Result : P0ABR1
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | DNA damage-inducible protein I |
| NCBI Accession ID | D31709.1 |
| Organism | Escherichia coli (strain K12) |
| Left | 867 |
| Right | 1112 |
| Strand | + |
| Nucleotide Sequence | ATGCGAATTGAAGTCACCATAGCGAAAACTTCTCCATTGCCAGCTGGGGCTATTGACGCCCTGGCTGGCGAACTTTCCCGCCGTATTCAGTATGCGTTTCCTGATAATGAAGGCCACGTATCGGTACGTTATGCCGCAGCGAATAATTTATCGGTTATTGGCGCGACAAAAGAAGATAAACAGCGCATTAGTGAAATTCTCCAGGAAACGTGGGAAAGCGCCGATGACTGGTTTGTCAGCGAATAA |
| Sequence | MRIEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRYAAANNLSVIGATKEDKQRISEILQETWESADDWFVSE |
| Source of smORF | Swiss-Prot |
| Function | Involved in SOS regulation. Inhibits RecA by preventing RecA to bind ssDNA. Can displace ssDNA from RecA. |
| Pubmed ID | 8682790 8905232 9278503 16738553 11230150 11152126 |
| Domain | CDD:416342 |
| Functional Category | Others |
| Uniprot ID | P0ABR1 |
| ORF Length (Amino Acid) | 81 |
++ More..
| Conservation Analysis |
No. of Species: 130
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1109003 | 1109248 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 2 | 1121242 | 1121487 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 3 | 1480527 | 1480772 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 4 | 1699246 | 1699491 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 5 | 1764864 | 1765109 | - | NZ_LR134340.1 | Escherichia marmotae |
| 6 | 1130041 | 1130286 | - | NZ_AP014857.1 | Escherichia albertii |
| 7 | 518251 | 518496 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 8 | 4599626 | 4599871 | - | NZ_CP033744.1 | Citrobacter freundii |
| 9 | 296411 | 296644 | - | NZ_CP033744.1 | Citrobacter freundii |
| 10 | 1865097 | 1865342 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 11 | 1778749 | 1778982 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 12 | 3412710 | 3412955 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 13 | 4997156 | 4997389 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 14 | 3657714 | 3657959 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 15 | 1838999 | 1839232 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 16 | 1576552 | 1576797 | + | NZ_CP038469.1 | Citrobacter tructae |
| 17 | 1218488 | 1218733 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 18 | 1248185 | 1248430 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 19 | 905055 | 905300 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 20 | 3637391 | 3637636 | - | NZ_CP053416.1 | Salmonella bongori |
| 21 | 1734984 | 1735229 | - | NC_015968.1 | Enterobacter soli |
| 22 | 1715568 | 1715813 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 23 | 791219 | 791464 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 24 | 1750003 | 1750248 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 25 | 1762364 | 1762609 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 26 | 1985389 | 1985634 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 27 | 1781576 | 1781821 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 28 | 4240734 | 4240979 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 29 | 1744613 | 1744858 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 30 | 930917 | 931162 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 31 | 1183654 | 1183899 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 32 | 1885005 | 1885250 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 33 | 629833 | 630078 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 34 | 1869112 | 1869357 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 35 | 3027716 | 3027961 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 36 | 2939924 | 2940157 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 37 | 1738891 | 1739136 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 38 | 2483854 | 2484099 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 39 | 1709043 | 1709288 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 40 | 1153228 | 1153473 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 41 | 3310729 | 3310974 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 42 | 1886970 | 1887215 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 43 | 2871362 | 2871607 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 44 | 2373192 | 2373437 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 45 | 1244370 | 1244615 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 46 | 2883694 | 2883939 | + | NZ_LR134201.1 | Cedecea lapagei |
| 47 | 3103317 | 3103562 | + | NZ_CP023525.1 | Cedecea neteri |
| 48 | 2511068 | 2511313 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 49 | 2795742 | 2795987 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 50 | 1659477 | 1659722 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 51 | 1672177 | 1672422 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 52 | 3098743 | 3098988 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 53 | 2951500 | 2951733 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 54 | 2787077 | 2787322 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 55 | 2803841 | 2804086 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 56 | 62803 | 63048 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 57 | 944304 | 944549 | - | NZ_CP028271.1 | Mixta intestinalis |
| 58 | 1762598 | 1762843 | - | NZ_CP026377.1 | Mixta gaviniae |
| 59 | 1705270 | 1705515 | - | NZ_CP061511.1 | Mixta calida |
| 60 | 3339284 | 3339529 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 61 | 3770910 | 3771155 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 62 | 2765278 | 2765511 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 63 | 4166954 | 4167199 | + | NZ_CP019706.1 | Pantoea alhagi |
| 64 | 2486911 | 2487156 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 65 | 2622837 | 2623082 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 66 | 2535751 | 2535996 | + | NZ_CP038853.1 | Pantoea vagans |
| 67 | 3209860 | 3210105 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 68 | 3604888 | 3605133 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 69 | 1533269 | 1533511 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 70 | 2913244 | 2913489 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 71 | 4712583 | 4712825 | - | NZ_CP009460.1 | Dickeya fangzhongdai |
| 72 | 3595380 | 3595631 | + | NZ_CP050508.1 | Raoultella terrigena |
| 73 | 2466184 | 2466417 | + | NZ_CP050508.1 | Raoultella terrigena |
| 74 | 1497023 | 1497268 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 75 | 1888883 | 1889122 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 76 | 2865816 | 2866058 | + | NZ_LT615367.1 | Dickeya aquatica |
| 77 | 1831756 | 1832001 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 78 | 3278989 | 3279240 | + | NZ_CP041247.1 | Raoultella electrica |
| 79 | 2999592 | 2999831 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 80 | 1207112 | 1207351 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 81 | 2010574 | 2010813 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 82 | 4493075 | 4493314 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 83 | 2312922 | 2313167 | + | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 84 | 1516740 | 1516985 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 85 | 1797881 | 1798123 | - | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 86 | 1988239 | 1988493 | + | NZ_CP067057.1 | Rahnella aceris |
| 87 | 3486286 | 3486537 | + | NZ_CP054254.1 | Klebsiella variicola |
| 88 | 3482165 | 3482416 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 89 | 3238017 | 3238268 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 90 | 2015808 | 2016059 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 91 | 3777158 | 3777409 | - | NZ_CP026047.1 | Raoultella planticola |
| 92 | 1837360 | 1837602 | - | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 93 | 1565134 | 1565379 | - | NZ_CP023567.1 | Erwinia pyrifoliae |
| 94 | 2942597 | 2942839 | + | NZ_CP031560.1 | Dickeya dianthicola |
| 95 | 1649374 | 1649616 | - | NZ_CP042220.2 | Dickeya poaceiphila |
| 96 | 3005149 | 3005391 | + | NC_014500.1 | Dickeya dadantii 3937 |
| 97 | 1819651 | 1819890 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 98 | 4400166 | 4400411 | - | NZ_CP049115.1 | Pantoea stewartii |
| 99 | 250698 | 250940 | + | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 100 | 2869104 | 2869343 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 101 | 1027207 | 1027446 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 102 | 3076226 | 3076465 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 103 | 1863711 | 1863953 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 104 | 4807198 | 4807437 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 105 | 1519141 | 1519392 | - | NZ_CP065534.1 | Lonsdalea populi |
| 106 | 2655947 | 2656192 | + | NZ_CP046293.1 | Yersinia intermedia |
| 107 | 258901 | 259131 | - | NZ_CP046293.1 | Yersinia intermedia |
| 108 | 1382958 | 1383203 | - | NZ_CP032487.1 | Yersinia hibernica |
| 109 | 2671075 | 2671326 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 110 | 2912022 | 2912264 | + | NZ_CP025799.1 | Dickeya zeae |
| 111 | 3974335 | 3974574 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 112 | 1519818 | 1520057 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 113 | 1962869 | 1963108 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 114 | 3438894 | 3439133 | - | NZ_CP065640.1 | Serratia rubidaea |
| 115 | 1894876 | 1895121 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 116 | 3893721 | 3893966 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 117 | 1734023 | 1734268 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 118 | 933361 | 933606 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 119 | 4325317 | 4325556 | - | NZ_CP011254.1 | Serratia fonticola |
| 120 | 1976653 | 1976892 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 121 | 1983754 | 1983993 | - | NZ_LR134494.1 | Serratia quinivorans |
| 122 | 4538483 | 4538728 | + | NZ_CP007230.1 | Yersinia similis |
| 123 | 4478763 | 4479002 | - | NZ_CP007230.1 | Yersinia similis |
| 124 | 1026362 | 1026607 | + | NZ_CP009787.1 | Yersinia rohdei |
| 125 | 1994687 | 1994926 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 126 | 51680 | 51919 | - | NZ_CP011078.1 | Yersinia ruckeri |
| 127 | 2046888 | 2047127 | - | NZ_LT906479.1 | Serratia ficaria |
| 128 | 3084438 | 3084677 | + | NZ_CP071320.1 | Serratia ureilytica |
| 129 | 1278652 | 1278891 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 130 | 236779 | 237018 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 131 | 2890555 | 2890803 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 132 | 3159291 | 3159539 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 133 | 1481177 | 1481425 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 134 | 54724 | 54972 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 135 | 2238727 | 2238975 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 136 | 2651605 | 2651853 | + | NZ_CP050150.1 | Hafnia alvei |
| 137 | 3108754 | 3108990 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 138 | 2163056 | 2163292 | + | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 139 | 2609722 | 2609964 | + | NZ_LR134531.1 | Pragia fontium |
| 140 | 1325635 | 1325877 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 141 | 1330098 | 1330340 | - | NZ_LS483470.1 | Leminorella richardii |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01292.22 | 0.6 | 78 | 2187 | same-strand | Prokaryotic cytochrome b561 |
| 2 | PF01266.26 | 0.78 | 101 | 698.0 | same-strand | FAD dependent oxidoreductase |
| 3 | PF01979.22 | 0.93 | 121 | 77.0 | same-strand | Amidohydrolase family |
| 4 | PF13991.8 | 0.97 | 126 | 323 | same-strand | BssS protein family |
++ More..