGATGTGA |
| Sequence | MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00159. Profile Description: N/A. The 2Fe-2S ferredoxin family have a general core structure consisting of beta(2)-alpha-beta(2) which a beta-grasp type fold. The domain is around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This cluster appears within sarcosine oxidase proteins. |
| Pubmed ID | 12471157 |
| Domain | CDD:412190 |
| Functional Category | Metal-binding |
| Uniprot ID | P0ABW4 |
| ORF Length (Amino Acid) | 84 |
++ More..
| Conservation Analysis |
No. of Species: 147
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 4447144 | 4447398 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 2 | 2348514 | 2348768 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 3 | 2350136 | 2350390 | + | NZ_AP014857.1 | Escherichia albertii |
| 4 | 2890811 | 2891065 | + | NZ_LR134340.1 | Escherichia marmotae |
| 5 | 2365267 | 2365521 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 6 | 3074425 | 3074679 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 7 | 1372486 | 1372740 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 8 | 2265748 | 2266002 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 9 | 195015 | 195269 | - | NZ_CP038469.1 | Citrobacter tructae |
| 10 | 363229 | 363483 | + | NZ_CP053416.1 | Salmonella bongori |
| 11 | 2384927 | 2385181 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 12 | 4579709 | 4579963 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 13 | 4020597 | 4020851 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 14 | 1048435 | 1048689 | + | NZ_CP033744.1 | Citrobacter freundii |
| 15 | 2480973 | 2481227 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 16 | 1348593 | 1348847 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 17 | 1468321 | 1468575 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 18 | 1799305 | 1799559 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 19 | 3743467 | 3743721 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 20 | 1552297 | 1552551 | - | NZ_CP054254.1 | Klebsiella variicola |
| 21 | 1467966 | 1468220 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 22 | 3101097 | 3101351 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 23 | 1537072 | 1537326 | - | NZ_CP041247.1 | Raoultella electrica |
| 24 | 1532422 | 1532676 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 25 | 140903 | 141157 | + | NZ_CP026047.1 | Raoultella planticola |
| 26 | 1507695 | 1507949 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 27 | 2143600 | 2143854 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 28 | 1750229 | 1750483 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 29 | 3140863 | 3141117 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 30 | 786652 | 786906 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 31 | 1495171 | 1495425 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 32 | 4684481 | 4684735 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 33 | 3133462 | 3133716 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 34 | 281580 | 281834 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 35 | 1515888 | 1516142 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 36 | 4749154 | 4749408 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 37 | 3290239 | 3290493 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 38 | 4679346 | 4679600 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 39 | 1722886 | 1723140 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 40 | 3455006 | 3455260 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 41 | 1394983 | 1395237 | - | NZ_CP023525.1 | Cedecea neteri |
| 42 | 979382 | 979636 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 43 | 4737518 | 4737775 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 44 | 3237488 | 3237742 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 45 | 4050695 | 4050949 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 46 | 3204224 | 3204478 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 47 | 3195429 | 3195683 | + | NC_015968.1 | Enterobacter soli |
| 48 | 1357135 | 1357389 | - | NZ_LR134201.1 | Cedecea lapagei |
| 49 | 3342741 | 3342995 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 50 | 1604751 | 1605005 | - | NZ_CP050508.1 | Raoultella terrigena |
| 51 | 520686 | 520940 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 52 | 1993466 | 1993720 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 53 | 1015704 | 1015958 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 54 | 3064008 | 3064262 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 55 | 2490201 | 2490455 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 56 | 1223019 | 1223273 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 57 | 3517220 | 3517474 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 58 | 2917523 | 2917777 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 59 | 3232796 | 3233050 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 60 | 492419 | 492673 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 61 | 2932254 | 2932508 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 62 | 2416041 | 2416301 | + | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 63 | 1363953 | 1364213 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 64 | 2658845 | 2659090 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 65 | 1345316 | 1345576 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 66 | 2506901 | 2507161 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 67 | 2932762 | 2933022 | - | NZ_CP019706.1 | Pantoea alhagi |
| 68 | 2190253 | 2190513 | + | NZ_CP028271.1 | Mixta intestinalis |
| 69 | 2928528 | 2928779 | + | NZ_CP061511.1 | Mixta calida |
| 70 | 3422561 | 3422809 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 71 | 3092850 | 3093110 | + | NZ_CP026377.1 | Mixta gaviniae |
| 72 | 1374892 | 1375152 | + | NZ_CP049115.1 | Pantoea stewartii |
| 73 | 1515097 | 1515357 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 74 | 1264516 | 1264776 | - | NZ_CP038853.1 | Pantoea vagans |
| 75 | 2743552 | 2743812 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 76 | 1320619 | 1320879 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 77 | 4449932 | 4450150 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 78 | 996306 | 996569 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 79 | 1294021 | 1294239 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 80 | 1184812 | 1185027 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 81 | 1487437 | 1487655 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 82 | 1254509 | 1254727 | - | NZ_CP025799.1 | Dickeya zeae |
| 83 | 187462 | 187722 | - | NZ_CP067057.1 | Rahnella aceris |
| 84 | 3470290 | 3470550 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 85 | 4868401 | 4868661 | + | NZ_CP065640.1 | Serratia rubidaea |
| 86 | 181229 | 181489 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 87 | 1314659 | 1314877 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 88 | 1370367 | 1370627 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 89 | 606759 | 607019 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 90 | 3243204 | 3243464 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 91 | 3445214 | 3445432 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 92 | 3057324 | 3057581 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 93 | 303087 | 303347 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 94 | 3505050 | 3505310 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 95 | 3677365 | 3677625 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 96 | 1060009 | 1060269 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 97 | 2852597 | 2852857 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 98 | 3419169 | 3419387 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 99 | 1301290 | 1301535 | + | NZ_CP009787.1 | Yersinia rohdei |
| 100 | 2867788 | 2868054 | + | NZ_CP015581.1 | Tatumella citrea |
| 101 | 2972768 | 2973028 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 102 | 1644608 | 1644853 | - | NZ_CP043727.1 | Yersinia canariae |
| 103 | 3195793 | 3196032 | - | NZ_CP007230.1 | Yersinia similis |
| 104 | 3566827 | 3567072 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 105 | 1527492 | 1527752 | - | NZ_CP071320.1 | Serratia ureilytica |
| 106 | 1339723 | 1339983 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 107 | 3035427 | 3035666 | + | NZ_CP046293.1 | Yersinia intermedia |
| 108 | 1426069 | 1426329 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 109 | 1600931 | 1601176 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 110 | 1222298 | 1222543 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 111 | 1133351 | 1133596 | - | NZ_CP032487.1 | Yersinia hibernica |
| 112 | 2885178 | 2885438 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 113 | 3569592 | 3569837 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 114 | 2865389 | 2865658 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 115 | 3693809 | 3694069 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 116 | 5726896 | 5727156 | + | NZ_CP011254.1 | Serratia fonticola |
| 117 | 2187172 | 2187435 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 118 | 2724064 | 2724309 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 119 | 2440710 | 2440973 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 120 | 1539474 | 1539734 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 121 | 3594410 | 3594670 | + | NZ_LT906479.1 | Serratia ficaria |
| 122 | 3637914 | 3638174 | + | NZ_LR134494.1 | Serratia quinivorans |
| 123 | 85323 | 85586 | + | NZ_CP026364.1 | Proteus hauseri |
| 124 | 2566292 | 2566516 | - | NZ_CP023536.1 | Providencia alcalifaciens |
| 125 | 3120365 | 3120625 | + | NZ_LT615367.1 | Dickeya aquatica |
| 126 | 2529104 | 2529361 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 127 | 1863383 | 1863646 | - | NZ_CP048796.1 | Providencia vermicola |
| 128 | 2436375 | 2436626 | - | NZ_CP018787.1 | Oxalobacter formigenes |
| 129 | 1859038 | 1859301 | + | NC_010554.1 | Proteus mirabilis HI4320 |
| 130 | 1803261 | 1803524 | - | NZ_LS483422.1 | Providencia heimbachae |
| 131 | 1121665 | 1121928 | - | NZ_CP065534.1 | Lonsdalea populi |
| 132 | 2042404 | 2042667 | + | NZ_CP031123.2 | Providencia huaxiensis |
| 133 | 3222531 | 3222794 | + | NZ_CP029736.1 | Providencia rettgeri |
| 134 | 2897115 | 2897372 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 135 | 3560037 | 3560273 | + | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 136 | 1956914 | 1957168 | - | NC_016041.1 | Glaciecola nitratireducens FR1064 |
| 137 | 1622894 | 1623142 | - | NZ_LT906463.1 | Haemophilus pittmaniae |
| 138 | 2183286 | 2183528 | + | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 139 | 1973402 | 1973677 | + | NZ_CP044399.1 | Moritella marina ATCC 15381 |
| 140 | 1702583 | 1702855 | - | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 141 | 2605450 | 2605713 | + | NC_020888.1 | Thalassolituus oleivorans MIL-1 |
| 142 | 1969652 | 1969873 | - | NZ_CP028926.1 | Pasteurella multocida |
| 143 | 715313 | 715597 | - | NZ_CP059569.1 | Kingella oralis |
| 144 | 1454132 | 1454389 | + | NZ_CP016605.1 | Bisgaardia hudsonensis |
| 145 | 1482614 | 1482898 | + | NZ_CP059563.1 | Conchiformibius steedae |
| 146 | 3480116 | 3480388 | + | NZ_CP072425.1 | Pseudoalteromonas viridis |
| 147 | 1462770 | 1462988 | - | NZ_CP061941.1 | Marinomonas algicola |
| 148 | 1522462 | 1522698 | - | NZ_CP061081.1 | Marinomonas arctica |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP053416.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00268.23 | 0.99 | 145 | 3.0 | same-strand | Ribonucleotide reductase, small chain |
| 2 | PF02867.17 | 0.98 | 144 | 1234 | same-strand | Ribonucleotide reductase, barrel domain |
| 3 | PF03477.18 | 0.98 | 144 | 1234 | same-strand | ATP cone domain |
| 4 | PF00317.23 | 0.98 | 144 | 1234 | same-strand | Ribonucleotide reductase, all-alpha domain |
| 5 | PF08241.14 | 0.89 | 131 | 3926.5 | same-strand | Methyltransferase domain |
| 6 | PF13649.8 | 0.89 | 131 | 3926.5 | same-strand | Methyltransferase domain |
| 7 | PF08242.14 | 0.89 | 131 | 3926.5 | same-strand | Methyltransferase domain |
| 8 | PF00521.22 | 0.87 | 128 | 4859 | opposite-strand | DNA gyrase/topoisomerase IV, subunit A |
| 9 | PF03989.15 | 0.86 | 127 | 4859.0 | opposite-strand | DNA gyrase C-terminal domain, beta-propeller |
| 10 | PF09456.12 | 0.68 | 100 | 7653.5 | opposite-strand | RcsC Alpha-Beta-Loop (ABL) |
| 11 | PF00072.26 | 0.71 | 104 | 7645.5 | opposite-strand | Response regulator receiver domain |
| 12 | PF02518.28 | 0.71 | 104 | 7641.5 | opposite-strand | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
| 13 | PF00512.27 | 0.71 | 105 | 7635.5 | opposite-strand | His Kinase A (phospho-acceptor) domain |
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